Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN01G0371 Fragaria x ananassa HOM05D005277 ORTHO05D006319 2.6e-48 194.9 87 100.0
FAN06G3712 Fragaria x ananassa HOM05D005277 ORTHO05D006319 2.6e-48 194.9 87 100.0
FAN06G3877 Fragaria x ananassa HOM05D005277 ORTHO05D006319 2.6e-48 194.9 87 100.0
FAN03G2608 Fragaria x ananassa HOM05D005277 ORTHO05D006319 6.3e-47 190.3 88 98.9
RcHm_v2.0_Chr1g0353371 Rosa chinensis HOM05D005277 ORTHO05D006319 3.5e-45 184.5 84 96.4
MD01G1052300 Malus domestica HOM05D005277 ORTHO05D006319 3.9e-44 181.0 84 94.0
Prupe.2G159900 Prunus persica HOM05D005277 ORTHO05D006319 1.4e-41 172.6 84 91.7
CARHR248750 Cardamine hirsuta HOM05D005277 ORTHO05D006319 4.0e-41 171.0 86 89.5
Thhalv10026679m.g Eutrema salsugineum HOM05D005277 ORTHO05D006319 4.0e-41 171.0 86 89.5
Nn1g01427 Nelumbo nucifera HOM05D005277 ORTHO05D006319 5.2e-41 170.6 83 90.4
A03p65670 Brassica napus HOM05D005277 ORTHO05D006319 8.9e-41 169.9 86 88.4
BraA03t15618Z Brassica rapa HOM05D005277 ORTHO05D006319 8.9e-41 169.9 86 88.4
Thhalv10029049m.g Eutrema salsugineum HOM05D005277 ORTHO05D006319 2.0e-40 168.7 86 88.4
arahy.Tifrunner.gnm1.ann1.A7XXX8 Arachis hypogaea HOM05D005277 ORTHO05D006319 3.4e-40 167.9 83 85.5
arahy.Tifrunner.gnm1.ann1.I9WHAY Arachis hypogaea HOM05D005277 ORTHO05D006319 3.4e-40 167.9 83 85.5
Potri.014G079800 Populus trichocarpa HOM05D005277 ORTHO05D006319 4.4e-40 167.5 84 90.5
Sp6g00620 Schrenkiella parvula HOM05D005277 ORTHO05D006319 5.8e-40 167.2 86 86.0
AL6G52850 Arabidopsis lyrata HOM05D005277 ORTHO05D006319 1.3e-39 166.0 86 87.2
Potri.002G155800 Populus trichocarpa HOM05D005277 ORTHO05D006319 1.3e-39 166.0 84 89.3
Aa31LG5G410 Aethionema arabicum HOM05D005277 ORTHO05D006319 2.2e-39 165.2 86 86.0
MBI07_g12793_MAGBIO Magnolia biondii HOM05D005277 ORTHO05D006319 2.2e-39 165.2 85 85.9
Actinidia34103 Actinidia chinensis HOM05D005277 ORTHO05D006319 2.9e-39 164.9 84 86.9
Manes.01G260200 Manihot esculenta HOM05D005277 ORTHO05D006319 3.7e-39 164.5 84 89.3
Actinidia32868 Actinidia chinensis HOM05D005277 ORTHO05D006319 6.4e-39 163.7 84 85.7
Carub.0006s3664 Capsella rubella HOM05D005277 ORTHO05D006319 6.4e-39 163.7 86 86.0
CsaV3_2G015020 Cucumis sativus L. HOM05D005277 ORTHO05D006319 6.4e-39 163.7 84 88.1
Hma1.2p1_2482F.1_g323010 Hydrangea macrophylla HOM05D005277 ORTHO05D006319 8.3e-39 163.3 84 85.7
C07p62700 Brassica napus HOM05D005277 ORTHO05D006319 1.1e-38 162.9 86 86.0
