Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN06G3928 Fragaria x ananassa HOM05D006363 ORTHO05D007920 2.1e-109 399.1 204 100.0
FvH4_7g29240 Fragaria vesca HOM05D006363 ORTHO05D007920 4.7e-109 397.9 204 99.5
FAN06G3284 Fragaria x ananassa HOM05D006363 ORTHO05D007920 4.7e-109 397.9 204 99.5
FAN10G0438 Fragaria x ananassa HOM05D006363 ORTHO05D007920 2.3e-108 395.6 204 98.5
FAN03G1027 Fragaria x ananassa HOM05D006363 ORTHO05D007920 2.9e-106 388.7 204 97.5
RcHm_v2.0_Chr1g0376991 Rosa chinensis HOM05D006363 ORTHO05D007920 1.8e-105 386.0 204 96.6
FAN03G1282 Fragaria x ananassa HOM05D006363 ORTHO05D007920 5.0e-103 377.9 204 96.1
Prupe.2G292400 Prunus persica HOM05D006363 ORTHO05D007920 6.2e-93 344.4 207 87.0
Sabra15G0151200 Salix brachista HOM05D006363 ORTHO05D007920 1.7e-90 336.3 202 83.7
MD07G1266800 Malus domestica HOM05D006363 ORTHO05D007920 4.9e-90 334.7 195 87.2
CiPaw.03G104700 Carya illinoinensis HOM05D006363 ORTHO05D007920 8.3e-90 334.0 195 85.6
Haze_13734 Corylus avellana HOM05D006363 ORTHO05D007920 2.4e-89 332.4 198 84.3
Cfa008303 Carpinus fangiana HOM05D006363 ORTHO05D007920 9.2e-89 330.5 198 83.3
MD01G1199000 Malus domestica HOM05D006363 ORTHO05D007920 7.8e-88 327.4 197 83.8
Gohir.D12G260100 Gossypium hirsutum HOM05D006363 ORTHO05D007920 1.7e-87 326.2 196 85.7
Gorai.008G278600 Gossypium raimondii HOM05D006363 ORTHO05D007920 3.0e-87 325.5 196 85.7
Gohir.A12G258900 Gossypium hirsutum HOM05D006363 ORTHO05D007920 6.6e-87 324.3 196 85.2
Potri.015G140600 Populus trichocarpa HOM05D006363 ORTHO05D007920 2.5e-86 322.4 199 80.9
Ciclev10007013m.g Citrus clementina HOM05D006363 ORTHO05D007920 7.3e-86 320.9 206 80.1
TWI39G0139 Tripterygium wilfordii HOM05D006363 ORTHO05D007920 1.6e-85 319.7 202 79.7
Duzib205G1779 Durio zibethinus HOM05D006363 ORTHO05D007920 2.1e-85 319.3 198 83.8
QL09p014582 Quercus lobata HOM05D006363 ORTHO05D007920 2.1e-85 319.3 201 80.1
Thecc.03G174500 Theobroma cacao HOM05D006363 ORTHO05D007920 2.1e-85 319.3 197 84.3
TPR.G14326 Trifolium pratense HOM05D006363 ORTHO05D007920 2.8e-85 318.9 204 78.9
COL.COLO4_14288 Corchorus olitorius HOM05D006363 ORTHO05D007920 6.2e-85 317.8 196 83.7
Medtr1g100753 Medicago truncatula HOM05D006363 ORTHO05D007920 6.2e-85 317.8 207 78.3
Manes.07G111200 Manihot esculenta HOM05D006363 ORTHO05D007920 1.1e-84 317.0 200 80.5
Atru.chr1.482 Acer truncatum HOM05D006363 ORTHO05D007920 6.8e-84 314.3 196 79.6
Psat6g200600 Pisum sativum HOM05D006363 ORTHO05D007920 1.5e-83 313.2 204 77.5
Ca_10782_v3 Cicer arietinum L. HOM05D006363 ORTHO05D007920 9.9e-83 310.5 198 79.3
Glyma.10G237500 Glycine max HOM05D006363 ORTHO05D007920 1.3e-82 310.1 207 77.3
