Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FvH4_7g08830 Fragaria vesca HOM05D005488 ORTHO05D006568 1.9e-69 265.8 136 100.0
FAN06G3564 Fragaria x ananassa HOM05D005488 ORTHO05D006568 1.9e-69 265.8 136 100.0
FAN10G0732 Fragaria x ananassa HOM05D005488 ORTHO05D006568 1.0e-67 260.0 136 97.1
FAN01G0908 Fragaria x ananassa HOM05D005488 ORTHO05D006568 1.3e-67 259.6 136 97.1
FAN10G4236 Fragaria x ananassa HOM05D005488 ORTHO05D006568 2.3e-67 258.8 136 97.1
FAN03G1834 Fragaria x ananassa HOM05D005488 ORTHO05D006568 3.0e-67 258.5 136 97.1
RcHm_v2.0_Chr1g0344251 Rosa chinensis HOM05D005488 ORTHO05D006568 4.7e-65 251.1 136 93.4
Prupe.2G116500 Prunus persica HOM05D005488 ORTHO05D006568 4.4e-63 244.6 136 87.5
MD07G1091300 Malus domestica HOM05D005488 ORTHO05D006568 8.7e-59 230.3 137 84.7
MD02G1223400 Malus domestica HOM05D005488 ORTHO05D006568 3.6e-57 224.9 137 84.7
Cfa011024 Carpinus fangiana HOM05D005488 ORTHO05D006568 9.9e-55 216.9 136 80.9
CANSAT25G0013 Cannabis sativa HOM05D005488 ORTHO05D006568 1.3e-54 216.5 138 79.0
CiPaw.14G016900 Carya illinoinensis HOM05D005488 ORTHO05D006568 4.9e-54 214.5 136 77.9
Haze_02901 Corylus avellana HOM05D005488 ORTHO05D006568 1.4e-53 213.0 133 80.5
CiPaw.13G022100 Carya illinoinensis HOM05D005488 ORTHO05D006568 2.4e-53 212.2 136 80.9
Manes.05G058400 Manihot esculenta HOM05D005488 ORTHO05D006568 2.7e-52 208.8 136 77.9
GSVIVG01018352001 Vitis vinifera HOM05D005488 ORTHO05D006568 2.7e-52 208.8 137 78.1
AUR62013788 Chenopodium quinoa HOM05D005488 ORTHO05D006568 3.0e-51 205.3 138 76.1
Solyc01g088610.4 Solanum lycopersicum HOM05D005488 ORTHO05D006568 5.1e-51 204.5 137 78.1
PGSC0003DMG400001718 Solanum tuberosum HOM05D005488 ORTHO05D006568 5.1e-51 204.5 137 78.1
Oeu012019.1 Olea europaea HOM05D002442 ORTHO05D006568 8.7e-51 203.8 137 77.4
Sopen01g035460 Solanum pennellii HOM05D005488 ORTHO05D006568 8.7e-51 203.8 137 77.4
Potri.014G044300 Populus trichocarpa HOM05D005488 ORTHO05D006568 1.9e-50 202.6 139 75.5
Nn6g33696 Nelumbo nucifera HOM05D005488 ORTHO05D006568 5.6e-50 201.1 137 75.2
Sc26g0001760 Simmondsia chinensis HOM05D005488 ORTHO05D006568 5.6e-50 201.1 138 77.5
CAN.G756.18 Capsicum annuum HOM05D005488 ORTHO05D006568 9.6e-50 200.3 137 75.9
AUR62023368 Chenopodium quinoa HOM05D005488 ORTHO05D006568 1.6e-49 199.5 138 73.9
Nitab4.5_0004088g0020 Nicotiana tabacum HOM05D005488 ORTHO05D006568 1.6e-49 199.5 137 75.2
Nitab4.5_0005064g0040 Nicotiana tabacum HOM05D005488 ORTHO05D006568 1.6e-49 199.5 137 75.2
Atru.chr5.44 Acer truncatum HOM05D005488 ORTHO05D006568 3.6e-49 198.4 138 74.6
Oeu034855.1 Olea europaea HOM05D005488 ORTHO05D006568 4.8e-49 198.0 137 76.6
