Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN06G3804 Fragaria x ananassa HOM05D006627 ORTHO05D007753 0.0e+00 2431.0 1243 100.0
FAN06G3118 Fragaria x ananassa HOM05D006627 ORTHO05D007753 0.0e+00 2398.6 1244 99.0
FAN03G1328 Fragaria x ananassa HOM05D006627 ORTHO05D007753 0.0e+00 2290.4 1235 95.5
FAN10G1026 Fragaria x ananassa HOM05D006627 ORTHO05D007753 0.0e+00 2285.0 1223 96.5
FvH4_7g30110 Fragaria vesca HOM05D006627 ORTHO05D007753 0.0e+00 2279.2 1179 99.2
FAN10G1355 Fragaria x ananassa HOM05D006627 ORTHO05D007753 0.0e+00 2265.7 1223 96.0
FAN03G3330 Fragaria x ananassa HOM05D006627 ORTHO05D007753 0.0e+00 2261.9 1223 95.3
FAN01G2627 Fragaria x ananassa HOM05D006627 ORTHO05D007753 0.0e+00 2109.0 1145 95.2
RcHm_v2.0_Chr1g0378101 Rosa chinensis HOM05D006627 ORTHO05D007753 0.0e+00 1922.5 1189 85.6
Prupe.2G299600 Prunus persica HOM05D006627 ORTHO05D007753 0.0e+00 1232.6 1258 60.2
MD01G1207000 Malus domestica HOM05D006627 ORTHO05D007753 0.0e+00 1123.6 1333 54.5
MD07G1277900 Malus domestica HOM05D006627 ORTHO05D007753 0.0e+00 1123.6 1232 57.4
Haze_00034 Corylus avellana HOM05D006627 ORTHO05D007753 5.0e-145 520.0 1260 38.2
Thecc.03G182600 Theobroma cacao HOM05D006627 ORTHO05D007753 8.8e-134 482.6 1318 35.4
Duzib205G1471 Durio zibethinus HOM05D006627 ORTHO05D007753 1.3e-129 468.8 1286 35.2
Duzib084G0535 Durio zibethinus HOM05D006627 ORTHO05D007753 2.3e-121 441.4 1257 34.3
TWI23G0587 Tripterygium wilfordii HOM05D006627 ORTHO05D007753 2.0e-117 428.3 1228 34.0
Ciclev10004200m.g Citrus clementina HOM05D006627 ORTHO05D007753 1.1e-115 422.5 1215 34.7
Dinv28394 Davidia involucrata HOM05D006627 ORTHO05D007753 4.1e-115 420.6 1312 34.5
GSVIVG01028875001 Vitis vinifera HOM05D006627 ORTHO05D007753 1.7e-113 415.2 1238 35.3
Sabra04G0052500 Salix brachista HOM05D006627 ORTHO05D007753 2.5e-112 411.4 1298 32.6
COL.COLO4_28015 Corchorus olitorius HOM05D006627 ORTHO05D007753 7.3e-112 409.8 1164 34.8
Potri.004G079000 Populus trichocarpa HOM05D006627 ORTHO05D007753 5.2e-110 403.7 1309 32.2
Atru.chr1.386 Acer truncatum HOM05D006627 ORTHO05D007753 7.8e-106 389.8 1297 33.0
TWI14G0178 Tripterygium wilfordii HOM05D006627 ORTHO05D007753 3.3e-104 384.4 1199 32.6
Potri.017G142600 Populus trichocarpa HOM05D006627 ORTHO05D007753 3.1e-102 377.9 1226 33.0
Sabra17G0119400 Salix brachista HOM05D001410 ORTHO05D006840 2.2e-100 371.7 1270 32.6
Gohir.A10G234800 Gossypium hirsutum HOM05D006627 ORTHO05D007753 2.4e-99 368.2 1172 33.4
TAR375G0196 Trochodendron aralioides HOM05D006627 ORTHO05D007753 3.2e-99 367.9 1488 31.2
Gohir.D10G247200 Gossypium hirsutum HOM05D006627 ORTHO05D007753 4.6e-98 364.0 1170 33.3
Atru.chr1.369 Acer truncatum HOM05D006627 ORTHO05D007753 7.8e-98 363.2 1263 32.6
Atru.ctg97_1.2 Acer truncatum HOM05D006627 ORTHO05D007753 7.8e-98 363.2 1263 32.6
Gorai.011G285600 Gossypium raimondii HOM05D006627 ORTHO05D007753 7.8e-98 363.2 1170 33.3
Nn1g01607 Nelumbo nucifera HOM05D006627 ORTHO05D007753 1.5e-96 359.0 1470 30.3