PGR042G3170 Punica granatum HOM05D006363 ORTHO05D007920 1.7e-82 309.7 208 76.9
VMungo0720G1872 Vigna mungo HOM05D006363 ORTHO05D007920 4.9e-82 308.1 208 77.4
Glyma.20G157100 Glycine max HOM05D006363 ORTHO05D007920 6.4e-82 307.8 197 79.7
Cpa.g.sc107.33 Carica papaya HOM05D006363 ORTHO05D007920 1.4e-81 306.6 202 75.2
LjContig00238g0019616 Lotus japonicus HOM05D006363 ORTHO05D007920 1.9e-81 306.2 205 77.1
Phvul.007G068100 Phaseolus vulgaris HOM05D006363 ORTHO05D007920 3.2e-81 305.4 195 79.0
THA.LOC104811988 Tarenaya hassleriana HOM05D006363 ORTHO05D007920 1.3e-79 300.1 202 73.8
Thhalv10015742m.g Eutrema salsugineum HOM05D006363 ORTHO05D007920 2.3e-79 299.3 204 74.0
Aa31LG3G8570 Aethionema arabicum HOM05D006363 ORTHO05D007920 3.3e-78 295.4 195 75.4
CARHR265110 Cardamine hirsuta HOM05D006363 ORTHO05D007920 3.3e-78 295.4 207 72.5
CsaV3_3G016980 Cucumis sativus L. HOM05D006363 ORTHO05D007920 4.3e-78 295.0 206 75.7
MELO3C006895.2 Cucumis melo HOM05D006363 ORTHO05D007920 5.6e-78 294.7 206 76.2
FAN01G1422 Fragaria x ananassa HOM05D006363 ORTHO05D007920 9.6e-78 293.9 204 78.4
Rhsim09G0197500 Rhododendron simsii HOM05D006363 ORTHO05D007920 1.6e-77 293.1 195 77.9
Lalb_Chr02g0140961 Lupinus albus HOM05D006363 ORTHO05D007920 6.2e-77 291.2 200 71.5
BcaC01g06171 Brassica carinata HOM05D006363 ORTHO05D007920 2.4e-76 289.3 197 74.6
Sed0019375 Sechium edule HOM05D006363 ORTHO05D007920 2.4e-76 289.3 200 75.5
vmacro09843 Vaccinium macrocarpon HOM05D006363 ORTHO05D007920 4.0e-76 288.5 195 75.4
BcaB01g04190 Brassica carinata HOM05D006363 ORTHO05D007920 5.2e-76 288.1 197 74.6
BolC3t14244H Brassica oleracea HOM05D006363 ORTHO05D007920 6.8e-76 287.7 197 74.1
BraA03t10870Z Brassica rapa HOM05D006363 ORTHO05D007920 8.9e-76 287.3 197 74.1
Eucgr.A02801 Eucalyptus grandis HOM05D006363 ORTHO05D007920 8.9e-76 287.3 212 71.7
CANSAT21G2254 Cannabis sativa HOM05D006363 ORTHO05D007920 1.5e-75 286.6 197 77.7
C03p18470 Brassica napus HOM05D006363 ORTHO05D007920 2.6e-75 285.8 197 73.6
Carub.0008s1228 Capsella rubella HOM05D006363 ORTHO05D007920 2.6e-75 285.8 205 71.7
AL8G26570 Arabidopsis lyrata HOM05D006363 ORTHO05D007920 4.4e-75 285.0 201 73.1
AUR62016007 Chenopodium quinoa HOM05D006363 ORTHO05D007920 9.9e-75 283.9 194 75.3
CANSAT21G0627 Cannabis sativa HOM05D006363 ORTHO05D007920 1.7e-74 283.1 197 77.7
AUR62021214 Chenopodium quinoa HOM05D006363 ORTHO05D007920 2.2e-74 282.7 206 72.8
CSS0002932 Camellia sinensis var. sinensis HOM05D006363 ORTHO05D007920 1.4e-73 280.0 205 71.2
CSS0028509 Camellia sinensis var. sinensis HOM05D006363 ORTHO05D007920 1.9e-73 279.6 206 70.9
