Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN06G4162 Fragaria x ananassa HOM05D003935 ORTHO05D005096 2.8e-177 625.2 312 100.0
FvH4_7g09530 Fragaria vesca HOM05D003935 ORTHO05D005096 1.4e-176 622.9 312 99.7
FAN10G2569 Fragaria x ananassa HOM05D003935 ORTHO05D005096 4.0e-176 621.3 312 99.4
FAN10G4028 Fragaria x ananassa HOM05D003935 ORTHO05D005096 4.0e-176 621.3 312 99.4
FAN01G1603 Fragaria x ananassa HOM05D003935 ORTHO05D005096 6.8e-176 620.5 312 98.7
FAN06G5089 Fragaria x ananassa HOM05D003935 ORTHO05D005096 2.0e-175 619.0 312 99.4
FAN03G1633 Fragaria x ananassa HOM05D003935 ORTHO05D005096 2.6e-175 618.6 312 99.0
RcHm_v2.0_Chr1g0346321 Rosa chinensis HOM05D003935 ORTHO05D005096 4.6e-164 581.3 314 94.6
Prupe.2G123000 Prunus persica HOM05D003935 ORTHO05D005096 1.3e-163 579.7 312 92.3
MD02G1218100 Malus domestica HOM05D003935 ORTHO05D005096 1.6e-161 572.8 312 92.3
CANSAT21G2109 Cannabis sativa HOM05D003935 ORTHO05D005096 3.6e-153 545.0 317 86.8
TPR.G3680 Trifolium pratense HOM05D003935 ORTHO05D005096 4.8e-153 544.7 313 86.3
Lalb_Chr01g0000281 Lupinus albus HOM05D003935 ORTHO05D005096 2.4e-152 542.3 313 86.6
Psat7g207040 Pisum sativum HOM05D003935 ORTHO05D005096 2.4e-152 542.3 313 85.9
VMungo1127G0071 Vigna mungo HOM05D003935 ORTHO05D005096 2.4e-152 542.3 313 86.6
TWI14G1423 Tripterygium wilfordii HOM05D003935 ORTHO05D005096 5.3e-152 541.2 317 86.1
COL.COLO4_12445 Corchorus olitorius HOM05D003935 ORTHO05D005096 6.9e-152 540.8 317 86.8
CSS0046772 Camellia sinensis var. sinensis HOM05D003935 ORTHO05D005096 9.0e-152 540.4 317 86.1
Thecc.01G388100 Theobroma cacao HOM05D003935 ORTHO05D005096 1.2e-151 540.0 317 87.1
Duzib133G0969 Durio zibethinus HOM05D003935 ORTHO05D005096 2.6e-151 538.9 318 86.8
Manes.06G132800 Manihot esculenta HOM05D003935 ORTHO05D005096 2.6e-151 538.9 317 85.8
Medtr4g036265 Medicago truncatula HOM05D003935 ORTHO05D005096 5.8e-151 537.7 313 85.6
Eucgr.K00175 Eucalyptus grandis HOM05D003935 ORTHO05D005096 9.9e-151 537.0 315 85.7
Glyma.12G005700 Glycine max HOM05D003935 ORTHO05D005096 9.9e-151 537.0 316 84.5
Thhalv10004633m.g Eutrema salsugineum HOM05D003935 ORTHO05D005096 1.3e-150 536.6 318 84.6
QL04p034713 Quercus lobata HOM05D003935 ORTHO05D005096 1.3e-150 536.6 316 85.8
Glyma.09G231000 Glycine max HOM05D003935 ORTHO05D005096 1.7e-150 536.2 315 85.1
Dinv16851 Davidia involucrata HOM05D003935 ORTHO05D005096 2.2e-150 535.8 317 85.8
AL8G38190 Arabidopsis lyrata HOM05D003935 ORTHO05D005096 2.9e-150 535.4 317 83.6
arahy.Tifrunner.gnm1.ann1.YZL4IN Arachis hypogaea HOM05D003935 ORTHO05D005096 2.9e-150 535.4 311 85.2
