Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FvH4_7g18930 Fragaria vesca HOM05D004561 ORTHO05D005315 4.6e-141 504.6 262 100.0
FAN06G3856 Fragaria x ananassa HOM05D004561 ORTHO05D005315 4.6e-141 504.6 262 100.0
FAN08G3218 Fragaria x ananassa HOM05D004561 ORTHO05D005315 3.6e-138 495.0 262 98.5
FAN06G2746 Fragaria x ananassa HOM05D004561 ORTHO05D005315 6.8e-137 490.7 254 100.0
FvH4_5g18940 Fragaria vesca HOM05D004561 ORTHO05D005315 4.9e-135 484.6 262 96.2
FAN04G2378 Fragaria x ananassa HOM05D004561 ORTHO05D005315 4.3e-131 471.5 250 98.4
RcHm_v2.0_Chr7g0203331 Rosa chinensis HOM05D004561 ORTHO05D005315 2.3e-124 449.1 262 87.8
FAN18G3337 Fragaria x ananassa HOM05D004561 ORTHO05D005315 1.1e-118 430.3 208 98.1
FAN13G2292 Fragaria x ananassa HOM05D004561 ORTHO05D005315 1.4e-118 429.9 207 98.1
Prupe.5G069900 Prunus persica HOM05D004561 ORTHO05D005315 6.7e-116 421.0 262 76.3
CiPaw.15G149700 Carya illinoinensis HOM05D004561 ORTHO05D005315 1.1e-102 377.1 261 68.2
QL09p040874 Quercus lobata HOM05D004561 ORTHO05D005315 1.0e-100 370.5 261 66.7
Hma1.2p1_0018F.1_g012650 Hydrangea macrophylla HOM05D004561 ORTHO05D005315 3.9e-100 368.6 260 65.4
MD16G1270300 Malus domestica HOM05D004561 ORTHO05D005315 2.2e-98 362.8 206 80.1
CSS0045511 Camellia sinensis var. sinensis HOM05D004561 ORTHO05D005315 6.3e-98 361.3 262 65.6
Dinv14864 Davidia involucrata HOM05D004561 ORTHO05D005315 1.4e-97 360.1 261 67.4
Potri.012G041700 Populus trichocarpa HOM05D004561 ORTHO05D005315 4.1e-97 358.6 263 65.0
GSVIVG01028605001 Vitis vinifera HOM05D004561 ORTHO05D005315 9.0e-97 357.5 262 65.6
Thecc.01G124300 Theobroma cacao HOM05D004561 ORTHO05D005315 3.4e-96 355.5 262 65.6
Sabra12G0028700 Salix brachista HOM05D004561 ORTHO05D005315 5.9e-96 354.8 263 64.3
COL.COLO4_13996 Corchorus olitorius HOM05D004561 ORTHO05D005315 3.2e-94 349.0 262 65.3
Eucgr.B03172 Eucalyptus grandis HOM05D004561 ORTHO05D005315 9.4e-94 347.4 264 61.7
TWI15G0666 Tripterygium wilfordii HOM05D004561 ORTHO05D005315 1.2e-93 347.1 260 63.1
Manes.08G062966 Manihot esculenta HOM05D004561 ORTHO05D005315 1.8e-92 343.2 260 63.1
Lj1A1185G61 Lonicera japonica HOM05D004561 ORTHO05D005315 3.9e-92 342.0 298 57.7
HanXRQChr15g0480201 Helianthus annuus HOM05D004561 ORTHO05D005315 6.7e-92 341.3 260 60.8
Sed0015683 Sechium edule HOM05D004561 ORTHO05D005315 8.8e-92 340.9 261 63.2
TAR628G1415 Trochodendron aralioides HOM05D004561 ORTHO05D005315 1.1e-91 340.5 262 63.0
CsaV3_1G002780 Cucumis sativus L. HOM05D004561 ORTHO05D005315 2.5e-91 339.3 262 62.6
TWI81G0190 Tripterygium wilfordii HOM05D004561 ORTHO05D005315 5.7e-91 338.2 260 62.3
Atru.chr13.142 Acer truncatum HOM05D004561 ORTHO05D005315 7.4e-91 337.8 259 63.7