GSVIVG01010552001 Vitis vinifera HOM05D006363 ORTHO05D007920 1.9e-73 279.6 203 71.9
Peaxi162Scf00915g00018 Petunia axillaris HOM05D006363 ORTHO05D007920 4.2e-73 278.5 204 71.6
EL10Ac3g05667 Beta vulgaris HOM05D006363 ORTHO05D007920 5.4e-73 278.1 195 72.8
Sp6g14440 Schrenkiella parvula HOM05D006363 ORTHO05D007920 5.4e-73 278.1 199 71.4
Dinv28459 Davidia involucrata HOM05D006363 ORTHO05D007920 9.3e-73 277.3 209 67.9
AT5G52190 Arabidopsis thaliana HOM05D006363 ORTHO05D007920 1.2e-72 276.9 208 68.8
Migut.F01133 Erythranthe guttata HOM05D006363 ORTHO05D007920 1.0e-71 273.9 202 68.3
Lj8C25T12 Lonicera japonica HOM05D006363 ORTHO05D007920 2.3e-71 272.7 196 70.9
MSTRG.8448 Avicennia marina HOM05D006363 ORTHO05D007920 3.9e-71 271.9 205 69.8
Sopen03g004810 Solanum pennellii HOM05D006363 ORTHO05D007920 1.9e-70 269.6 205 68.8
Solyc03g025990.1 Solanum lycopersicum HOM05D006363 ORTHO05D007920 3.3e-70 268.9 205 68.8
Cc03_g13850 Coffea canephora HOM05D006363 ORTHO05D007920 9.6e-70 267.3 196 69.9
Lsat_1_v5_gn_2_133820 Lactuca sativa HOM05D006363 ORTHO05D007920 1.3e-69 266.9 202 66.8
PGSC0003DMG400014325 Solanum tuberosum HOM05D006363 ORTHO05D007920 1.3e-69 266.9 205 68.8
ECA238G0548 Erigeron canadensis HOM05D006363 ORTHO05D007920 3.6e-69 265.4 201 69.2
Nitab4.5_0001508g0030 Nicotiana tabacum HOM05D006363 ORTHO05D007920 3.6e-69 265.4 205 68.8
Nitab4.5_0000716g0210 Nicotiana tabacum HOM05D006363 ORTHO05D007920 4.8e-69 265.0 202 68.3
Oeu062762.2 Olea europaea HOM05D006363 ORTHO05D007920 4.8e-69 265.0 208 66.3
Nn6g34197 Nelumbo nucifera HOM05D006363 ORTHO05D007920 1.8e-68 263.1 202 67.3
Ah.13g075440 Amaranthus hybridus HOM05D006363 ORTHO05D007920 1.7e-66 256.5 185 72.4
HanXRQChr14g0462221 Helianthus annuus HOM05D006363 ORTHO05D007920 1.7e-66 256.5 204 66.2
unitig_60.g25545 Utricularia gibba HOM05D006363 ORTHO05D007920 1.7e-66 256.5 196 70.4
PSO782G5704 Papaver somniferum HOM05D006363 ORTHO05D007920 1.9e-65 253.1 226 59.7
Aqoxy7G00395 Aquilegia oxysepala HOM05D006363 ORTHO05D007920 7.9e-64 247.7 205 62.0
CAN.G947.11 Capsicum annuum HOM05D006363 ORTHO05D007920 7.9e-64 247.7 192 68.8
DCAR_018188 Daucus carota HOM05D006363 ORTHO05D007920 1.0e-63 247.3 202 62.4
MBI04_g04731_MAGBIO Magnolia biondii HOM05D006363 ORTHO05D007920 8.7e-63 244.2 204 62.7
PSO478G1739 Papaver somniferum HOM05D006363 ORTHO05D007920 8.7e-63 244.2 225 58.2
TAR375G0304 Trochodendron aralioides HOM05D006363 ORTHO05D007920 6.2e-61 238.0 184 66.3
Zm00001eb428810 Zea mays HOM05D006363 ORTHO05D007920 3.2e-57 225.7 202 60.9
Os04g0568600 Oryza sativa ssp. japonica HOM05D006363 ORTHO05D007920 1.8e-55 219.9 194 61.3
A03p15800 Brassica napus HOM05D006363 ORTHO05D007920 5.1e-55 218.4 143 79.0