Atru.chr5.75 Acer truncatum HOM05D005488 ORTHO05D006568 6.2e-49 197.6 138 74.6
EL10Ac1g00715 Beta vulgaris HOM05D005488 ORTHO05D006568 1.1e-48 196.8 138 76.8
PGR042G2970 Punica granatum HOM05D005488 ORTHO05D006568 4.0e-48 194.9 137 75.9
Gohir.A08G140700 Gossypium hirsutum HOM05D005488 ORTHO05D006568 5.3e-48 194.5 137 73.7
Lj3g0015162 Lotus japonicus HOM05D005488 ORTHO05D006568 5.3e-48 194.5 140 70.7
Gorai.004G168100 Gossypium raimondii HOM05D005488 ORTHO05D006568 6.9e-48 194.1 137 73.7
Hund17125 Selenicereus undatus HOM05D005488 ORTHO05D006568 6.9e-48 194.1 134 70.1
CSS0036750 Camellia sinensis var. sinensis HOM05D005488 ORTHO05D006568 2.0e-47 192.6 138 73.9
Gohir.D08G161700 Gossypium hirsutum HOM05D005488 ORTHO05D006568 2.0e-47 192.6 137 73.7
Actinidia21613 Actinidia chinensis HOM05D005488 ORTHO05D006568 4.5e-47 191.4 139 73.4
AL5G42420 Arabidopsis lyrata HOM05D005488 ORTHO05D006568 4.5e-47 191.4 139 68.3
DCAR_025027 Daucus carota HOM05D005488 ORTHO05D006568 4.5e-47 191.4 138 71.0
Psat0s4427g0080 Pisum sativum HOM05D005488 ORTHO05D006568 5.8e-47 191.0 136 70.6
TWI23G0236 Tripterygium wilfordii HOM05D005488 ORTHO05D006568 5.8e-47 191.0 138 74.6
Ciclev10022799m.g Citrus clementina HOM05D005488 ORTHO05D006568 1.3e-46 189.9 138 72.5
Cc02_g25610 Coffea canephora HOM05D005488 ORTHO05D006568 1.3e-46 189.9 142 71.8
COL.COLO4_12353 Corchorus olitorius HOM05D005488 ORTHO05D006568 1.3e-46 189.9 137 71.5
Thecc.01G402400 Theobroma cacao HOM05D005488 ORTHO05D006568 1.3e-46 189.9 137 71.5
TWI14G1396 Tripterygium wilfordii HOM05D005488 ORTHO05D006568 1.7e-46 189.5 137 70.1
Medtr8g009280 Medicago truncatula HOM05D005488 ORTHO05D006568 2.9e-46 188.7 137 71.5
Peaxi162Scf00745g00015 Petunia axillaris HOM05D005488 ORTHO05D006568 2.9e-46 188.7 139 71.9
Glyma.03G103600 Glycine max HOM05D005488 ORTHO05D006568 3.8e-46 188.3 137 69.3
arahy.Tifrunner.gnm1.ann1.L23YUH Arachis hypogaea HOM05D005488 ORTHO05D006568 4.9e-46 188.0 138 71.0
Eucgr.D01184 Eucalyptus grandis HOM05D005488 ORTHO05D006568 6.4e-46 187.6 137 72.3
Phvul.010G041700 Phaseolus vulgaris HOM05D005488 ORTHO05D006568 8.4e-46 187.2 137 68.6
Aqoxy3G02564 Aquilegia oxysepala HOM05D005488 ORTHO05D006568 1.1e-45 186.8 137 73.0
Ca_23141_v3 Cicer arietinum L. HOM05D005488 ORTHO05D006568 1.1e-45 186.8 137 67.2
ClCG05G002900 Citrullus lanatus HOM05D005488 ORTHO05D006568 1.1e-45 186.8 139 69.8
MSTRG.17108 Avicennia marina HOM05D005488 ORTHO05D006568 1.4e-45 186.4 137 70.1
Carub.0005s2695 Capsella rubella HOM05D005488 ORTHO05D006568 1.4e-45 186.4 139 68.3
AT3G60210 Arabidopsis thaliana HOM05D005488 ORTHO05D006568 1.9e-45 186.0 140 67.9