FAN18G2677 Fragaria x ananassa HOM05D004561 ORTHO05D005315 7.4e-91 337.8 187 88.8
Ciclev10002226m.g Citrus clementina HOM05D004561 ORTHO05D005315 1.7e-90 336.7 260 61.5
Lalb_Chr12g0208781 Lupinus albus HOM05D004561 ORTHO05D005315 2.2e-90 336.3 263 62.4
MSTRG.11225 Avicennia marina HOM05D004561 ORTHO05D005315 2.8e-90 335.9 261 60.9
PGSC0003DMG400009224 Solanum tuberosum HOM05D004561 ORTHO05D005315 2.8e-90 335.9 262 61.1
Solyc08g074360.3 Solanum lycopersicum HOM05D004561 ORTHO05D005315 6.3e-90 334.7 262 59.9
MSTRG.22847 Avicennia marina HOM05D004561 ORTHO05D005315 3.1e-89 332.4 262 59.5
Migut.I00621 Erythranthe guttata HOM05D004561 ORTHO05D005315 4.1e-89 332.0 262 63.0
Gorai.012G033300 Gossypium raimondii HOM05D004561 ORTHO05D005315 4.1e-89 332.0 262 61.5
CAN.G370.25 Capsicum annuum HOM05D004561 ORTHO05D005315 6.9e-89 331.3 260 60.4
MELO3C017214.2 Cucumis melo HOM05D004561 ORTHO05D005315 6.9e-89 331.3 262 61.1
Lj4g0004659 Lotus japonicus HOM05D004561 ORTHO05D005315 9.1e-89 330.9 262 61.8
Sopen08g023020 Solanum pennellii HOM05D004561 ORTHO05D005315 1.2e-88 330.5 262 60.3
Gohir.A05G386400 Gossypium hirsutum HOM05D004561 ORTHO05D005315 1.5e-88 330.1 262 61.1
Gohir.D04G023500 Gossypium hirsutum HOM05D004561 ORTHO05D005315 2.0e-88 329.7 262 61.1
Solyc11g017400.2 Solanum lycopersicum HOM05D004561 ORTHO05D005315 2.6e-88 329.3 262 60.7
Glyma.08G081300 Glycine max HOM05D004561 ORTHO05D005315 4.5e-88 328.6 259 62.9
Lsat_1_v5_gn_7_30581 Lactuca sativa HOM05D004561 ORTHO05D005315 4.5e-88 328.6 261 60.5
Psat1g047920 Pisum sativum HOM05D004561 ORTHO05D005315 1.7e-87 326.6 263 62.7
Sc18g0002470 Simmondsia chinensis HOM05D004561 ORTHO05D005315 2.2e-87 326.2 260 57.7
TPR.G30372 Trifolium pratense HOM05D004561 ORTHO05D005315 3.8e-87 325.5 262 61.5
Medtr4g094538 Medicago truncatula HOM05D004561 ORTHO05D005315 5.0e-87 325.1 262 61.5
Peaxi162Scf00152g00158 Petunia axillaris HOM05D004561 ORTHO05D005315 1.4e-86 323.6 265 59.6
BraA07t30043Z Brassica rapa HOM05D004561 ORTHO05D005315 4.2e-86 322.0 261 58.6
Sp5g04590 Schrenkiella parvula HOM05D004561 ORTHO05D005315 5.5e-86 321.6 260 59.6
ClCG06G015750 Citrullus lanatus HOM05D000113 ORTHO05D002571 2.7e-85 319.3 241 62.7
VMungo0251G0557 Vigna mungo HOM05D004561 ORTHO05D005315 2.7e-85 319.3 207 70.5
THA.LOC104822320 Tarenaya hassleriana HOM05D004561 ORTHO05D005315 4.7e-85 318.5 259 59.8
SalBow3G1851 Salvia bowleyana HOM05D004561 ORTHO05D005315 6.1e-85 318.2 274 56.6
Nitab4.5_0000422g0080 Nicotiana tabacum HOM05D004561 ORTHO05D005315 7.9e-85 317.8 244 63.1
Glyma.05G126500 Glycine max HOM05D004561 ORTHO05D005315 1.0e-84 317.4 279 56.6
Nn5g27375 Nelumbo nucifera HOM05D004561 ORTHO05D005315 1.4e-84 317.0 260 57.3
A07p23920 Brassica napus HOM05D004561 ORTHO05D005315 8.8e-84 314.3 260 57.7