CDE04G1845 Ceratophyllum demersum HOM05D006363 ORTHO05D007920 1.9e-54 216.5 180 63.3
ATR0757G111 Amborella trichopoda HOM05D006363 ORTHO05D007920 3.3e-54 215.7 203 59.6
HPP92_021110 Vanilla planifolia HOM05D006363 ORTHO05D007920 5.3e-52 208.4 183 60.7
Sc25g0000440 Simmondsia chinensis HOM05D006363 ORTHO05D007920 1.0e-42 177.6 142 66.2
SalBow2G2214 Salvia bowleyana HOM05D006363 ORTHO05D007920 3.8e-42 175.6 143 63.6
SEGI_31787 Sequoiadendron giganteum HOM05D006363 ORTHO05D007920 1.1e-41 174.1 201 50.2
A08p37210 Brassica napus HOM05D006363 ORTHO05D007920 2.7e-40 169.5 135 65.9
Pp3c6_24270 Physcomitrium patens HOM05D006363 ORTHO05D007920 1.3e-39 167.2 210 46.2
SMO367G0077 Selaginella moellendorffii HOM05D006363 ORTHO05D007920 2.2e-37 159.8 169 56.2
BcaC01g06168 Brassica carinata HOM05D006363 ORTHO05D007920 2.6e-27 126.3 92 67.4
BcaC06g36545 Brassica carinata HOM05D006363 ORTHO05D007920 2.7e-24 116.3 86 67.4
Mapoly0047s0087 Marchantia polymorpha HOM05D006363 ORTHO05D007920 1.8e-20 103.6 105 53.3
Actinidia03116 Actinidia chinensis HOM05D006363 ORTHO05D007920 5.0e-18 95.5 198 40.4
BolC5t32613H Brassica oleracea HOM05D006363 ORTHO05D007920 2.1e-16 90.1 66 66.7
Pp3c17_12800 Physcomitrium patens HOM05D006363 ORTHO05D007920 2.1e-16 90.1 144 38.2
TPR.G33086 Trifolium pratense HOM05D006363 ORTHO05D007920 2.1e-16 90.1 59 76.3
C05p38730 Brassica napus HOM05D006363 ORTHO05D007920 8.0e-16 88.2 66 65.2
TAR633G0106 Trochodendron aralioides HOM05D006363 ORTHO05D007920 4.0e-15 85.9 71 59.2
BcaC01g06167 Brassica carinata HOM05D006363 ORTHO05D007920 1.5e-14 84.0 45 88.9
TAR291G0005 Trochodendron aralioides HOM05D006363 ORTHO05D007920 1.3e-13 80.9 70 58.6
TAR375G0495 Trochodendron aralioides HOM05D006363 ORTHO05D007920 1.3e-13 80.9 70 58.6
TAR614G0003 Trochodendron aralioides HOM05D006363 ORTHO05D007920 1.3e-13 80.9 70 60.0
TAR624G1193 Trochodendron aralioides HOM05D006363 ORTHO05D007920 1.3e-13 80.9 70 58.6
TAR633G1276 Trochodendron aralioides HOM05D006363 ORTHO05D007920 2.8e-13 79.7 70 58.6
TAR383G0849 Trochodendron aralioides HOM05D003653 ORTHO05D004249 8.2e-13 78.2 70 57.1
TAR629G0450 Trochodendron aralioides HOM05D006363 ORTHO05D007920 1.1e-12 77.8 70 57.1
BcaC05g27871 Brassica carinata HOM05D006363 ORTHO05D007920 5.0e-10 68.9 95 48.4
A01p23910 Brassica napus HOM05D006363 ORTHO05D007920 4.4e-06 55.8 50 56.0
BraA01t02298Z Brassica rapa HOM05D006363 ORTHO05D007920 4.4e-06 55.8 50 56.0
Nitab4.5_0006622g0070 Nicotiana tabacum HOM05D006363 ORTHO05D007920 4.4e-06 55.8 66 51.5


User provided reference genes

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