Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN06G4021 Fragaria x ananassa HOM05D001513 ORTHO05D046330 4.2e-43 177.6 86 100.0
FvH4_7g20370 Fragaria vesca HOM05D001513 ORTHO05D046330 5.7e-32 140.6 68 100.0
FAN01G3029 Fragaria x ananassa HOM05D001513 ORTHO05D001494 3.1e-30 134.8 67 94.0
FAN10G2938 Fragaria x ananassa HOM05D001513 ORTHO05D001494 2.6e-29 131.7 67 91.0
FAN06G3941 Fragaria x ananassa HOM05D001513 ORTHO05D001494 2.0e-13 79.0 47 85.1
FvH4_1g07690 Fragaria vesca HOM05D001513 ORTHO05D001494 8.9e-09 63.5 40 77.5
FAN19G1837 Fragaria x ananassa HOM05D001513 ORTHO05D001494 8.9e-09 63.5 40 77.5
RcHm_v2.0_Chr2g0093551 Rosa chinensis HOM05D001513 ORTHO05D001494 8.9e-09 63.5 40 77.5
FvH4_1g07671 Fragaria vesca HOM05D001513 ORTHO05D001494 1.5e-08 62.8 40 72.5
FAN19G2451 Fragaria x ananassa HOM05D001513 ORTHO05D001494 3.4e-08 61.6 40 70.0
FAN23G0401 Fragaria x ananassa HOM05D001513 ORTHO05D001494 5.7e-08 60.8 40 72.5
RcHm_v2.0_Chr2g0093531 Rosa chinensis HOM05D001513 ORTHO05D001494 7.5e-08 60.5 40 75.0
DCAR_011968 Daucus carota HOM05D000113 ORTHO05D003010 1.7e-07 59.3 40 70.0
TWI34G0577 Tripterygium wilfordii HOM05D001513 ORTHO05D001494 1.7e-07 59.3 30 83.3
RcHm_v2.0_Chr2g0093511 Rosa chinensis HOM05D001513 ORTHO05D001494 2.8e-07 58.5 40 67.5
CARHR156250 Cardamine hirsuta HOM05D001513 ORTHO05D001494 3.7e-07 58.2 33 78.8
Thhalv10010563m.g Eutrema salsugineum HOM05D001513 ORTHO05D001494 3.7e-07 58.2 33 78.8
Sp5g14325 Schrenkiella parvula HOM05D001513 ORTHO05D001494 3.7e-07 58.2 33 78.8
Duzib168G1998 Durio zibethinus HOM05D001513 ORTHO05D001494 4.9e-07 57.8 40 67.5
Lj4A302G10 Lonicera japonica HOM05D001513 ORTHO05D001494 4.9e-07 57.8 40 67.5
Rhsim05G0018700 Rhododendron simsii HOM05D001513 ORTHO05D001494 4.9e-07 57.8 40 70.0
BcaB01g00904 Brassica carinata HOM05D001513 ORTHO05D001494 6.3e-07 57.4 33 78.8
FvH4_1g07650 Fragaria vesca HOM05D001513 ORTHO05D001494 6.3e-07 57.4 40 65.0
FAN23G3133 Fragaria x ananassa HOM05D001513 ORTHO05D001494 6.3e-07 57.4 40 65.0
FAN26G1523 Fragaria x ananassa HOM05D001513 ORTHO05D001494 6.3e-07 57.4 40 65.0
Dinv42326 Davidia involucrata HOM05D001513 ORTHO05D001494 8.3e-07 57.0 33 78.8
AL3G48700 Arabidopsis lyrata HOM05D001513 ORTHO05D001494 1.1e-06 56.6 33 75.8
AT3G47590 Arabidopsis thaliana HOM05D001513 ORTHO05D001494 1.1e-06 56.6 33 75.8
CSS0024859 Camellia sinensis var. sinensis HOM05D001513 ORTHO05D001494 1.1e-06 56.6 52 50.0
