Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FvH4_7g03520 Fragaria vesca HOM05D002974 ORTHO05D002992 4.8e-70 267.7 133 100.0
FAN06G3677 Fragaria x ananassa HOM05D002974 ORTHO05D002992 4.8e-70 267.7 133 100.0
FAN01G3097 Fragaria x ananassa HOM05D002974 ORTHO05D002992 2.2e-62 242.3 134 93.3
FAN10G2850 Fragaria x ananassa HOM05D002974 ORTHO05D002992 3.7e-62 241.5 133 92.5
FAN03G0828 Fragaria x ananassa HOM05D002974 ORTHO05D002992 1.5e-60 236.1 134 91.8
RcHm_v2.0_Chr1g0325821 Rosa chinensis HOM05D002974 ORTHO05D002992 2.7e-57 225.3 133 85.7
Prupe.2G041200 Prunus persica HOM05D002974 ORTHO05D002992 2.5e-34 149.1 137 64.2
QL04p017813 Quercus lobata HOM05D002974 ORTHO05D002992 1.0e-19 100.5 128 49.2
QL04p018674 Quercus lobata HOM05D002974 ORTHO05D002992 1.0e-19 100.5 128 49.2
Manes.11G007000 Manihot esculenta HOM05D002974 ORTHO05D002992 7.2e-18 94.4 63 77.8
CiPaw.14G008700 Carya illinoinensis HOM05D002974 ORTHO05D002992 2.1e-17 92.8 140 46.4
Potri.001G029700 Populus trichocarpa HOM05D002974 ORTHO05D002992 2.1e-17 92.8 78 65.4
Potri.003G194700 Populus trichocarpa HOM05D002974 ORTHO05D002992 2.1e-17 92.8 79 64.6
CiPaw.13G015100 Carya illinoinensis HOM05D002974 ORTHO05D002992 6.1e-17 91.3 130 46.9
Sabra03G0145400 Salix brachista HOM05D002974 ORTHO05D002992 8.9e-16 87.4 63 69.8
Manes.04G157400 Manihot esculenta HOM05D002974 ORTHO05D002992 1.5e-15 86.7 64 70.3
QL04p017793 Quercus lobata HOM05D002974 ORTHO05D002992 1.3e-14 83.6 121 43.8
PGR031G0048 Punica granatum HOM05D002974 ORTHO05D002992 3.7e-14 82.0 97 48.5
Thecc.10G149600 Theobroma cacao HOM05D002974 ORTHO05D002992 1.1e-13 80.5 150 41.3
Cfa010941 Carpinus fangiana HOM05D002974 ORTHO05D002992 2.4e-13 79.3 75 58.7
Eucgr.G03218 Eucalyptus grandis HOM05D002974 ORTHO05D002992 1.2e-12 77.0 139 41.7
Oeu064130.1 Olea europaea HOM05D002974 ORTHO05D002992 2.0e-12 76.3 67 59.7
Dinv32015 Davidia involucrata HOM05D002974 ORTHO05D002992 2.7e-12 75.9 124 44.4
PGSC0003DMG400005401 Solanum tuberosum HOM05D002974 ORTHO05D002992 2.7e-12 75.9 59 69.5
CsaV3_5G036860 Cucumis sativus L. HOM05D002974 ORTHO05D002992 5.9e-12 74.7 79 58.2
TWI15G0153 Tripterygium wilfordii HOM05D002974 ORTHO05D002992 7.8e-12 74.3 67 61.2
CANSAT56G2792 Cannabis sativa HOM05D002974 ORTHO05D002992 2.3e-11 72.8 58 65.5
MELO3C012484.2 Cucumis melo HOM05D002974 ORTHO05D002992 2.9e-11 72.4 85 54.1
Rhsim07G0068200 Rhododendron simsii HOM05D002974 ORTHO05D002992 2.9e-11 72.4 64 64.1