TAR374G1483 Trochodendron aralioides HOM05D003935 ORTHO05D005096 2.9e-150 535.4 317 85.2
GSVIVG01018224001 Vitis vinifera HOM05D003935 ORTHO05D005096 2.9e-150 535.4 317 85.5
Carub.0008s2219 Capsella rubella HOM05D003935 ORTHO05D005096 3.8e-150 535.0 317 83.9
Lalb_Chr19g0126281 Lupinus albus HOM05D003935 ORTHO05D005096 4.9e-150 534.6 317 84.5
Potri.001G126500 Populus trichocarpa HOM05D003935 ORTHO05D005096 4.9e-150 534.6 318 86.2
Migut.F00500 Erythranthe guttata HOM05D003935 ORTHO05D005096 6.4e-150 534.3 317 84.5
Hma1.2p1_0432F.1_g151940 Hydrangea macrophylla HOM05D003935 ORTHO05D005096 6.4e-150 534.3 315 86.0
CARHR275270 Cardamine hirsuta HOM05D003935 ORTHO05D005096 8.4e-150 533.9 317 83.6
Hma1.2p1_1132F.1_g260170 Hydrangea macrophylla HOM05D003935 ORTHO05D005096 1.9e-149 532.7 315 84.4
Duzib138G0818 Durio zibethinus HOM05D003935 ORTHO05D005096 2.4e-149 532.3 318 86.2
PGR142G1672 Punica granatum HOM05D003935 ORTHO05D005096 2.4e-149 532.3 316 84.2
AT5G61500 Arabidopsis thaliana HOM05D003935 ORTHO05D005096 3.2e-149 531.9 317 83.3
Nn6g33882 Nelumbo nucifera HOM05D003935 ORTHO05D005096 3.2e-149 531.9 317 84.5
Phvul.011G006500 Phaseolus vulgaris HOM05D003935 ORTHO05D005096 4.2e-149 531.6 313 85.0
MSTRG.27208 Avicennia marina HOM05D003935 ORTHO05D005096 5.4e-149 531.2 317 84.9
Gorai.004G165200 Gossypium raimondii HOM05D003935 ORTHO05D005096 1.2e-148 530.0 318 85.8
Gohir.D08G159150 Gossypium hirsutum HOM05D003935 ORTHO05D005096 1.6e-148 529.6 318 85.8
Oeu031400.2 Olea europaea HOM05D003935 ORTHO05D005096 1.6e-148 529.6 318 82.7
Sp2g24700 Schrenkiella parvula HOM05D003935 ORTHO05D005096 2.1e-148 529.3 317 83.0
Solyc06g034160.3 Solanum lycopersicum HOM05D003935 ORTHO05D005096 3.5e-148 528.5 317 85.2
vmacro09915 Vaccinium macrocarpon HOM05D003935 ORTHO05D005096 4.6e-148 528.1 317 84.2
CSS0045715 Camellia sinensis var. sinensis HOM05D003935 ORTHO05D005096 7.9e-148 527.3 317 85.2
Thhalv10014155m.g Eutrema salsugineum HOM05D003935 ORTHO05D005096 7.9e-148 527.3 317 83.0
Aqoxy7G00829 Aquilegia oxysepala HOM05D003935 ORTHO05D005096 1.0e-147 526.9 315 83.2
Gohir.A08G137866 Gossypium hirsutum HOM05D003935 ORTHO05D005096 1.0e-147 526.9 318 85.2
Sopen06g010820 Solanum pennellii HOM05D003935 ORTHO05D005096 1.0e-147 526.9 317 84.9
Potri.003G107000 Populus trichocarpa HOM05D003935 ORTHO05D005096 1.3e-147 526.6 319 85.6
SGA_v2.0_scaffold44G16558 Striga asiatica HOM05D003935 ORTHO05D005096 1.7e-147 526.2 315 82.9
arahy.Tifrunner.gnm1.ann1.2B4GQV Arachis hypogaea HOM05D003935 ORTHO05D005096 2.3e-147 525.8 311 83.9
Gohir.D07G154200 Gossypium hirsutum HOM05D003935 ORTHO05D005096 2.3e-147 525.8 318 84.6