arahy.Tifrunner.gnm1.ann1.LT98XL Arachis hypogaea HOM05D005488 ORTHO05D006568 1.9e-45 186.0 138 70.3
HanXRQChr16g0522961 Helianthus annuus HOM05D005488 ORTHO05D006568 1.9e-45 186.0 141 70.2
PSO063G2958 Papaver somniferum HOM05D005488 ORTHO05D006568 1.9e-45 186.0 137 69.3
Aa31LG1G26190 Aethionema arabicum HOM05D005488 ORTHO05D006568 2.4e-45 185.7 139 67.6
MELO3C006268.2 Cucumis melo HOM05D005488 ORTHO05D006568 2.4e-45 185.7 140 69.3
unitig_26.g8858 Utricularia gibba HOM05D005488 ORTHO05D006568 2.4e-45 185.7 136 66.2
Lalb_Chr19g0126481 Lupinus albus HOM05D005488 ORTHO05D006568 3.2e-45 185.3 139 70.5
PSO782G2409 Papaver somniferum HOM05D005488 ORTHO05D006568 3.2e-45 185.3 137 69.3
Lalb_Chr03g0040501 Lupinus albus HOM05D005488 ORTHO05D006568 4.2e-45 184.9 136 70.6
SGA_v2.0_scaffold52G19266 Striga asiatica HOM05D005488 ORTHO05D006568 4.2e-45 184.9 137 71.5
Cpa.g.sc52.71 Carica papaya HOM05D005488 ORTHO05D006568 9.3e-45 183.7 146 69.2
CsaV3_3G010440 Cucumis sativus L. HOM05D005488 ORTHO05D006568 2.1e-44 182.6 140 67.1
Lsat_1_v5_gn_4_38520 Lactuca sativa HOM05D005488 ORTHO05D006568 2.1e-44 182.6 138 68.1
SalBow5G2779 Salvia bowleyana HOM05D005488 ORTHO05D006568 2.7e-44 182.2 137 70.8
THA.LOC104827584 Tarenaya hassleriana HOM05D005488 ORTHO05D006568 3.5e-44 181.8 138 67.4
Duzib138G1174 Durio zibethinus HOM05D005488 ORTHO05D006568 1.0e-43 180.3 137 67.9
CSS0010758 Camellia sinensis var. sinensis HOM05D005488 ORTHO05D006568 1.3e-43 179.9 139 70.5
ECA234G4156 Erigeron canadensis HOM05D005488 ORTHO05D006568 2.3e-43 179.1 140 67.1
AL4G43700 Arabidopsis lyrata HOM05D005488 ORTHO05D006568 5.1e-43 177.9 140 67.1
CDE12G0168 Ceratophyllum demersum HOM05D005488 ORTHO05D006568 8.7e-43 177.2 143 62.9
ClCG06G000860 Citrullus lanatus HOM05D005488 ORTHO05D006568 1.1e-42 176.8 136 69.1
AT2G44650 Arabidopsis thaliana HOM05D005488 ORTHO05D006568 2.5e-42 175.6 141 66.7
CSS0012976 Camellia sinensis var. sinensis HOM05D005488 ORTHO05D006568 2.5e-42 175.6 141 68.8
Migut.N01716 Erythranthe guttata HOM05D005488 ORTHO05D006568 3.3e-42 175.3 137 67.2
Thhalv10001677m.g Eutrema salsugineum HOM05D005488 ORTHO05D006568 3.3e-42 175.3 140 65.7
ATR0665G403 Amborella trichopoda HOM05D005488 ORTHO05D006568 4.3e-42 174.9 106 78.3
Carub.0004s2720 Capsella rubella HOM05D005488 ORTHO05D006568 4.3e-42 174.9 140 67.1
BcaB02g08840 Brassica carinata HOM05D005488 ORTHO05D006568 7.4e-42 174.1 139 66.2
Sp4g26730 Schrenkiella parvula HOM05D005488 ORTHO05D006568 9.6e-42 173.7 140 65.7
VMungo0331G0633 Vigna mungo HOM05D005488 ORTHO05D006568 9.6e-42 173.7 106 76.4
Sed0025787 Sechium edule HOM05D005488 ORTHO05D006568 1.3e-41 173.3 139 64.0