COL.COLO4_20695 Corchorus olitorius HOM05D003550 ORTHO05D004336 3.9e-11 72.0 67 64.2
Duzib114G0524 Durio zibethinus HOM05D002974 ORTHO05D002992 3.9e-11 72.0 63 66.7
Nn2g14777 Nelumbo nucifera HOM05D002974 ORTHO05D002992 5.0e-11 71.6 133 43.6
Gohir.A05G399600 Gossypium hirsutum HOM05D002974 ORTHO05D002992 6.6e-11 71.2 133 42.9
Gohir.D04G016200 Gossypium hirsutum HOM05D002974 ORTHO05D002992 6.6e-11 71.2 133 42.1
Gorai.012G018900 Gossypium raimondii HOM05D002974 ORTHO05D002992 6.6e-11 71.2 141 41.1
Ciclev10002803m.g Citrus clementina HOM05D002974 ORTHO05D002992 8.6e-11 70.9 71 59.2
Nitab4.5_0005808g0010 Nicotiana tabacum HOM05D002974 ORTHO05D002992 8.6e-11 70.9 158 36.1
Psat5g220360 Pisum sativum HOM05D002974 ORTHO05D002992 8.6e-11 70.9 136 41.2
Ca_12961_v3 Cicer arietinum L. HOM05D002974 ORTHO05D002992 1.5e-10 70.1 69 60.9
Duzib106G1811 Durio zibethinus HOM05D002974 ORTHO05D002992 1.5e-10 70.1 120 45.0
Solyc01g096510.2 Solanum lycopersicum HOM05D002974 ORTHO05D002992 1.5e-10 70.1 59 64.4
CAN.G134.10 Capsicum annuum HOM05D002974 ORTHO05D002992 1.9e-10 69.7 131 39.7
ClCG05G026910 Citrullus lanatus HOM05D002974 ORTHO05D002992 1.9e-10 69.7 67 61.2
Dinv44699 Davidia involucrata HOM05D002974 ORTHO05D002992 1.9e-10 69.7 114 45.6
Sed0006618 Sechium edule HOM05D002974 ORTHO05D002992 1.9e-10 69.7 60 65.0
Lj3g0008937 Lotus japonicus HOM05D002974 ORTHO05D002992 4.3e-10 68.6 67 59.7
Medtr3g013980 Medicago truncatula HOM05D002974 ORTHO05D002992 4.3e-10 68.6 146 38.4
Nitab4.5_0003481g0110 Nicotiana tabacum HOM05D002974 ORTHO05D002992 4.3e-10 68.6 144 38.9
Oeu006786.1 Olea europaea HOM05D002974 ORTHO05D002992 5.6e-10 68.2 58 63.8
AUR62032633 Chenopodium quinoa HOM05D012416 ORTHO05D002992 9.5e-10 67.4 65 58.5
Gohir.A10G187100 Gossypium hirsutum HOM05D002974 ORTHO05D002992 9.5e-10 67.4 56 67.9
TPR.G31150 Trifolium pratense HOM05D002974 ORTHO05D002992 9.5e-10 67.4 70 58.6
TAR623G1017 Trochodendron aralioides HOM05D002974 ORTHO05D002992 9.5e-10 67.4 112 43.8
Sopen01g040240 Solanum pennellii HOM05D002974 ORTHO05D002992 2.1e-09 66.2 153 35.9
Cfa020005 Carpinus fangiana HOM05D002974 ORTHO05D002992 2.8e-09 65.9 118 38.1
AUR62026884 Chenopodium quinoa HOM05D012416 ORTHO05D002992 2.8e-09 65.9 66 54.5
AUR62044059 Chenopodium quinoa HOM05D012416 ORTHO05D006373 2.8e-09 65.9 66 54.5
Gohir.D10G194600 Gossypium hirsutum HOM05D002974 ORTHO05D002992 2.8e-09 65.9 56 66.1
Gorai.011G217100 Gossypium raimondii HOM05D002974 ORTHO05D002992 2.8e-09 65.9 56 66.1