Gorai.001G176400 Gossypium raimondii HOM05D003935 ORTHO05D005096 2.3e-147 525.8 318 84.6
Nitab4.5_0000448g0060 Nicotiana tabacum HOM05D003935 ORTHO05D005096 2.3e-147 525.8 317 84.9
BcaC06g33155 Brassica carinata HOM05D003935 ORTHO05D005096 3.9e-147 525.0 317 82.6
CiPaw.14G023500 Carya illinoinensis HOM05D003935 ORTHO05D005096 5.1e-147 524.6 317 83.3
THA.LOC104819415 Tarenaya hassleriana HOM05D003935 ORTHO05D005096 5.1e-147 524.6 317 83.0
CAN.G330.5 Capsicum annuum HOM05D003935 ORTHO05D005096 8.7e-147 523.9 317 83.6
Actinidia01047 Actinidia chinensis HOM05D003935 ORTHO05D005096 1.1e-146 523.5 317 83.3
CsaV3_6G008640 Cucumis sativus L. HOM05D003935 ORTHO05D005096 1.1e-146 523.5 316 83.5
arahy.Tifrunner.gnm1.ann1.16SP4W Arachis hypogaea HOM05D003935 ORTHO05D005096 2.5e-146 522.3 311 83.6
AUR62002246 Chenopodium quinoa HOM05D003935 ORTHO05D005096 2.5e-146 522.3 315 82.9
Sp6g35250 Schrenkiella parvula HOM05D003935 ORTHO05D005096 2.5e-146 522.3 317 82.0
Aa31LG11G1910 Aethionema arabicum HOM05D003935 ORTHO05D005096 3.3e-146 521.9 313 82.4
Gohir.A07G148000 Gossypium hirsutum HOM05D003935 ORTHO05D005096 3.3e-146 521.9 318 83.6
Cfa012922 Carpinus fangiana HOM05D003935 ORTHO05D005096 7.4e-146 520.8 317 82.3
MSTRG.8834 Avicennia marina HOM05D003935 ORTHO05D005096 9.6e-146 520.4 315 81.6
ClCG06G002480 Citrullus lanatus HOM05D003935 ORTHO05D005096 9.6e-146 520.4 316 82.9
Sed0016106 Sechium edule HOM05D003935 ORTHO05D005096 9.6e-146 520.4 316 83.2
PGSC0003DMG400021594 Solanum tuberosum HOM05D003935 ORTHO05D005096 9.6e-146 520.4 317 83.9
MELO3C022280.2 Cucumis melo HOM05D003935 ORTHO05D005096 1.3e-145 520.0 316 82.6
BolC7t45044H Brassica oleracea HOM05D003935 ORTHO05D005096 2.1e-145 519.2 314 81.8
Rhsim09G0190400 Rhododendron simsii HOM05D003935 ORTHO05D005096 2.1e-145 519.2 332 80.4
SalBow1G3743 Salvia bowleyana HOM05D003935 ORTHO05D005096 2.8e-145 518.8 317 82.0
THA.LOC104801570 Tarenaya hassleriana HOM05D003935 ORTHO05D005096 3.6e-145 518.5 317 81.7
Atru.chr1.845 Acer truncatum HOM05D003935 ORTHO05D005096 6.2e-145 517.7 315 82.2
Cpa.g.sc16.168 Carica papaya HOM05D003935 ORTHO05D005096 6.2e-145 517.7 317 82.0
Peaxi162Scf00304g01342 Petunia axillaris HOM05D003935 ORTHO05D005096 6.2e-145 517.7 317 82.3
Sabra01G0097600 Salix brachista HOM05D003935 ORTHO05D005096 8.1e-145 517.3 318 83.0
C07p45210 Brassica napus HOM05D003935 ORTHO05D005096 1.4e-144 516.5 314 81.5
Lj1C977G12 Lonicera japonica HOM05D003935 ORTHO05D005096 1.8e-144 516.2 340 78.5
Lj3g0013928 Lotus japonicus HOM05D003935 ORTHO05D005096 3.4e-143 511.9 317 81.1