Cpa.g.sc107.97 Carica papaya HOM05D006627 ORTHO05D007753 4.3e-96 357.5 1167 32.6
Nn1g01606 Nelumbo nucifera HOM05D006627 ORTHO05D007753 1.2e-95 355.9 1466 29.9
TAR629G2332 Trochodendron aralioides HOM05D006627 ORTHO05D007753 2.2e-92 345.1 1478 29.9
DCAR_020266 Daucus carota HOM05D006627 ORTHO05D007753 9.0e-86 323.2 1272 31.2
Lj1C1004T5 Lonicera japonica HOM05D006627 ORTHO05D007753 1.5e-85 322.4 1348 30.9
TAR374G1318 Trochodendron aralioides HOM05D006627 ORTHO05D007753 1.6e-79 302.4 1380 30.2
Oeu060456.3 Olea europaea HOM05D006627 ORTHO05D007753 1.6e-71 275.8 1299 29.8
Dinv38916 Davidia involucrata HOM05D006627 ORTHO05D007753 5.3e-70 270.8 1404 29.1
PSO478G1013 Papaver somniferum HOM05D006627 ORTHO05D007753 2.6e-69 268.5 1311 29.7
Actinidia34148 Actinidia chinensis HOM05D001410 ORTHO05D007753 1.0e-68 266.5 1251 31.1
PSO782G1175 Papaver somniferum HOM05D006627 ORTHO05D007753 4.2e-67 261.2 1320 29.2
Actinidia03134 Actinidia chinensis HOM05D006627 ORTHO05D007753 5.5e-67 260.8 1244 29.4
QL12p032277 Quercus lobata HOM05D006627 ORTHO05D007753 6.0e-66 257.3 1437 27.7
CSS0035854 Camellia sinensis var. sinensis HOM05D006627 ORTHO05D007753 1.3e-65 256.1 1096 30.7
CSS0044230 Camellia sinensis var. sinensis HOM05D006627 ORTHO05D007753 1.3e-65 256.1 1096 30.7
vmacro06637 Vaccinium macrocarpon HOM05D006627 ORTHO05D007753 4.3e-64 251.1 1247 28.9
MBI04_g35056_MAGBIO Magnolia biondii HOM05D006627 ORTHO05D007753 1.4e-62 246.1 1561 26.9
vmacro06638 Vaccinium macrocarpon HOM05D006627 ORTHO05D007753 8.4e-60 236.9 1220 28.2
Haze_08819 Corylus avellana HOM05D006627 ORTHO05D007753 2.5e-59 235.3 1424 29.1
Cfa012198 Carpinus fangiana HOM05D006627 ORTHO05D007753 3.9e-57 228.0 1408 27.9
Rhsim07G0129200 Rhododendron simsii HOM05D006627 ORTHO05D007753 2.2e-55 222.2 1216 28.9
Rhsim03G0190100 Rhododendron simsii HOM05D006627 ORTHO05D007753 2.8e-55 221.9 1247 27.6
Peaxi162Scf00444g00008 Petunia axillaris HOM05D006627 ORTHO05D007753 4.1e-54 218.0 1295 27.5
Cc02_g02490 Coffea canephora HOM05D006627 ORTHO05D007753 2.1e-50 205.7 1273 28.2
SalBow4G0794 Salvia bowleyana HOM05D006627 ORTHO05D007753 3.6e-50 204.9 1257 27.5
Peaxi162Scf00618g00717 Petunia axillaris HOM05D006627 ORTHO05D007753 8.8e-49 200.3 1313 27.0
Rhsim07G0129400 Rhododendron simsii HOM05D006627 ORTHO05D007753 1.1e-48 199.9 1264 26.7
Actinidia28362 Actinidia chinensis HOM05D006627 ORTHO05D007753 1.3e-47 196.4 1360 26.0
Actinidia31835 Actinidia chinensis HOM05D006627 ORTHO05D007753 9.1e-46 190.3 1082 27.0
THA.LOC104800273 Tarenaya hassleriana HOM05D008661 ORTHO05D010872 1.4e-43 183.0 1170 27.6
AUR62010719 Chenopodium quinoa HOM05D006627 ORTHO05D007753 5.5e-43 181.0 1259 27.2
GSVIVG01019397001 Vitis vinifera HOM05D006627 ORTHO05D007753 7.2e-43 180.6 1191 26.7
Dinv35242 Davidia involucrata HOM05D006627 ORTHO05D007753 3.6e-42 178.3 385 37.9
DCAR_009389 Daucus carota HOM05D006627 ORTHO05D007753 1.8e-41 176.0 1278 26.8