Sc11g0006360 Simmondsia chinensis HOM05D002974 ORTHO05D002992 2.8e-09 65.9 77 51.9
MSTRG.28034 Avicennia marina HOM05D002974 ORTHO05D002992 3.6e-09 65.5 140 34.3
Sed0000723 Sechium edule HOM05D002974 ORTHO05D002992 4.7e-09 65.1 50 74.0
Atru.chr12.1277 Acer truncatum HOM05D002974 ORTHO05D002992 6.1e-09 64.7 104 44.2
Oeu053079.1 Olea europaea HOM05D002974 ORTHO05D002992 6.1e-09 64.7 55 65.5
MSTRG.5073 Avicennia marina HOM05D002974 ORTHO05D002992 8.0e-09 64.3 54 57.4
AUR62031748 Chenopodium quinoa HOM05D012416 ORTHO05D006373 1.0e-08 63.9 107 42.1
Migut.N01854 Erythranthe guttata HOM05D002974 ORTHO05D002992 1.0e-08 63.9 52 59.6
Lalb_Chr24g0400351 Lupinus albus HOM05D002974 ORTHO05D002992 1.4e-08 63.5 63 54.0
Dinv06180 Davidia involucrata HOM05D002974 ORTHO05D002992 1.8e-08 63.2 101 43.6
Nn7g36749 Nelumbo nucifera HOM05D002974 ORTHO05D002992 1.8e-08 63.2 66 56.1
Thecc.05G134100 Theobroma cacao HOM05D002974 ORTHO05D002992 1.8e-08 63.2 136 36.8
EL10Ac2g02772 Beta vulgaris HOM05D012416 ORTHO05D002992 3.1e-08 62.4 58 55.2
Glyma.04G134200 Glycine max HOM05D002974 ORTHO05D002992 4.0e-08 62.0 88 47.7
Prupe.7G038200 Prunus persica HOM05D002974 ORTHO05D002992 4.0e-08 62.0 65 55.4
THA.LOC104820144 Tarenaya hassleriana HOM05D002974 ORTHO05D002992 4.0e-08 62.0 105 45.7
THA.LOC109116532 Tarenaya hassleriana HOM05D002974 ORTHO05D002992 5.2e-08 61.6 82 45.1
Oeu011571.1 Olea europaea HOM05D002974 ORTHO05D002992 6.8e-08 61.2 58 56.9
Peaxi162Scf00082g00006 Petunia axillaris HOM05D002974 ORTHO05D002992 6.8e-08 61.2 57 63.2
unitig_26.g9507 Utricularia gibba HOM05D002974 ORTHO05D002992 6.8e-08 61.2 61 55.7
CSS0001226 Camellia sinensis var. sinensis HOM05D002974 ORTHO05D002992 8.9e-08 60.8 126 34.9
Haze_20227 Corylus avellana HOM05D002974 ORTHO05D002992 8.9e-08 60.8 68 50.0
SalBow5G5227 Salvia bowleyana HOM05D002974 ORTHO05D002992 8.9e-08 60.8 46 60.9
Migut.B01240 Erythranthe guttata HOM05D002974 ORTHO05D002992 1.2e-07 60.5 106 37.7
CSS0032574 Camellia sinensis var. sinensis HOM05D002974 ORTHO05D002992 1.5e-07 60.1 126 34.9
SGA_v2.0_scaffold43G16289 Striga asiatica HOM05D002974 ORTHO05D002992 1.5e-07 60.1 83 41.0
TWI53G1119 Tripterygium wilfordii HOM05D002974 ORTHO05D002992 1.5e-07 60.1 55 56.4
BcaB01g03488 Brassica carinata HOM05D002974 ORTHO05D002992 2.0e-07 59.7 131 34.4
Phvul.005G024800 Phaseolus vulgaris HOM05D002974 ORTHO05D002992 2.0e-07 59.7 67 59.7
TAR633G1036 Trochodendron aralioides HOM05D002974 ORTHO05D002992 2.0e-07 59.7 53 62.3