PSO063G2499 Papaver somniferum HOM05D003935 ORTHO05D005096 3.4e-143 511.9 317 82.3
Nitab4.5_0000262g0090 Nicotiana tabacum HOM05D003935 ORTHO05D005096 5.8e-143 511.1 317 83.3
arahy.Tifrunner.gnm1.ann1.9TCX0P Arachis hypogaea HOM05D003935 ORTHO05D005096 9.9e-143 510.4 306 83.3
HanXRQChr15g0485951 Helianthus annuus HOM05D003935 ORTHO05D005096 9.9e-143 510.4 317 79.8
DCAR_020181 Daucus carota HOM05D003935 ORTHO05D005096 2.9e-142 508.8 317 79.8
PSO782G0781 Papaver somniferum HOM05D003935 ORTHO05D005096 2.9e-142 508.8 317 82.0
BcaB05g21604 Brassica carinata HOM05D003935 ORTHO05D005096 3.8e-142 508.4 318 80.2
Cc02_g04470 Coffea canephora HOM05D003935 ORTHO05D005096 3.8e-142 508.4 321 79.4
BolC2t06285H Brassica oleracea HOM05D003935 ORTHO05D005096 5.5e-141 504.6 317 80.8
Lsat_1_v5_gn_5_9340 Lactuca sativa HOM05D003935 ORTHO05D005096 1.2e-140 503.4 317 78.9
QL02p025668 Quercus lobata HOM05D003935 ORTHO05D005096 1.2e-140 503.4 316 80.4
Sabra03G0073800 Salix brachista HOM05D003935 ORTHO05D005096 1.3e-139 500.0 385 71.2
Haze_21276 Corylus avellana HOM05D003935 ORTHO05D005096 1.8e-139 499.6 324 78.4
Actinidia13591 Actinidia chinensis HOM05D003935 ORTHO05D005096 3.0e-139 498.8 311 82.0
unitig_37.g12492 Utricularia gibba HOM05D003935 ORTHO05D005096 4.3e-138 495.0 317 80.8
Rhsim03G0165100 Rhododendron simsii HOM05D003935 ORTHO05D005096 3.7e-137 491.9 339 75.5
HanXRQChr16g0512861 Helianthus annuus HOM05D003935 ORTHO05D005096 4.8e-137 491.5 317 77.3
BcaC03g13194 Brassica carinata HOM05D003935 ORTHO05D005096 6.2e-137 491.1 316 78.8
CDE04G2838 Ceratophyllum demersum HOM05D003935 ORTHO05D005096 1.8e-136 489.6 308 80.8
Ciclev10005442m.g Citrus clementina HOM05D003935 ORTHO05D005096 5.3e-136 488.0 322 77.3
BraA02t04926Z Brassica rapa HOM05D003935 ORTHO05D005096 1.5e-135 486.5 316 79.1
C02p03220 Brassica napus HOM05D004498 ORTHO05D005300 7.6e-135 484.2 312 78.2
Hund04562 Selenicereus undatus HOM05D003935 ORTHO05D005096 8.4e-134 480.7 312 78.5
Aa31LG3G18800 Aethionema arabicum HOM05D003935 ORTHO05D005096 2.5e-133 479.2 314 77.7
BraA03t13837Z Brassica rapa HOM05D003935 ORTHO05D005096 2.1e-132 476.1 313 77.3
A03p47100 Brassica napus HOM05D003935 ORTHO05D005096 6.0e-132 474.6 313 77.0
Ca_12623_v3 Cicer arietinum L. HOM05D003935 ORTHO05D005096 1.0e-131 473.8 313 77.6
EL10Ac3g05885 Beta vulgaris HOM05D003935 ORTHO05D005096 8.7e-131 470.7 287 82.2
Mapoly0003s0208 Marchantia polymorpha HOM05D003935 ORTHO05D005096 1.5e-130 469.9 322 73.3
Ah.07g207480 Amaranthus hybridus HOM05D003935 ORTHO05D005096 3.7e-129 465.3 290 81.4
Haze_02753 Corylus avellana HOM05D003935 ORTHO05D005096 4.1e-128 461.8 465 57.4