Thhalv10010963m.g Eutrema salsugineum HOM05D001513 ORTHO05D001494 1.4e-06 56.2 33 72.7
Aqoxy5G02189 Aquilegia oxysepala HOM05D001513 ORTHO05D001494 1.8e-06 55.8 40 65.0
BcaC01g01803 Brassica carinata HOM05D001513 ORTHO05D001494 1.8e-06 55.8 33 72.7
C03p71780 Brassica napus HOM05D001513 ORTHO05D001494 1.8e-06 55.8 33 72.7
BolC3t19467H Brassica oleracea HOM05D001513 ORTHO05D001494 1.8e-06 55.8 33 72.7
Carub.0005s1365 Capsella rubella HOM05D001513 ORTHO05D001494 1.8e-06 55.8 40 62.5
Prupe.7G208200 Prunus persica HOM05D001513 ORTHO05D001494 1.8e-06 55.8 40 65.0
SalBow6G1115 Salvia bowleyana HOM05D001513 ORTHO05D001494 1.8e-06 55.8 33 72.7
Sp5g14320 Schrenkiella parvula HOM05D001513 ORTHO05D001494 1.8e-06 55.8 33 75.8
Thecc.09G087500 Theobroma cacao HOM05D001513 ORTHO05D001494 1.8e-06 55.8 40 65.0
vmacro17247 Vaccinium macrocarpon HOM05D001513 ORTHO05D001494 1.8e-06 55.8 40 65.0
GSVIVG01015190001 Vitis vinifera HOM05D001513 ORTHO05D001494 1.8e-06 55.8 33 69.7
FAN26G0480 Fragaria x ananassa HOM05D001513 ORTHO05D001494 2.4e-06 55.5 40 62.5
TAR626G0461 Trochodendron aralioides HOM05D001513 ORTHO05D001494 2.4e-06 55.5 33 75.8
BcaC01g01802 Brassica carinata HOM05D001513 ORTHO05D001494 3.1e-06 55.1 33 75.8
BcaC01g02285 Brassica carinata HOM05D001513 ORTHO05D001494 3.1e-06 55.1 33 75.8
C03p67040 Brassica napus HOM05D001513 ORTHO05D001494 3.1e-06 55.1 33 75.8
C03p71790 Brassica napus HOM05D001513 ORTHO05D001494 3.1e-06 55.1 33 75.8
BolC3t18978H Brassica oleracea HOM05D001513 ORTHO05D001494 3.1e-06 55.1 33 75.8
CSS0031799 Camellia sinensis var. sinensis HOM05D001513 ORTHO05D001494 3.1e-06 55.1 33 69.7
Eucgr.C00876 Eucalyptus grandis HOM05D001513 ORTHO05D001494 3.1e-06 55.1 52 53.8
Eucgr.C00879 Eucalyptus grandis HOM05D001513 ORTHO05D001494 3.1e-06 55.1 40 65.0
MBI04_g34118_MAGBIO Magnolia biondii HOM05D001513 ORTHO05D001494 3.1e-06 55.1 30 76.7
Nn8g38845 Nelumbo nucifera HOM05D001513 ORTHO05D001494 3.1e-06 55.1 33 66.7
Thecc.09G087700 Theobroma cacao HOM05D001513 ORTHO05D001494 3.1e-06 55.1 33 69.7
MSTRG.10554 Avicennia marina HOM05D001513 ORTHO05D001494 4.1e-06 54.7 33 72.7
CANSAT56G3477 Cannabis sativa HOM05D001513 ORTHO05D001494 4.1e-06 54.7 40 65.0
CAN.G339.38 Capsicum annuum HOM05D001513 ORTHO05D001494 4.1e-06 54.7 33 69.7
CAN.G424.23 Capsicum annuum HOM05D001513 ORTHO05D001494 4.1e-06 54.7 33 69.7
Cfa003072 Carpinus fangiana HOM05D001513 ORTHO05D001494 4.1e-06 54.7 40 62.5