AUR62027265 Chenopodium quinoa HOM05D006627 ORTHO05D007753 5.1e-41 174.5 1244 26.6
EL10Ac5g12810 Beta vulgaris HOM05D006627 ORTHO05D007753 9.7e-40 170.2 1239 27.4
CAN.G236.7 Capsicum annuum HOM05D006627 ORTHO05D007753 9.7e-40 170.2 1216 25.7
MSTRG.27091 Avicennia marina HOM05D006627 ORTHO05D007753 2.8e-39 168.7 1256 27.5
Aa31LG3G8880 Aethionema arabicum HOM05D008661 ORTHO05D010872 1.1e-38 166.8 1166 27.4
HanXRQChr13g0394821 Helianthus annuus HOM05D006627 ORTHO05D007753 3.1e-38 165.2 1278 25.6
Ah.07g206700 Amaranthus hybridus HOM05D006627 ORTHO05D007753 2.0e-37 162.5 1444 25.1
ECA233G6261 Erigeron canadensis HOM05D006627 ORTHO05D007753 3.5e-37 161.8 1288 26.2
AUR62027266 Chenopodium quinoa HOM05D006627 ORTHO05D007753 5.9e-37 161.0 1193 25.6
Lsat_1_v5_gn_6_5180 Lactuca sativa HOM05D006627 ORTHO05D007753 5.9e-37 161.0 1272 26.0
Dinv35244 Davidia involucrata HOM05D006627 ORTHO05D007753 6.5e-36 157.5 219 48.9
Sc22g0005410 Simmondsia chinensis HOM05D006627 ORTHO05D007753 2.5e-35 155.6 1331 27.6
Hma1.2p1_0327F.1_g126380 Hydrangea macrophylla HOM05D006627 ORTHO05D007753 2.1e-34 152.5 593 32.9
Ah.07g196520 Amaranthus hybridus HOM05D006627 ORTHO05D007753 8.0e-34 150.6 1182 26.1
EL10Ac5g12809 Beta vulgaris HOM05D006627 ORTHO05D007753 8.0e-34 150.6 1204 27.3
AUR62031403 Chenopodium quinoa HOM05D006627 ORTHO05D007753 1.0e-33 150.2 1313 26.7
Hund11448 Selenicereus undatus HOM05D006627 ORTHO05D007753 3.0e-33 148.7 1302 27.3
EL10Ac5g12811 Beta vulgaris HOM05D006627 ORTHO05D007753 5.7e-32 144.4 1406 24.5
PGSC0003DMG400010123 Solanum tuberosum HOM05D006627 ORTHO05D007753 5.3e-30 137.9 1172 26.3
MSTRG.8718 Avicennia marina HOM05D006627 ORTHO05D007753 1.2e-29 136.7 1267 24.9
EL10Ac3g05437 Beta vulgaris HOM05D006627 ORTHO05D007753 1.2e-29 136.7 1300 25.5
Sp7g23680 Schrenkiella parvula HOM05D008661 ORTHO05D010872 2.0e-29 136.0 1062 26.5
RcHm_v2.0_Chr5g0081641 Rosa chinensis HOM05D006627 ORTHO05D007753 4.5e-29 134.8 279 38.0
Thhalv10024596m.g Eutrema salsugineum HOM05D008661 ORTHO05D010872 1.7e-28 132.9 506 33.2
Manes.02G019000 Manihot esculenta HOM05D006627 ORTHO05D007753 1.7e-28 132.9 1273 25.1
BcaB03g12481 Brassica carinata HOM05D008661 ORTHO05D010872 2.2e-28 132.5 1187 26.1
CARHR233070 Cardamine hirsuta HOM05D008661 ORTHO05D010872 9.4e-27 127.1 1175 26.3
Dinv37613 Davidia involucrata HOM05D006627 ORTHO05D007753 1.4e-25 123.2 1191 25.9
THA.LOC104811963 Tarenaya hassleriana HOM05D008661 ORTHO05D010872 1.8e-25 122.9 348 32.8
Actinidia14583 Actinidia chinensis HOM05D006627 ORTHO05D007753 3.1e-22 112.1 319 34.8
BcaB03g12479 Brassica carinata HOM05D008661 ORTHO05D010872 1.3e-20 106.7 613 30.3
BraA08t34056Z Brassica rapa HOM05D008661 ORTHO05D010872 1.7e-20 106.3 1142 25.3
Sopen03g004000 Solanum pennellii HOM05D006627 ORTHO05D007753 1.7e-20 106.3 1162 25.1
BcaC07g38204 Brassica carinata HOM05D008661 ORTHO05D010872 2.9e-20 105.5 1221 24.8
BolC8t48627H Brassica oleracea HOM05D008661 ORTHO05D010872 2.9e-20 105.5 1221 24.8