Cc03_g07430 Coffea canephora HOM05D004561 ORTHO05D005315 8.8e-84 314.3 262 59.5
ECA233G0879 Erigeron canadensis HOM05D004561 ORTHO05D005315 1.5e-83 313.5 260 56.2
BcaB02g07548 Brassica carinata HOM05D004561 ORTHO05D005315 2.0e-83 313.2 280 54.6
Oeu031248.3 Olea europaea HOM05D004561 ORTHO05D005315 2.0e-83 313.2 292 54.1
Hund26218 Selenicereus undatus HOM05D004561 ORTHO05D005315 3.3e-83 312.4 206 68.9
BolC6t37673H Brassica oleracea HOM05D004561 ORTHO05D005315 5.7e-83 311.6 260 57.7
PGSC0003DMG403029595 Solanum tuberosum HOM05D004561 ORTHO05D005315 5.7e-83 311.6 241 60.6
CARHR168490 Cardamine hirsuta HOM05D004561 ORTHO05D005315 7.4e-83 311.2 260 57.7
AL5G39820 Arabidopsis lyrata HOM05D004561 ORTHO05D005315 2.8e-82 309.3 260 57.3
Phvul.002G198500 Phaseolus vulgaris HOM05D004561 ORTHO05D005315 6.3e-82 308.1 200 71.5
Aqoxy6G01699 Aquilegia oxysepala HOM05D004561 ORTHO05D005315 8.2e-82 307.8 260 57.7
AUR62010959 Chenopodium quinoa HOM05D004561 ORTHO05D005315 1.4e-81 307.0 240 61.2
Carub.0005s2498 Capsella rubella HOM05D004561 ORTHO05D005315 2.4e-81 306.2 260 55.4
SGA_v2.0_scaffold37G14646 Striga asiatica HOM05D004561 ORTHO05D005315 2.4e-81 306.2 238 60.9
AT3G58130 Arabidopsis thaliana HOM05D004561 ORTHO05D005315 5.3e-81 305.1 260 57.3
AUR62007426 Chenopodium quinoa HOM05D004561 ORTHO05D005315 9.1e-81 304.3 240 60.4
vmacro18667 Vaccinium macrocarpon HOM05D004561 ORTHO05D005315 2.6e-80 302.8 326 50.0
PSO210G6857 Papaver somniferum HOM05D004561 ORTHO05D005315 4.5e-80 302.0 260 56.2
Thhalv10002077m.g Eutrema salsugineum HOM05D004561 ORTHO05D005315 5.9e-80 301.6 264 57.2
Rhsim06G0237000 Rhododendron simsii HOM05D004561 ORTHO05D005315 5.9e-80 301.6 291 51.5
C06p25150 Brassica napus HOM05D004561 ORTHO05D005315 7.7e-80 301.2 302 51.0
AT2G27340 Arabidopsis thaliana HOM05D004561 ORTHO05D005315 1.3e-79 300.4 257 56.4
RcHm_v2.0_Chr7g0203411 Rosa chinensis HOM05D004561 ORTHO05D005315 1.1e-78 297.4 233 64.4
BcaC08g44900 Brassica carinata HOM05D004561 ORTHO05D005315 4.2e-78 295.4 260 55.4
Thhalv10002036m.g Eutrema salsugineum HOM05D004561 ORTHO05D005315 2.7e-77 292.7 258 56.2
unitig_744.g24647 Utricularia gibba HOM05D004561 ORTHO05D005315 9.7e-75 284.3 277 52.7
SalBow1G5912 Salvia bowleyana HOM05D004561 ORTHO05D005315 2.2e-74 283.1 200 65.5
Peaxi162Scf00310g00711 Petunia axillaris HOM05D004561 ORTHO05D005315 8.2e-74 281.2 236 58.5
EL10Ac8g18446 Beta vulgaris HOM05D004561 ORTHO05D005315 1.1e-73 280.8 242 56.6
C08p33660 Brassica napus HOM05D004561 ORTHO05D005315 3.1e-73 279.3 260 52.7
CDE04G2633 Ceratophyllum demersum HOM05D004561 ORTHO05D005315 3.1e-73 279.3 206 58.7
AUR62021469 Chenopodium quinoa HOM05D004561 ORTHO05D005315 4.1e-73 278.9 198 65.7