ECA234G2872 Erigeron canadensis HOM05D002974 ORTHO05D002992 2.6e-07 59.3 60 58.3
Ah.10g030130 Amaranthus hybridus HOM05D002974 ORTHO05D002992 3.4e-07 58.9 53 56.6
ATR1096G079 Amborella trichopoda HOM05D002974 ORTHO05D002992 3.4e-07 58.9 52 61.5
VMungo1080G0254 Vigna mungo HOM05D002974 ORTHO05D002992 3.4e-07 58.9 66 57.6
Aqoxy2G00396 Aquilegia oxysepala HOM05D002974 ORTHO05D002992 4.4e-07 58.5 57 63.2
Eucgr.A02242 Eucalyptus grandis HOM05D002974 ORTHO05D002992 4.4e-07 58.5 66 51.5
Sed0014788 Sechium edule HOM05D002974 ORTHO05D002992 4.4e-07 58.5 52 61.5
Duzib106G0159 Durio zibethinus HOM05D002974 ORTHO05D002992 5.8e-07 58.2 111 37.8
AL5G38080 Arabidopsis lyrata HOM05D002974 ORTHO05D002992 7.5e-07 57.8 49 63.3
CSS0033077 Camellia sinensis var. sinensis HOM05D002974 ORTHO05D002992 7.5e-07 57.8 121 39.7
Gohir.D11G322600 Gossypium hirsutum HOM05D002974 ORTHO05D002992 7.5e-07 57.8 45 62.2
Gorai.007G352700 Gossypium raimondii HOM05D002974 ORTHO05D002992 7.5e-07 57.8 45 62.2
Lj3g0024515 Lotus japonicus HOM05D002974 ORTHO05D002992 7.5e-07 57.8 123 38.2
CiPaw.10G040200 Carya illinoinensis HOM05D002974 ORTHO05D002992 9.8e-07 57.4 87 43.7
DCAR_013643 Daucus carota HOM05D002974 ORTHO05D002992 9.8e-07 57.4 34 85.3
MD14G1088500 Malus domestica HOM05D002974 ORTHO05D002992 9.8e-07 57.4 49 67.3
SGA_v2.0_scaffold232G43495 Striga asiatica HOM05D002974 ORTHO05D002992 9.8e-07 57.4 58 53.4
Cc06_g19310 Coffea canephora HOM05D002974 ORTHO05D002992 1.3e-06 57.0 102 41.2
Glyma.15G232200 Glycine max HOM05D002974 ORTHO05D002992 1.3e-06 57.0 126 37.3
Actinidia01827 Actinidia chinensis HOM05D002974 ORTHO05D002992 1.7e-06 56.6 122 36.1
ClCG04G004500 Citrullus lanatus HOM05D002974 ORTHO05D002992 1.7e-06 56.6 50 60.0
Gohir.A11G307100 Gossypium hirsutum HOM05D002974 ORTHO05D002992 1.7e-06 56.6 45 60.0
Medtr8g040080 Medicago truncatula HOM05D002974 ORTHO05D002992 1.7e-06 56.6 127 37.0
PSO384G2085 Papaver somniferum HOM05D002974 ORTHO05D002992 1.7e-06 56.6 77 49.4
PGSC0003DMG400008372 Solanum tuberosum HOM05D015198 ORTHO05D002992 1.7e-06 56.6 124 33.1
Carub.0005s2345 Capsella rubella HOM05D002974 ORTHO05D002992 2.2e-06 56.2 44 61.4
CiPaw.09G047800 Carya illinoinensis HOM05D002974 ORTHO05D002992 2.2e-06 56.2 51 52.9
CDE09G1110 Ceratophyllum demersum HOM05D002974 ORTHO05D002992 2.2e-06 56.2 55 54.5
DCAR_025326 Daucus carota HOM05D002974 ORTHO05D002992 2.2e-06 56.2 90 43.3