BcaC02g12287 Brassica carinata HOM05D005488 ORTHO05D006568 2.8e-41 172.2 138 65.9
C04p05600 Brassica napus HOM05D005488 ORTHO05D006568 2.8e-41 172.2 138 65.9
BolC4t22190H Brassica oleracea HOM05D005488 ORTHO05D006568 2.8e-41 172.2 138 65.9
BraA05t19455Z Brassica rapa HOM05D005488 ORTHO05D006568 2.8e-41 172.2 138 65.9
Migut.B01488 Erythranthe guttata HOM05D005488 ORTHO05D006568 6.2e-41 171.0 137 67.9
BolC4t28620H Brassica oleracea HOM05D005488 ORTHO05D006568 8.1e-41 170.6 139 65.5
CDE04G3246 Ceratophyllum demersum HOM05D005488 ORTHO05D006568 8.1e-41 170.6 136 64.0
A05p04790 Brassica napus HOM05D005488 ORTHO05D006568 1.4e-40 169.9 138 64.5
Os10g0566700 Oryza sativa ssp. japonica HOM05D005488 ORTHO05D006568 1.8e-40 169.5 104 79.8
BcaC02g07105 Brassica carinata HOM05D005488 ORTHO05D006568 3.1e-40 168.7 139 64.7
Sed0000336 Sechium edule HOM05D005488 ORTHO05D006568 4.0e-40 168.3 136 65.4
BraA04t18803Z Brassica rapa HOM05D005488 ORTHO05D006568 5.3e-40 167.9 139 66.2
Zm00001eb390720 Zea mays HOM05D005488 ORTHO05D006568 9.0e-40 167.2 122 71.3
CARHR139860 Cardamine hirsuta HOM05D005488 ORTHO05D006568 1.2e-39 166.8 140 64.3
TPR.G17350 Trifolium pratense HOM05D005488 ORTHO05D006568 5.8e-39 164.5 107 73.8
MELO3C022455.2 Cucumis melo HOM05D005488 ORTHO05D006568 2.9e-38 162.2 155 60.6
Zm00001eb024030 Zea mays HOM05D005488 ORTHO05D006568 2.9e-38 162.2 107 76.6
BcaB06g29391 Brassica carinata HOM05D005488 ORTHO05D006568 6.4e-38 161.0 131 64.9
CsaV3_6G006710 Cucumis sativus L. HOM05D005488 ORTHO05D001261 6.4e-38 161.0 126 68.3
Sabra02G0105500 Salix brachista HOM05D005488 ORTHO05D006568 7.1e-37 157.5 209 46.9
Dinv44023 Davidia involucrata HOM05D005488 ORTHO05D006568 1.2e-36 156.8 90 85.6
unitig_750.g28406 Utricularia gibba HOM05D005488 ORTHO05D006568 1.2e-36 156.8 137 60.6
Potri.002G135700 Populus trichocarpa HOM05D005488 ORTHO05D006568 2.7e-36 155.6 115 69.6
vmacro21078 Vaccinium macrocarpon HOM05D005488 ORTHO05D006568 6.0e-36 154.5 170 54.1
Rhsim01G0143400 Rhododendron simsii HOM05D005488 ORTHO05D006568 1.1e-34 150.2 116 69.0
A04p33420 Brassica napus HOM05D005488 ORTHO05D006568 3.3e-34 148.7 139 60.4
C04p71170 Brassica napus HOM05D005488 ORTHO05D006568 7.4e-34 147.5 145 58.6
SEGI_24977 Sequoiadendron giganteum HOM05D005488 ORTHO05D006568 4.0e-32 141.7 133 56.4
HPP92_025708 Vanilla planifolia HOM05D005488 ORTHO05D006568 7.6e-31 137.5 89 71.9
SMO244G0054 Selaginella moellendorffii HOM05D005488 ORTHO05D006568 2.2e-30 136.0 89 70.8
AagrBONN_evm.TU.Sc2ySwM_117.3656 Anthoceros agrestis HOM05D005488 ORTHO05D006568 2.9e-30 135.6 112 58.0
MD13G1240800 Malus domestica HOM05D005488 ORTHO05D006568 4.9e-30 134.8 107 69.2