Zm00001eb433850 Zea mays HOM05D004561 ORTHO05D005315 7.0e-73 278.1 261 51.0
ATR0661G441 Amborella trichopoda HOM05D004561 ORTHO05D005315 3.8e-71 272.3 261 52.9
Lj6g0005186 Lotus japonicus HOM05D004561 ORTHO05D005315 2.5e-70 269.6 222 58.1
DCAR_002722 Daucus carota HOM05D004561 ORTHO05D005315 5.5e-70 268.5 183 66.7
Os04g0678800 Oryza sativa ssp. japonica HOM05D004561 ORTHO05D005315 8.0e-69 264.6 261 51.7
BcaC07g40276 Brassica carinata HOM05D004561 ORTHO05D005315 7.5e-67 258.1 209 58.4
Sopen11g009350 Solanum pennellii HOM05D004561 ORTHO05D005315 1.7e-66 256.9 182 63.2
Aa31LG10G12840 Aethionema arabicum HOM05D004561 ORTHO05D005315 6.3e-66 255.0 300 46.3
SHI05351 Sapria himalayana HOM05D004561 ORTHO05D005315 9.1e-65 251.1 209 56.5
arahy.Tifrunner.gnm1.ann1.AX2CN5 Arachis hypogaea HOM05D004561 ORTHO05D005315 4.7e-61 238.8 267 49.1
CAN.G1530.1 Capsicum annuum HOM05D004561 ORTHO05D005315 1.1e-57 227.6 188 56.9
A09p50910 Brassica napus HOM05D004561 ORTHO05D005315 5.9e-56 221.9 208 54.3
Pp3c13_19470 Physcomitrium patens HOM05D004561 ORTHO05D005315 1.9e-54 216.9 212 48.1
vmacro21453 Vaccinium macrocarpon HOM05D004561 ORTHO05D005315 4.2e-54 215.7 196 54.1
arahy.Tifrunner.gnm1.ann1.3X42ZC Arachis hypogaea HOM05D004561 ORTHO05D005315 1.8e-52 210.3 173 57.8
HPP92_027560 Vanilla planifolia HOM05D004561 ORTHO05D005315 2.6e-51 206.5 191 52.4
BolC8t50963H Brassica oleracea HOM05D004561 ORTHO05D005315 1.1e-49 201.1 172 55.2
AagrBONN_evm.TU.Sc2ySwM_368.3407 Anthoceros agrestis HOM05D004561 ORTHO05D005315 4.1e-49 199.1 218 47.2
ECA236G3170 Erigeron canadensis HOM05D004561 ORTHO05D005315 4.1e-49 199.1 141 61.0
Cpa.g.sc437.1 Carica papaya HOM05D004561 ORTHO05D005315 1.2e-48 197.6 130 67.7
Carub.0339s0001 Capsella rubella HOM05D004561 ORTHO05D005315 2.0e-48 196.8 141 63.1
BcaC07g40185 Brassica carinata HOM05D004561 ORTHO05D005315 3.9e-47 192.6 206 48.5
AUR62002652 Chenopodium quinoa HOM05D004561 ORTHO05D005315 1.1e-46 191.0 190 49.5
Zm00001eb066050 Zea mays HOM05D004561 ORTHO05D005315 1.6e-45 187.2 187 49.7
Haze_18936 Corylus avellana HOM05D004561 ORTHO05D005315 2.1e-45 186.8 169 55.6
MD06G1059000 Malus domestica HOM05D004561 ORTHO05D005315 2.8e-45 186.4 115 73.9
PSO761G0502 Papaver somniferum HOM05D004561 ORTHO05D005315 6.1e-45 185.3 179 52.0
CiPaw.16G098200 Carya illinoinensis HOM05D004561 ORTHO05D005315 5.2e-44 182.2 152 56.6
Nitab4.5_0000560g0110 Nicotiana tabacum HOM05D004561 ORTHO05D005315 1.7e-42 177.2 154 56.5
Mapoly0029s0047 Marchantia polymorpha HOM05D004561 ORTHO05D005315 2.4e-41 173.3 198 44.9
Sopen08g022960 Solanum pennellii HOM05D004561 ORTHO05D005315 4.0e-36 156.0 133 57.9
Hund02231 Selenicereus undatus HOM05D004561 ORTHO05D005315 1.2e-35 154.5 185 45.4