C08p09590 Brassica napus HOM05D008661 ORTHO05D010872 3.8e-20 105.1 1141 25.2
Solyc03g025150.4 Solanum lycopersicum HOM05D006627 ORTHO05D007753 1.9e-19 102.8 1130 24.7
Carub.0238s0001 Capsella rubella HOM05D008661 ORTHO05D010872 5.5e-19 101.3 414 29.2
Lsat_1_v5_gn_9_57440 Lactuca sativa HOM05D006627 ORTHO05D007753 2.7e-18 99.0 346 30.3
ATR0661G323 Amborella trichopoda HOM05D006627 ORTHO05D007753 1.8e-17 96.3 367 30.0
CARHR233080 Cardamine hirsuta HOM05D008661 ORTHO05D010872 1.8e-17 96.3 282 34.4
A08p21040 Brassica napus HOM05D008661 ORTHO05D010872 3.0e-17 95.5 404 28.5
A08p21060 Brassica napus HOM05D008661 ORTHO05D010872 6.8e-17 94.4 398 28.1
Migut.F00307 Erythranthe guttata HOM05D006627 ORTHO05D007753 1.2e-16 93.6 1122 26.1
Atru.chr9.2148 Acer truncatum HOM05D006627 ORTHO05D007753 2.0e-16 92.8 191 39.8
AL7G27440 Arabidopsis lyrata HOM05D008661 ORTHO05D010872 2.0e-16 92.8 367 30.2
Carub.0007s1533 Capsella rubella HOM05D008661 ORTHO05D010872 7.5e-16 90.9 345 29.9
CDE07G1237 Ceratophyllum demersum HOM05D006627 ORTHO05D007753 2.8e-15 89.0 747 25.4
Os08g0430000 Oryza sativa ssp. japonica HOM05D006627 ORTHO05D007753 3.7e-15 88.6 1384 24.8
unitig_46.g18802 Utricularia gibba HOM05D006627 ORTHO05D007753 3.1e-14 85.5 1177 22.8
AT5G52530 Arabidopsis thaliana HOM05D008661 ORTHO05D010872 7.0e-14 84.3 231 34.6
AL8G26990 Arabidopsis lyrata HOM05D008661 ORTHO05D010872 9.2e-14 84.0 236 34.3
ECA232G3189 Erigeron canadensis HOM05D006627 ORTHO05D007753 9.2e-14 84.0 400 29.2
HPP92_025630 Vanilla planifolia HOM05D006627 ORTHO05D007753 4.5e-13 81.6 720 25.3
TWI60G0847 Tripterygium wilfordii HOM05D006627 ORTHO05D007753 1.7e-12 79.7 279 31.9
Zm00001eb179470 Zea mays HOM05D006627 ORTHO05D007753 2.9e-12 79.0 1429 23.2
Dinv35243 Davidia involucrata HOM05D006627 ORTHO05D007753 5.6e-11 74.7 508 26.8
CDE04G0350 Ceratophyllum demersum HOM05D006627 ORTHO05D007753 1.6e-10 73.2 1074 25.1
Sp6g14700 Schrenkiella parvula HOM05D008661 ORTHO05D010872 2.1e-10 72.8 308 28.6
Carub.0008s1265 Capsella rubella HOM05D008661 ORTHO05D010872 6.1e-10 71.2 239 30.5
Atru.chr9.2147 Acer truncatum HOM05D006627 ORTHO05D007753 1.8e-09 69.7 1029 23.1
HanXRQChr09g0252481 Helianthus annuus HOM05D029832 ORTHO05D007753 4.0e-09 68.6 324 28.7
Cpa.g.sc107.94 Carica papaya HOM05D006627 ORTHO05D007753 1.2e-08 67.0 295 27.5
Lsat_1_v5_gn_2_131160 Lactuca sativa HOM05D029832 ORTHO05D007753 2.2e-07 62.8 443 24.6
BcaC04g20573 Brassica carinata HOM05D008661 ORTHO05D010872 3.7e-07 62.0 300 27.7
C09p42010 Brassica napus HOM05D008661 ORTHO05D010872 4.9e-07 61.6 300 27.7
BolC9t57083H Brassica oleracea HOM05D008661 ORTHO05D010872 4.9e-07 61.6 300 27.7
BcaB08g35607 Brassica carinata HOM05D008661 ORTHO05D010872 4.1e-06 58.5 358 26.5
BraA10t43090Z Brassica rapa HOM05D008661 ORTHO05D010872 4.1e-06 58.5 291 28.2
HanXRQChr14g0462471 Helianthus annuus HOM05D029832 ORTHO05D007753 7.0e-06 57.8 387 25.3


User provided reference genes

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