BolC7t46684H Brassica oleracea HOM05D005277 ORTHO05D006319 1.1e-38 162.9 86 86.0
ClCG11G004150 Citrullus lanatus HOM05D005277 ORTHO05D006319 1.1e-38 162.9 84 89.3
Gorai.004G156900 Gossypium raimondii HOM05D005277 ORTHO05D006319 1.1e-38 162.9 84 85.7
CSS0040378 Camellia sinensis var. sinensis HOM05D005277 ORTHO05D006319 1.4e-38 162.5 84 84.5
MELO3C023322.2 Cucumis melo HOM05D005277 ORTHO05D006319 1.9e-38 162.2 84 85.7
Duzib133G1303 Durio zibethinus HOM05D005277 ORTHO05D006319 2.4e-38 161.8 83 85.5
Manes.05G038000 Manihot esculenta HOM05D005277 ORTHO05D006319 2.4e-38 161.8 84 88.1
Duzib138G0488 Durio zibethinus HOM05D005277 ORTHO05D006319 3.2e-38 161.4 83 85.5
Oeu021782.1 Olea europaea HOM05D005277 ORTHO05D006319 3.2e-38 161.4 85 85.9
THA.LOC104801449 Tarenaya hassleriana HOM05D005277 ORTHO05D006319 3.2e-38 161.4 87 85.1
Cfa003961 Carpinus fangiana HOM05D005277 ORTHO05D006319 4.1e-38 161.0 83 85.5
AT4G00585 Arabidopsis thaliana HOM05D005277 ORTHO05D006319 7.0e-38 160.2 86 83.7
Gohir.A08G129800 Gossypium hirsutum HOM05D005277 ORTHO05D006319 7.0e-38 160.2 84 85.7
BcaNung07162 Brassica carinata HOM05D005277 ORTHO05D006319 9.2e-38 159.8 86 84.9
CiPaw.02G027600 Carya illinoinensis HOM05D005277 ORTHO05D006319 9.2e-38 159.8 83 84.3
Thecc.01G365200 Theobroma cacao HOM05D005277 ORTHO05D006319 9.2e-38 159.8 84 85.7
Sc23g0003110 Simmondsia chinensis HOM05D005277 ORTHO05D006319 1.6e-37 159.1 84 82.1
Sed0006100 Sechium edule HOM05D005277 ORTHO05D006319 2.0e-37 158.7 84 82.1
BcaC01g06868 Brassica carinata HOM05D005277 ORTHO05D006319 2.7e-37 158.3 78 89.7
CANSAT56G2015 Cannabis sativa HOM05D005277 ORTHO05D006319 2.7e-37 158.3 86 84.9
Os09g0560300 Oryza sativa ssp. japonica HOM05D005277 ORTHO05D006319 2.7e-37 158.3 84 84.5
GSVIVG01026823001 Vitis vinifera HOM05D005277 ORTHO05D006319 2.7e-37 158.3 84 84.5
Gohir.D07G149400 Gossypium hirsutum HOM05D005277 ORTHO05D006319 3.5e-37 157.9 85 84.7
Gorai.001G170800 Gossypium raimondii HOM05D005277 ORTHO05D006319 3.5e-37 157.9 85 84.7
BcaC04g24159 Brassica carinata HOM05D005277 ORTHO05D006319 4.6e-37 157.5 86 83.7
Ciclev10023111m.g Citrus clementina HOM05D005277 ORTHO05D006319 4.6e-37 157.5 85 84.7
BolC3t16185H Brassica oleracea HOM05D005277 ORTHO05D006319 6.0e-37 157.1 86 84.9
COL.COLO4_12662 Corchorus olitorius HOM05D005277 ORTHO05D006319 6.0e-37 157.1 83 84.3
CiPaw.01G056300 Carya illinoinensis HOM05D005277 ORTHO05D006319 7.8e-37 156.8 83 83.1
CDE05G2617 Ceratophyllum demersum HOM05D005277 ORTHO05D006319 7.8e-37 156.8 84 82.1
