Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN06G3794 Fragaria x ananassa HOM05D005062 ORTHO05D006410 5.6e-60 234.2 126 100.0
FvH4_7g05590 Fragaria vesca HOM05D005062 ORTHO05D006410 2.4e-39 165.6 116 81.9
FAN01G3081 Fragaria x ananassa HOM05D005062 ORTHO05D006410 2.4e-39 165.6 116 81.9
FAN03G1004 Fragaria x ananassa HOM05D005062 ORTHO05D006410 2.4e-39 165.6 101 91.1
FAN10G1073 Fragaria x ananassa HOM05D005062 ORTHO05D006410 2.4e-39 165.6 116 81.9
FAN23G1474 Fragaria x ananassa HOM05D005062 ORTHO05D006410 7.8e-38 160.6 116 80.2
FAN23G1954 Fragaria x ananassa HOM05D005062 ORTHO05D006410 7.8e-38 160.6 116 80.2
FAN23G2695 Fragaria x ananassa HOM05D005062 ORTHO05D006410 7.8e-38 160.6 116 80.2
RcHm_v2.0_Chr1g0332571 Rosa chinensis HOM05D005062 ORTHO05D006410 1.2e-33 146.7 116 75.0
COL.COLO4_24555 Corchorus olitorius HOM05D005062 ORTHO05D006410 1.0e-29 133.7 100 75.0
Atru.chr12.1008 Acer truncatum HOM05D005062 ORTHO05D006410 1.3e-29 133.3 116 67.2
QL04p046667 Quercus lobata HOM05D005062 ORTHO05D006410 1.3e-29 133.3 97 74.2
PGR044G2170 Punica granatum HOM05D005062 ORTHO05D006410 1.7e-29 132.9 109 68.8
MD02G1256200 Malus domestica HOM05D005062 ORTHO05D006410 5.1e-29 131.3 117 64.1
Duzib106G1045 Durio zibethinus HOM05D005062 ORTHO05D006410 6.6e-29 131.0 116 66.4
MD02G1255900 Malus domestica HOM05D005062 ORTHO05D006410 6.6e-29 131.0 115 66.1
Gorai.008G099000 Gossypium raimondii HOM05D005062 ORTHO05D006410 8.6e-29 130.6 116 65.5
Cfa010314 Carpinus fangiana HOM05D005062 ORTHO05D006410 2.5e-28 129.0 113 64.6
Gohir.A12G092722 Gossypium hirsutum HOM05D005062 ORTHO05D006410 5.6e-28 127.9 116 63.8
Eucgr.J00992 Eucalyptus grandis HOM05D005062 ORTHO05D006410 7.3e-28 127.5 111 65.8
Manes.10G058650 Manihot esculenta HOM05D005062 ORTHO05D006410 1.2e-27 126.7 96 69.8
TAR623G1543 Trochodendron aralioides HOM05D005062 ORTHO05D006410 1.2e-27 126.7 104 68.3
CiPaw.13G040200 Carya illinoinensis HOM05D005062 ORTHO05D006410 1.6e-27 126.3 113 64.6
Ciclev10033893m.g Citrus clementina HOM05D005062 ORTHO05D006410 2.1e-27 125.9 101 70.3
Migut.F01613 Erythranthe guttata HOM05D005062 ORTHO05D006410 2.8e-27 125.6 107 68.2
FAN06G1220 Fragaria x ananassa HOM05D005062 ORTHO05D006410 2.8e-27 125.6 90 81.1
Nn2g14130 Nelumbo nucifera HOM05D005062 ORTHO05D006410 2.8e-27 125.6 108 63.9
Cpa.g.sc183.10 Carica papaya HOM05D005062 ORTHO05D006410 4.7e-27 124.8 112 63.4
Actinidia18593 Actinidia chinensis HOM05D000444 ORTHO05D000489 1.4e-26 123.2 116 60.3
Oeu026579.1 Olea europaea HOM05D005062 ORTHO05D006410 1.4e-26 123.2 108 62.0
CSS0021342 Camellia sinensis var. sinensis HOM05D005062 ORTHO05D006410 1.8e-26 122.9 110 62.7
CSS0050380 Camellia sinensis var. sinensis HOM05D005062 ORTHO05D006410 1.8e-26 122.9 110 62.7
Dinv11848 Davidia involucrata HOM05D005062 ORTHO05D006410 1.8e-26 122.9 116 62.1
Rhsim03G0099700 Rhododendron simsii HOM05D005062 ORTHO05D006410 3.1e-26 122.1 116 61.2
DCAR_006341 Daucus carota HOM05D005062 ORTHO05D006410 4.0e-26 121.7 101 65.3
HanXRQChr08g0217771 Helianthus annuus HOM05D005062 ORTHO05D006410 5.2e-26 121.3 99 64.6
Solyc07g014740.3 Solanum lycopersicum HOM05D005062 ORTHO05D006410 6.8e-26 120.9 97 67.0