Lalb_Chr19g0133001 Lupinus albus HOM05D002974 ORTHO05D002992 2.2e-06 56.2 67 55.2
Lalb_Chr21g0315251 Lupinus albus HOM05D002974 ORTHO05D002992 2.2e-06 56.2 130 37.7
Zm00001eb015160 Zea mays HOM05D002974 ORTHO05D002992 2.2e-06 56.2 48 62.5
AT3G56710 Arabidopsis thaliana HOM05D002974 ORTHO05D002992 3.7e-06 55.5 90 43.3
MELO3C019076.2 Cucumis melo HOM05D002974 ORTHO05D002992 3.7e-06 55.5 52 63.5
Glyma.03G127800 Glycine max HOM05D002974 ORTHO05D002992 3.7e-06 55.5 55 52.7
Oeu059346.1 Olea europaea HOM05D002974 ORTHO05D002992 3.7e-06 55.5 66 48.5
Glyma.19G130400 Glycine max HOM05D002974 ORTHO05D002992 4.9e-06 55.1 54 59.3
Manes.09G004900 Manihot esculenta HOM05D002974 ORTHO05D002992 4.9e-06 55.1 129 34.1
PSO339G5722 Papaver somniferum HOM05D002974 ORTHO05D002992 4.9e-06 55.1 43 69.8
Potri.006G038900 Populus trichocarpa HOM05D002974 ORTHO05D002992 4.9e-06 55.1 48 60.4
Sc10g0004500 Simmondsia chinensis HOM05D002974 ORTHO05D002992 4.9e-06 55.1 54 57.4
TPR.G8953 Trifolium pratense HOM05D002974 ORTHO05D002992 4.9e-06 55.1 54 55.6
HPP92_028460 Vanilla planifolia HOM05D002974 ORTHO05D002992 4.9e-06 55.1 49 57.1
VMungo1383G0235 Vigna mungo HOM05D002974 ORTHO05D002992 4.9e-06 55.1 58 51.7
Atru.chr1.1439 Acer truncatum HOM05D002974 ORTHO05D002992 6.4e-06 54.7 120 37.5
BcaB02g08351 Brassica carinata HOM05D002974 ORTHO05D002992 6.4e-06 54.7 49 59.2
C06p23750 Brassica napus HOM05D002974 ORTHO05D002992 6.4e-06 54.7 133 35.3
BraA04t16085Z Brassica rapa HOM05D002974 ORTHO05D002992 6.4e-06 54.7 49 59.2
Cpa.g.sc5.168 Carica papaya HOM05D002974 ORTHO05D002992 6.4e-06 54.7 49 57.1
CDE08G1203 Ceratophyllum demersum HOM05D002974 ORTHO05D002992 6.4e-06 54.7 63 49.2
CsaV3_4G029660 Cucumis sativus L. HOM05D002974 ORTHO05D002992 6.4e-06 54.7 52 63.5
Duzib128G1163 Durio zibethinus HOM05D002974 ORTHO05D002992 6.4e-06 54.7 72 48.6
Glyma.13G193800 Glycine max HOM05D002974 ORTHO05D002992 6.4e-06 54.7 127 41.7
Lj1g0016303 Lotus japonicus HOM05D002974 ORTHO05D002992 6.4e-06 54.7 57 52.6
Nitab4.5_0004588g0030 Nicotiana tabacum HOM05D015198 ORTHO05D002992 6.4e-06 54.7 94 35.1
QL07p010402 Quercus lobata HOM05D002974 ORTHO05D002992 6.4e-06 54.7 56 53.6
CANSAT64G2862 Cannabis sativa HOM05D002974 ORTHO05D002992 8.3e-06 54.3 50 58.0
FAN09G2803 Fragaria x ananassa HOM05D002974 ORTHO05D002992 8.3e-06 54.3 58 56.9
Zm00001eb395660 Zea mays HOM05D002974 ORTHO05D002992 8.3e-06 54.3 34 76.5


User provided reference genes

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