THA.LOC104817018 Tarenaya hassleriana HOM05D005277 ORTHO05D006319 7.8e-37 156.8 78 89.7
EL10Ac1g00522 Beta vulgaris HOM05D005277 ORTHO05D006319 1.0e-36 156.4 84 79.8
A09p00410 Brassica napus HOM05D005277 ORTHO05D006319 1.0e-36 156.4 86 86.0
CDE06G0676 Ceratophyllum demersum HOM05D005277 ORTHO05D006319 1.0e-36 156.4 81 84.0
TWI59G0525 Tripterygium wilfordii HOM05D005277 ORTHO05D006319 1.0e-36 156.4 85 82.4
Nitab4.5_0000080g0040 Nicotiana tabacum HOM05D005277 ORTHO05D006319 1.3e-36 156.0 83 80.7
Hund16947 Selenicereus undatus HOM05D005277 ORTHO05D006319 1.3e-36 156.0 84 79.8
Gohir.A07G143600 Gossypium hirsutum HOM05D005277 ORTHO05D006319 1.7e-36 155.6 85 83.5
TWI23G0263 Tripterygium wilfordii HOM05D005277 ORTHO05D006319 1.7e-36 155.6 85 81.2
BcaB01g02260 Brassica carinata HOM05D005277 ORTHO05D006319 2.3e-36 155.2 73 91.8
A03p32120 Brassica napus HOM05D005277 ORTHO05D006319 2.3e-36 155.2 86 84.9
BraA03t12382Z Brassica rapa HOM05D005277 ORTHO05D006319 2.3e-36 155.2 86 84.9
Peaxi162Scf01969g00020 Petunia axillaris HOM05D005277 ORTHO05D006319 3.0e-36 154.8 84 81.0
HPP92_016701 Vanilla planifolia HOM05D005277 ORTHO05D006319 3.0e-36 154.8 87 81.6
BcaNung05357 Brassica carinata HOM05D005277 ORTHO05D006319 6.6e-36 153.7 78 87.2
Lj1g0008169 Lotus japonicus HOM05D005277 ORTHO05D006319 6.6e-36 153.7 83 84.3
Zm00001eb104680 Zea mays HOM05D005277 ORTHO05D006319 6.6e-36 153.7 83 83.1
Gohir.D08G151200 Gossypium hirsutum HOM05D005277 ORTHO05D006319 8.6e-36 153.3 84 81.0
Sed0005058 Sechium edule HOM05D005277 ORTHO05D006319 8.6e-36 153.3 84 81.0
Lsat_1_v5_gn_8_8281 Lactuca sativa HOM05D005277 ORTHO05D006319 1.5e-35 152.5 87 79.3
PSO782G2674 Papaver somniferum HOM05D005277 ORTHO05D006319 1.5e-35 152.5 89 79.8
Phvul.008G068800 Phaseolus vulgaris HOM05D005277 ORTHO05D006319 1.5e-35 152.5 83 81.9
Medtr7g076630 Medicago truncatula HOM05D005277 ORTHO05D006319 2.5e-35 151.8 85 81.2
Lalb_Chr01g0021101 Lupinus albus HOM05D005277 ORTHO05D006319 3.3e-35 151.4 84 81.0
TPR.G37794 Trifolium pratense HOM05D005277 ORTHO05D006319 3.3e-35 151.4 84 83.3
Glyma.09G263000 Glycine max HOM05D005277 ORTHO05D006319 4.3e-35 151.0 84 81.0
Lalb_Chr19g0127071 Lupinus albus HOM05D005277 ORTHO05D006319 4.3e-35 151.0 86 82.6
Nitab4.5_0000716g0150 Nicotiana tabacum HOM05D005277 ORTHO05D006319 7.3e-35 150.2 83 78.3
Nitab4.5_0003365g0020 Nicotiana tabacum HOM05D005277 ORTHO05D006319 7.3e-35 150.2 83 78.3