Sabra14G0032200 Salix brachista HOM05D005488 ORTHO05D006568 5.5e-29 131.3 144 52.8
QL04p026246 Quercus lobata HOM05D005488 ORTHO05D006568 2.1e-28 129.4 70 85.7
Duzib133G1397 Durio zibethinus HOM05D005488 ORTHO05D006568 6.0e-28 127.9 108 64.8
Dinv43589 Davidia involucrata HOM05D005488 ORTHO05D006568 3.9e-27 125.2 89 79.8
Mapoly0181s0002 Marchantia polymorpha HOM05D005488 ORTHO05D006568 5.1e-27 124.8 90 67.8
Zm00001eb071630 Zea mays HOM05D005488 ORTHO05D006568 1.9e-26 122.9 73 80.8
Pp3c2_19170 Physcomitrium patens HOM05D005488 ORTHO05D006568 9.7e-26 120.6 89 59.6
Glyma.07G120400 Glycine max HOM05D005488 ORTHO05D006568 1.0e-22 110.5 88 65.9
Pp3c1_20880 Physcomitrium patens HOM05D005488 ORTHO05D006568 1.7e-22 109.8 89 55.1
Gohir.D07G176200 Gossypium hirsutum HOM05D005488 ORTHO05D006568 2.2e-22 109.4 74 71.6
Phvul.006G055900 Phaseolus vulgaris HOM05D005488 ORTHO05D006568 4.3e-18 95.1 87 60.9
Gorai.007G266500 Gossypium raimondii HOM05D005488 ORTHO05D006568 4.8e-17 91.7 65 67.7
QL04p026254 Quercus lobata HOM05D005488 ORTHO05D006568 5.3e-16 88.2 69 69.6
Rhsim03G0098500 Rhododendron simsii HOM05D005488 ORTHO05D006568 3.3e-10 68.9 40 82.5
MD00G1150500 Malus domestica HOM05D005488 ORTHO05D006568 4.4e-10 68.6 36 88.9
AUR62028287 Chenopodium quinoa HOM05D002686 ORTHO05D003222 7.7e-07 57.8 153 32.0
EL10Ac8g19011 Beta vulgaris HOM05D002686 ORTHO05D003222 1.3e-06 57.0 98 32.7
SEGI_38857 Sequoiadendron giganteum HOM05D002686 ORTHO05D003222 1.3e-06 57.0 117 34.2
THA.LOC104810987 Tarenaya hassleriana HOM05D002686 ORTHO05D003222 1.3e-06 57.0 162 32.1
AUR62025283 Chenopodium quinoa HOM05D002686 ORTHO05D003222 1.7e-06 56.6 153 31.4
Os02g0781400 Oryza sativa ssp. japonica HOM05D002686 ORTHO05D003222 2.2e-06 56.2 105 32.4
FAN19G1751 Fragaria x ananassa HOM05D002686 ORTHO05D003222 2.9e-06 55.8 131 33.6
FvH4_1g09160 Fragaria vesca HOM05D002686 ORTHO05D003222 3.8e-06 55.5 133 33.1
FAN23G0852 Fragaria x ananassa HOM05D002686 ORTHO05D003222 3.8e-06 55.5 133 33.1
FAN26G1050 Fragaria x ananassa HOM05D002686 ORTHO05D003222 3.8e-06 55.5 133 33.1
FAN26G3337 Fragaria x ananassa HOM05D002686 ORTHO05D003222 3.8e-06 55.5 133 33.1
FAN28G0604 Fragaria x ananassa HOM05D002686 ORTHO05D003222 3.8e-06 55.5 133 33.1
FAN28G1135 Fragaria x ananassa HOM05D002686 ORTHO05D003222 3.8e-06 55.5 133 33.1
THA.LOC104799611 Tarenaya hassleriana HOM05D002686 ORTHO05D003222 3.8e-06 55.5 161 32.3
Cre16.g673729 Chlamydomonas reinhardtii HOM05D002686 ORTHO05D006568 6.5e-06 54.7 112 39.3
Sabra06G0108500 Salix brachista HOM05D002686 ORTHO05D003222 8.5e-06 54.3 121 33.1


User provided reference genes

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