ECA232G4201 Erigeron canadensis HOM05D003935 ORTHO05D005096 2.6e-127 459.1 296 77.0
Pp3c8_11900 Physcomitrium patens HOM05D003935 ORTHO05D005096 7.6e-127 457.6 310 73.2
Sc10g0008570 Simmondsia chinensis HOM05D003935 ORTHO05D005096 5.5e-125 451.4 285 80.0
CiPaw.07G237000 Carya illinoinensis HOM05D003935 ORTHO05D005096 1.1e-122 443.7 328 70.4
Nitab4.5_0001267g0110 Nicotiana tabacum HOM05D003935 ORTHO05D005096 4.3e-122 441.8 284 78.2
Lsat_1_v5_gn_9_51820 Lactuca sativa HOM05D003935 ORTHO05D005096 2.0e-119 433.0 315 72.4
Os01g0200000 Oryza sativa ssp. japonica HOM05D003935 ORTHO05D005096 2.9e-118 429.1 318 68.2
SMO134G0003 Selaginella moellendorffii HOM05D003935 ORTHO05D005096 8.5e-118 427.6 322 67.1
BcaC06g33158 Brassica carinata HOM05D003935 ORTHO05D005096 7.9e-116 421.0 260 81.2
ATR0057G070 Amborella trichopoda HOM05D003935 ORTHO05D005096 3.1e-112 409.1 283 70.3
Zm00001eb391210 Zea mays HOM05D003935 ORTHO05D005096 1.2e-111 407.1 315 66.7
Actinidia24986 Actinidia chinensis HOM05D003935 ORTHO05D005096 1.6e-108 396.7 242 82.6
MD07G1099100 Malus domestica HOM05D003935 ORTHO05D005096 5.4e-88 328.6 189 86.2
AUR62015457 Chenopodium quinoa HOM05D003935 ORTHO05D005096 2.7e-87 326.2 215 76.3
CBR_g28076 Chara braunii HOM05D003935 ORTHO05D000002 3.6e-76 289.3 256 59.4
arahy.Tifrunner.gnm1.ann1.VY970J Arachis hypogaea HOM05D003935 ORTHO05D005096 2.2e-73 280.0 158 84.8
Cre02.g102350 Chlamydomonas reinhardtii HOM05D003935 ORTHO05D005096 3.7e-73 279.3 310 50.6
Dinv06578 Davidia involucrata HOM05D003935 ORTHO05D005096 2.3e-70 270.0 178 77.0
MCO14G260 Micromonas commoda HOM05D003935 ORTHO05D005096 1.9e-69 266.9 313 46.6
Nitab4.5_0001358g0020 Nicotiana tabacum HOM05D003935 ORTHO05D005096 3.6e-68 262.7 174 74.7
AagrBONN_evm.TU.Sc2ySwM_369.216 Anthoceros agrestis HOM05D003935 ORTHO05D005096 7.5e-66 255.0 271 52.0
arahy.Tifrunner.gnm1.ann1.XHAQ77 Arachis hypogaea HOM05D003935 ORTHO05D005096 7.3e-61 238.4 179 69.3
Haze_27326 Corylus avellana HOM05D003935 ORTHO05D005096 4.9e-57 225.7 305 42.3
Nn051s41922 Nelumbo nucifera HOM05D003935 ORTHO05D005096 3.2e-56 223.0 151 72.8
Nn1g09078 Nelumbo nucifera HOM05D003935 ORTHO05D005096 3.2e-56 223.0 151 72.8
PRCOL_00004022 Prasinoderma coloniale HOM05D003935 ORTHO05D005096 3.2e-56 223.0 297 43.4
Nitab4.5_0001358g0040 Nicotiana tabacum HOM05D003935 ORTHO05D001473 1.2e-55 221.1 106 98.1
SEGI_20183 Sequoiadendron giganteum HOM05D003935 ORTHO05D005096 1.0e-54 218.0 170 62.9
CsaV3_4G004080 Cucumis sativus L. HOM05D003935 ORTHO05D044846 1.1e-53 214.5 279 47.0
Os10g0560450 Oryza sativa ssp. japonica HOM05D003935 ORTHO05D005096 1.4e-48 197.6 184 57.6