Potri.008G021600 Populus trichocarpa HOM05D005062 ORTHO05D006410 1.2e-25 120.2 113 61.9
CAN.G54.5 Capsicum annuum HOM05D005062 ORTHO05D006410 2.6e-25 119.0 97 66.0
GSVIVG01011284001 Vitis vinifera HOM05D005062 ORTHO05D006410 2.6e-25 119.0 113 60.2
CsaV3_2G034960 Cucumis sativus L. HOM05D005062 ORTHO05D006410 3.4e-25 118.6 116 59.5
Sabra08G0014600 Salix brachista HOM05D005062 ORTHO05D006410 3.4e-25 118.6 113 61.1
SGA_v2.0_scaffold13G06459 Striga asiatica HOM05D005062 ORTHO05D006410 3.4e-25 118.6 98 67.3
ATR0081G026 Amborella trichopoda HOM05D005062 ORTHO05D006410 5.8e-25 117.9 91 70.3
Lalb_Chr19g0129181 Lupinus albus HOM05D005062 ORTHO05D006410 5.8e-25 117.9 116 58.6
Medtr1g050462 Medicago truncatula HOM05D005062 ORTHO05D006410 5.8e-25 117.9 92 67.4
TPR.G10638 Trifolium pratense HOM05D005062 ORTHO05D006410 7.6e-25 117.5 116 57.8
THA.LOC104824209 Tarenaya hassleriana HOM05D005062 ORTHO05D006410 2.2e-24 115.9 117 55.6
Ca_12731_v3 Cicer arietinum L. HOM05D005062 ORTHO05D006410 2.9e-24 115.5 116 57.8
Psat6g129720 Pisum sativum HOM05D005062 ORTHO05D006410 3.8e-24 115.2 92 67.4
Peaxi162Scf00235g10011 Petunia axillaris HOM05D005062 ORTHO05D006410 4.9e-24 114.8 107 61.7
Nitab4.5_0010225g0010 Nicotiana tabacum HOM05D005062 ORTHO05D006410 6.4e-24 114.4 102 65.7
Aqoxy2G01214 Aquilegia oxysepala HOM05D005062 ORTHO05D006410 8.4e-24 114.0 116 59.5
SalBow6G6867 Salvia bowleyana HOM05D005062 ORTHO05D006410 8.4e-24 114.0 116 57.8
arahy.Tifrunner.gnm1.ann1.ZAGE2X Arachis hypogaea HOM05D005062 ORTHO05D006410 1.1e-23 113.6 92 67.4
Cc02_g09770 Coffea canephora HOM05D005062 ORTHO05D006410 1.1e-23 113.6 107 58.9
CDE06G2329 Ceratophyllum demersum HOM05D005062 ORTHO05D006410 1.9e-23 112.8 117 55.6
Haze_02484 Corylus avellana HOM05D005062 ORTHO05D006410 2.4e-23 112.5 113 58.4
Duzib128G0173 Durio zibethinus HOM05D005062 ORTHO05D006410 4.2e-23 111.7 125 56.8
Lsat_1_v5_gn_8_23960 Lactuca sativa HOM05D005062 ORTHO05D006410 4.2e-23 111.7 98 60.2
arahy.Tifrunner.gnm1.ann1.BZ57JC Arachis hypogaea HOM05D005062 ORTHO05D006410 5.4e-23 111.3 87 70.1
ECA238G3155 Erigeron canadensis HOM05D005062 ORTHO05D006410 5.4e-23 111.3 111 53.2
Lsat_1_v5_gn_2_104621 Lactuca sativa HOM05D005062 ORTHO05D006410 7.1e-23 110.9 99 56.6
CARHR166310 Cardamine hirsuta HOM05D005062 ORTHO05D006410 1.2e-22 110.2 98 63.3
Cfa010034 Carpinus fangiana HOM05D005062 ORTHO05D006410 1.2e-22 110.2 93 61.3
HanXRQChr11g0342201 Helianthus annuus HOM05D005062 ORTHO05D006410 1.2e-22 110.2 108 53.7
Sp5g06340 Schrenkiella parvula HOM05D005062 ORTHO05D006410 1.2e-22 110.2 101 63.4
AL5G37480 Arabidopsis lyrata HOM05D005062 ORTHO05D006410 2.1e-22 109.4 92 65.2
Lj5g0026270 Lotus japonicus HOM05D005062 ORTHO05D006410 2.7e-22 109.0 103 60.2
AT3G56160 Arabidopsis thaliana HOM05D005062 ORTHO05D006410 4.6e-22 108.2 92 64.1
QL01p012456 Quercus lobata HOM05D005062 ORTHO05D006410 4.6e-22 108.2 108 56.5
GSVIVG01036146001 Vitis vinifera HOM05D005062 ORTHO05D006410 4.6e-22 108.2 116 56.0
Haze_23392 Corylus avellana HOM05D005062 ORTHO05D006410 6.0e-22 107.8 92 60.9
HanXRQChr08g0217571 Helianthus annuus HOM05D005062 ORTHO05D006410 6.0e-22 107.8 110 54.5