CSS0036958 Camellia sinensis var. sinensis HOM05D004561 ORTHO05D005315 1.2e-32 144.4 86 73.3
Carub.0008s0419 Capsella rubella HOM05D004561 ORTHO05D005315 1.6e-32 144.1 128 53.9
CSS0005948 Camellia sinensis var. sinensis HOM05D004561 ORTHO05D005315 7.8e-32 141.7 86 72.1
CSS0005045 Camellia sinensis var. sinensis HOM05D004561 ORTHO05D005315 1.0e-31 141.4 86 72.1
CSS0006634 Camellia sinensis var. sinensis HOM05D004561 ORTHO05D005315 3.0e-31 139.8 86 69.8
MCO09G807 Micromonas commoda HOM05D004561 ORTHO05D005315 3.9e-31 139.4 208 39.9
Hund26251 Selenicereus undatus HOM05D004561 ORTHO05D005315 8.6e-31 138.3 103 62.1
Sopen05g006540 Solanum pennellii HOM05D004561 ORTHO05D005315 1.5e-27 127.5 150 45.3
SalBow1G4548 Salvia bowleyana HOM05D004561 ORTHO05D005315 3.4e-27 126.3 108 54.6
arahy.Tifrunner.gnm1.ann1.Y05SLV Arachis hypogaea HOM05D004561 ORTHO05D005315 8.3e-26 121.7 97 61.9
CBR_g12600 Chara braunii HOM05D005240 ORTHO05D006471 1.4e-25 120.9 269 32.0
Cre06.g300100 Chlamydomonas reinhardtii HOM05D004561 ORTHO05D005315 7.8e-24 115.2 250 31.6
PRCOL_00001899 Prasinoderma coloniale HOM05D004561 ORTHO05D005315 6.6e-23 112.1 215 32.1
SalBow1G7315 Salvia bowleyana HOM05D004561 ORTHO05D005315 1.9e-22 110.5 241 34.0
RcHm_v2.0_Chr7g0204201 Rosa chinensis HOM05D004561 ORTHO05D005315 3.3e-22 109.8 83 75.9
SalBow1G5331 Salvia bowleyana HOM05D004561 ORTHO05D005315 1.2e-21 107.8 67 65.7
RcHm_v2.0_Chr7g0204241 Rosa chinensis HOM05D004561 ORTHO05D005315 1.6e-21 107.5 90 61.1
SalBow1G4039 Salvia bowleyana HOM05D004561 ORTHO05D005315 1.6e-21 107.5 67 61.2
SalBow1G2796 Salvia bowleyana HOM05D004561 ORTHO05D005315 3.6e-21 106.3 67 64.2
Cpa.g.c32558.1 Carica papaya HOM05D004561 ORTHO05D005315 8.1e-21 105.1 65 70.8
MBI08_g32523_MAGBIO Magnolia biondii HOM05D004561 ORTHO05D005315 4.0e-20 102.8 75 60.0
SEGI_12631 Sequoiadendron giganteum HOM05D004561 ORTHO05D005315 1.5e-19 100.9 90 50.0
Nitab4.5_0013603g0010 Nicotiana tabacum HOM05D004561 ORTHO05D005315 2.6e-19 100.1 72 62.5
Solyc05g010730.3 Solanum lycopersicum HOM05D004561 ORTHO05D005315 2.2e-18 97.1 69 63.8
FvH4_5g18980 Fragaria vesca HOM05D004561 ORTHO05D005315 1.6e-13 80.9 48 77.1
SalBow1G0427 Salvia bowleyana HOM05D006885 ORTHO05D008606 2.8e-13 80.1 59 57.6
SHI05852 Sapria himalayana HOM05D000002 ORTHO05D000001 8.1e-13 78.6 83 51.8
SalBow1G6765 Salvia bowleyana HOM05D004561 ORTHO05D005315 2.4e-12 77.0 84 48.8
Ca_17309_v3 Cicer arietinum L. HOM05D002967 ORTHO05D003281 3.2e-09 66.6 60 48.3
SHI05350 Sapria himalayana HOM05D004561 ORTHO05D005315 1.7e-07 60.8 137 29.2
Cc05_g02560 Coffea canephora HOM05D004561 ORTHO05D005315 2.3e-07 60.5 77 42.9


User provided reference genes

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