Psat3g111720 Pisum sativum HOM05D005277 ORTHO05D006319 7.3e-35 150.2 84 82.1
PGR042G3267 Punica granatum HOM05D005277 ORTHO05D006319 1.6e-34 149.1 83 78.3
Aqoxy7G00369 Aquilegia oxysepala HOM05D005277 ORTHO05D006319 2.1e-34 148.7 84 81.0
ECA233G3829 Erigeron canadensis HOM05D005277 ORTHO05D006319 2.8e-34 148.3 83 77.1
Glyma.18G229200 Glycine max HOM05D005277 ORTHO05D006319 2.8e-34 148.3 84 79.8
Solyc03g025910.3 Solanum lycopersicum HOM05D005277 ORTHO05D006319 3.6e-34 147.9 83 78.3
Sopen03g004720 Solanum pennellii HOM05D005277 ORTHO05D006319 3.6e-34 147.9 83 78.3
PGSC0003DMG400014288 Solanum tuberosum HOM05D005277 ORTHO05D006319 3.6e-34 147.9 83 78.3
Migut.F00352 Erythranthe guttata HOM05D005277 ORTHO05D006319 4.7e-34 147.5 83 79.5
Peaxi162Scf00915g00031 Petunia axillaris HOM05D005277 ORTHO05D006319 4.7e-34 147.5 83 77.1
C03p39140 Brassica napus HOM05D005277 ORTHO05D006319 1.1e-33 146.4 74 86.5
Ca_07884_v3 Cicer arietinum L. HOM05D005277 ORTHO05D006319 1.1e-33 146.4 84 81.0
Sc02g0002070 Simmondsia chinensis HOM05D003698 ORTHO05D004320 1.4e-33 146.0 82 78.0
vmacro06693 Vaccinium macrocarpon HOM05D005277 ORTHO05D006319 2.3e-33 145.2 83 77.1
HanXRQChr08g0209231 Helianthus annuus HOM05D005277 ORTHO05D006319 8.9e-33 143.3 83 75.9
HanXRQChr02g0054711 Helianthus annuus HOM05D005277 ORTHO05D006319 1.5e-32 142.5 83 78.3
AUR62004311 Chenopodium quinoa HOM05D005277 ORTHO05D006319 5.8e-32 140.6 78 76.9
AUR62022763 Chenopodium quinoa HOM05D005277 ORTHO05D006319 9.8e-32 139.8 78 76.9
SalBow2G0266 Salvia bowleyana HOM05D005277 ORTHO05D006319 4.1e-30 134.4 95 65.3
Cc00_g02540 Coffea canephora HOM05D005277 ORTHO05D006319 5.4e-30 134.0 77 77.9
RcHm_v2.0_Chr1g0353261 Rosa chinensis HOM05D005277 ORTHO05D006319 1.2e-29 132.9 63 93.7
RcHm_v2.0_Chr1g0353351 Rosa chinensis HOM05D005277 ORTHO05D006319 2.7e-29 131.7 62 93.5
GSVIVG01010541001 Vitis vinifera HOM05D005277 ORTHO05D006319 2.7e-29 131.7 61 90.2
DCAR_018191 Daucus carota HOM05D005277 ORTHO05D006319 2.3e-28 128.6 74 74.3
Cc02_g03110 Coffea canephora HOM05D005277 ORTHO05D006319 4.3e-27 124.4 61 86.9
Rhsim03G0179700 Rhododendron simsii HOM05D005277 ORTHO05D006319 4.7e-26 120.9 153 44.4
RcHm_v2.0_Chr0c39g0503241 Rosa chinensis HOM05D005277 ORTHO05D006319 1.2e-24 116.3 61 88.5
RcHm_v2.0_Chr1g0353201 Rosa chinensis HOM05D005277 ORTHO05D006319 1.2e-24 116.3 61 88.5
Sp7g35520 Schrenkiella parvula HOM05D002845 ORTHO05D006319 4.4e-24 114.4 61 86.9
Pp3c7_13700 Physcomitrium patens HOM05D005277 ORTHO05D006319 1.7e-23 112.5 84 61.9