Zm00001eb003720 Zea mays HOM05D003935 ORTHO05D005096 4.7e-44 182.6 113 73.5
Zm00001eb078430 Zea mays HOM05D003935 ORTHO05D005096 4.7e-44 182.6 113 73.5
Zm00001eb363440 Zea mays HOM05D003935 ORTHO05D005096 4.0e-43 179.5 113 72.6
SEGI_13739 Sequoiadendron giganteum HOM05D003935 ORTHO05D005096 5.2e-43 179.1 103 82.5
BcaB05g21605 Brassica carinata HOM05D003935 ORTHO05D005096 4.4e-42 176.0 143 62.9
MELO3C032833.2 Cucumis melo HOM05D003935 ORTHO05D044846 1.3e-41 174.5 307 40.7
Zm00001eb216570 Zea mays HOM05D003935 ORTHO05D005096 4.9e-41 172.6 127 66.1
Rhsim01G0073400 Rhododendron simsii HOM05D003935 ORTHO05D005096 9.3e-40 168.3 147 63.9
Rhsim06G0236800 Rhododendron simsii HOM05D003935 ORTHO05D005096 5.1e-38 162.5 140 64.3
Lj2A404G32 Lonicera japonica HOM05D000092 ORTHO05D000042 9.0e-35 151.8 274 34.7
AL7G47000 Arabidopsis lyrata HOM05D003935 ORTHO05D003430 7.6e-34 148.7 119 63.9
Rhsim11G0131000 Rhododendron simsii HOM05D003935 ORTHO05D005096 3.8e-33 146.4 181 50.8
BcaB01g00746 Brassica carinata HOM05D003935 ORTHO05D005096 7.1e-32 142.1 108 66.7
MD07G1099000 Malus domestica HOM05D003935 ORTHO05D005096 1.3e-25 121.3 60 95.0
A09p20840 Brassica napus HOM05D000772 ORTHO05D003239 2.9e-25 120.2 80 73.8
BraA09t37687Z Brassica rapa HOM05D000772 ORTHO05D003239 2.9e-25 120.2 80 73.8
Rhsim06G0096100 Rhododendron simsii HOM05D003935 ORTHO05D005096 2.4e-24 117.1 118 60.2
SEGI_32586 Sequoiadendron giganteum HOM05D003935 ORTHO05D005096 3.2e-24 116.7 63 84.1
BcaC04g19029 Brassica carinata HOM05D003935 ORTHO05D005096 5.6e-21 105.9 116 56.0
CBR_g28077 Chara braunii HOM05D003935 ORTHO05D005096 2.8e-20 103.6 72 65.3
Lj9A23G20 Lonicera japonica HOM05D000092 ORTHO05D000042 1.8e-19 100.9 117 45.3
arahy.Tifrunner.gnm1.ann1.W2J7UU Arachis hypogaea HOM05D003935 ORTHO05D023770 2.0e-18 97.4 53 86.8
C03p26610 Brassica napus HOM05D003935 ORTHO05D023770 6.5e-17 92.4 53 81.1
Zm00001eb269920 Zea mays HOM05D001580 ORTHO05D001517 5.5e-16 89.4 52 82.7
SalBow2G0135 Salvia bowleyana HOM05D003935 ORTHO05D357983 9.3e-16 88.6 47 87.2
Actinidia10778 Actinidia chinensis HOM05D003935 ORTHO05D005096 3.3e-13 80.1 96 55.2
Rhsim12G0075300 Rhododendron simsii HOM05D016728 ORTHO05D338590 1.3e-09 68.2 104 46.2
BcaC03g17887 Brassica carinata HOM05D003935 ORTHO05D005096 2.5e-08 63.9 46 65.2
Zm00001eb395010 Zea mays HOM05D034860 ORTHO05D442630 1.0e-06 58.5 37 62.2
Glyma.12G161000 Glycine max HOM05D000557 ORTHO05D212538 2.3e-06 57.4 46 58.7
Zm00001eb363380 Zea mays HOM05D003935 ORTHO05D445556 8.7e-06 55.5 37 59.5


User provided reference genes

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