ECA233G2289 Erigeron canadensis HOM05D005062 ORTHO05D006410 7.8e-22 107.5 98 62.2
Phvul.007G247700 Phaseolus vulgaris HOM05D005062 ORTHO05D006410 7.8e-22 107.5 116 56.0
EL10As25g24233 Beta vulgaris HOM05D005062 ORTHO05D006410 1.3e-21 106.7 108 57.4
MSTRG.8110 Avicennia marina HOM05D005062 ORTHO05D006410 1.7e-21 106.3 108 56.5
AUR62034504 Chenopodium quinoa HOM05D005062 ORTHO05D006410 2.3e-21 105.9 93 61.3
Glyma.10G111800 Glycine max HOM05D005062 ORTHO05D006410 2.3e-21 105.9 116 55.2
CiPaw.14G101300 Carya illinoinensis HOM05D005062 ORTHO05D006410 3.9e-21 105.1 94 59.6
Os02g0531200 Oryza sativa ssp. japonica HOM05D005062 ORTHO05D006410 1.1e-20 103.6 99 58.6
HPP92_007815 Vanilla planifolia HOM05D005062 ORTHO05D006410 1.5e-20 103.2 100 55.0
BraA09t40366Z Brassica rapa HOM05D005062 ORTHO05D006410 1.9e-20 102.8 102 59.8
A09p49130 Brassica napus HOM05D002435 ORTHO05D002550 2.5e-20 102.4 98 61.2
BcaB01g00026 Brassica carinata HOM05D002435 ORTHO05D002550 3.3e-20 102.1 97 61.9
BcaC07g39930 Brassica carinata HOM05D002435 ORTHO05D002550 3.3e-20 102.1 99 60.6
C08p31440 Brassica napus HOM05D002435 ORTHO05D002550 3.3e-20 102.1 99 60.6
BolC8t50765H Brassica oleracea HOM05D002435 ORTHO05D002550 3.3e-20 102.1 99 60.6
VMungo0720G3089 Vigna mungo HOM05D000444 ORTHO05D000489 1.6e-19 99.8 80 67.5
Hund06778 Selenicereus undatus HOM05D005062 ORTHO05D006410 2.8e-19 99.0 87 64.4
Eucgr.B03869 Eucalyptus grandis HOM05D005062 ORTHO05D006410 5.3e-18 94.7 108 49.1
Ah.09g232820 Amaranthus hybridus HOM05D005062 ORTHO05D006410 1.5e-17 93.2 80 62.5
PGR102G2753 Punica granatum HOM05D005062 ORTHO05D006410 1.5e-17 93.2 110 52.7
Ah.08g215800 Amaranthus hybridus HOM05D005062 ORTHO05D006410 2.0e-17 92.8 108 51.9
FAN01G2288 Fragaria x ananassa HOM05D005062 ORTHO05D006410 9.9e-17 90.5 52 92.3
EL10Ac7g15813 Beta vulgaris HOM05D005062 ORTHO05D006410 1.3e-16 90.1 108 50.0
Thhalv10006005m.g Eutrema salsugineum HOM05D005062 ORTHO05D006410 2.9e-16 89.0 75 68.0
CiPaw.14G101100 Carya illinoinensis HOM05D005062 ORTHO05D006410 2.4e-15 85.9 113 46.9
AUR62009772 Chenopodium quinoa HOM05D005062 ORTHO05D006410 4.2e-15 85.1 108 48.1
AUR62039218 Chenopodium quinoa HOM05D005062 ORTHO05D006410 4.2e-15 85.1 108 47.2
A02p12720 Brassica napus HOM05D005062 ORTHO05D006410 5.4e-15 84.7 69 72.5
CBR_g48207 Chara braunii HOM05D000019 ORTHO05D000048 3.5e-14 82.0 119 46.2
Sc12g0004460 Simmondsia chinensis HOM05D005062 ORTHO05D006410 1.6e-11 73.2 79 54.4
Sopen07g005620 Solanum pennellii HOM05D000002 ORTHO05D000001 1.6e-11 73.2 49 77.6
unitig_578.g16343 Utricularia gibba HOM05D005062 ORTHO05D006410 3.6e-11 72.0 91 47.3
MELO3C034937.2 Cucumis melo HOM05D005062 ORTHO05D006410 2.9e-08 62.4 66 59.1
Mapoly0046s0115 Marchantia polymorpha HOM05D005062 ORTHO05D006410 7.1e-07 57.8 92 35.9
FAN19G1644 Fragaria x ananassa HOM05D004979 ORTHO05D006190 1.2e-06 57.0 42 71.4
CDE08G0076 Ceratophyllum demersum HOM05D005062 ORTHO05D006410 3.5e-06 55.5 31 90.3
Ca_12794_v3 Cicer arietinum L. HOM05D005062 ORTHO05D006410 3.5e-06 55.5 52 59.6


User provided reference genes

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