Gohir.A05G030200 Gossypium hirsutum HOM05D001513 ORTHO05D001494 4.1e-06 54.7 40 65.0
Gohir.D05G031600 Gossypium hirsutum HOM05D001513 ORTHO05D001494 4.1e-06 54.7 40 65.0
Gorai.009G031800 Gossypium raimondii HOM05D001513 ORTHO05D001494 4.1e-06 54.7 40 65.0
MD02G1081000 Malus domestica HOM05D001513 ORTHO05D001494 4.1e-06 54.7 33 72.7
Sopen07g019090 Solanum pennellii HOM05D001513 ORTHO05D001494 4.1e-06 54.7 33 69.7
PGSC0003DMG400022044 Solanum tuberosum HOM05D001513 ORTHO05D001494 4.1e-06 54.7 33 69.7
THA.LOC104814624 Tarenaya hassleriana HOM05D001513 ORTHO05D001494 4.1e-06 54.7 33 72.7
AT2G19550 Arabidopsis thaliana HOM05D001513 ORTHO05D001494 5.4e-06 54.3 40 65.0
AUR62033950 Chenopodium quinoa HOM05D001513 ORTHO05D001494 5.4e-06 54.3 33 69.7
Eucgr.L02651 Eucalyptus grandis HOM05D001513 ORTHO05D001494 5.4e-06 54.3 52 50.0
MD02G1094000 Malus domestica HOM05D001513 ORTHO05D001494 5.4e-06 54.3 40 60.0
Nitab4.5_0010540g0030 Nicotiana tabacum HOM05D001513 ORTHO05D001494 5.4e-06 54.3 33 66.7
Peaxi162Scf00604g00421 Petunia axillaris HOM05D001513 ORTHO05D001494 5.4e-06 54.3 33 72.7
PGR142G4218 Punica granatum HOM05D001513 ORTHO05D001494 5.4e-06 54.3 40 60.0
Sed0006940 Sechium edule HOM05D001513 ORTHO05D001494 5.4e-06 54.3 33 75.8
ATR0733G166 Amborella trichopoda HOM05D001513 ORTHO05D001494 7.0e-06 53.9 33 60.6
AL1G43670 Arabidopsis lyrata HOM05D001513 ORTHO05D001494 7.0e-06 53.9 33 72.7
AT1G29840 Arabidopsis thaliana HOM05D001513 ORTHO05D001494 7.0e-06 53.9 33 72.7
A06p20040 Brassica napus HOM05D001513 ORTHO05D001494 7.0e-06 53.9 33 69.7
Cc06_g11500 Coffea canephora HOM05D001513 ORTHO05D001494 7.0e-06 53.9 33 66.7
Lsat_1_v5_gn_5_142881 Lactuca sativa HOM05D001513 ORTHO05D001494 7.0e-06 53.9 33 69.7
Lj4g0002328 Lotus japonicus HOM05D001513 ORTHO05D001494 7.0e-06 53.9 33 66.7
MD15G1208700 Malus domestica HOM05D001513 ORTHO05D001494 7.0e-06 53.9 40 57.5
Manes.16G101100 Manihot esculenta HOM05D001513 ORTHO05D001494 7.0e-06 53.9 33 66.7
vmacro17250 Vaccinium macrocarpon HOM05D001513 ORTHO05D001494 7.0e-06 53.9 40 60.0
COL.COLO4_18191 Corchorus olitorius HOM05D001513 ORTHO05D001494 9.2e-06 53.5 45 57.8
Eucgr.C00878 Eucalyptus grandis HOM05D001513 ORTHO05D001494 9.2e-06 53.5 52 50.0
Nitab4.5_0010634g0040 Nicotiana tabacum HOM05D001513 ORTHO05D001494 9.2e-06 53.5 33 66.7
Oeu039604.2 Olea europaea HOM05D001513 ORTHO05D001494 9.2e-06 53.5 33 66.7


User provided reference genes

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