MBI06_g06483_MAGBIO Magnolia biondii HOM05D005277 ORTHO05D006319 3.7e-23 111.3 64 82.8
Hund27308 Selenicereus undatus HOM05D005277 ORTHO05D006319 3.7e-23 111.3 62 80.6
unitig_0.g2484 Utricularia gibba HOM05D002154 ORTHO05D002362 4.9e-23 110.9 60 81.7
Haze_15461 Corylus avellana HOM05D005277 ORTHO05D006319 6.4e-23 110.5 62 82.3
Sabra14G0058000 Salix brachista HOM05D005277 ORTHO05D006319 1.1e-22 109.8 61 86.9
QL08p049830 Quercus lobata HOM05D005277 ORTHO05D006319 1.4e-22 109.4 60 81.7
Mapoly0023s0078 Marchantia polymorpha HOM05D005277 ORTHO05D006319 2.4e-22 108.6 81 61.7
Nitab4.5_0008315g0010 Nicotiana tabacum HOM05D005277 ORTHO05D006319 3.2e-22 108.2 61 77.0
Cpa.g.c32742 Carica papaya HOM05D005277 ORTHO05D006319 7.1e-22 107.1 62 79.0
C09p00490 Brassica napus HOM05D005277 ORTHO05D006319 2.7e-21 105.1 61 82.0
Atru.chr5.442 Acer truncatum HOM05D005277 ORTHO05D006319 3.5e-21 104.8 60 78.3
BolC9t52983H Brassica oleracea HOM05D005277 ORTHO05D006319 3.5e-21 104.8 61 82.0
HPP92_028083 Vanilla planifolia HOM05D005277 ORTHO05D006319 4.6e-21 104.4 66 77.3
BraA09t35720Z Brassica rapa HOM05D005277 ORTHO05D006319 6.0e-21 104.0 61 85.2
BcaNung05359 Brassica carinata HOM05D005277 ORTHO05D006319 7.8e-21 103.6 53 90.6
Zm00001eb320330 Zea mays HOM05D005277 ORTHO05D006319 7.8e-21 103.6 61 80.3
Ah.05g176400 Amaranthus hybridus HOM05D005277 ORTHO05D006319 3.0e-20 101.7 61 73.8
CSS0022794 Camellia sinensis var. sinensis HOM05D005277 ORTHO05D006319 5.1e-20 100.9 61 75.4
SMO203G0011 Selaginella moellendorffii HOM05D005277 ORTHO05D006319 5.1e-20 100.9 61 63.9
ATR0721G079 Amborella trichopoda HOM05D005277 ORTHO05D006319 6.6e-20 100.5 60 73.3
ATR0763G077 Amborella trichopoda HOM05D005277 ORTHO05D006319 6.6e-20 100.5 59 74.6
SHI13469 Sapria himalayana HOM05D005277 ORTHO05D006319 2.5e-19 98.6 62 75.8
ATR0174G019 Amborella trichopoda HOM05D005277 ORTHO05D006319 3.6e-18 94.7 59 71.2
CSS0038928 Camellia sinensis var. sinensis HOM05D005277 ORTHO05D006319 1.5e-16 89.4 61 67.2
FAN10G1490 Fragaria x ananassa HOM05D005277 ORTHO05D006319 7.6e-16 87.0 39 97.4
AagrBONN_evm.TU.Sc2ySwM_369.4 Anthoceros agrestis HOM05D005277 ORTHO05D006319 3.2e-14 81.6 78 55.1
PRCOL_00003506 Prasinoderma coloniale HOM05D005277 ORTHO05D006319 2.1e-13 79.0 62 54.8
MCO13G435 Micromonas commoda HOM05D005277 ORTHO05D006319 3.0e-12 75.1 71 54.9


User provided reference genes

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