Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN06G3506 Fragaria x ananassa HOM05D004213 ORTHO05D005091 1.9e-130 469.2 232 100.0
FAN01G2056 Fragaria x ananassa HOM05D004213 ORTHO05D005091 5.1e-128 461.1 232 98.7
FvH4_7g21940 Fragaria vesca HOM05D004213 ORTHO05D005091 1.5e-127 459.5 232 97.8
RcHm_v2.0_Chr3g0490801 Rosa chinensis HOM05D004213 ORTHO05D005091 1.4e-122 443.0 234 94.4
FAN03G2999 Fragaria x ananassa HOM05D004213 ORTHO05D005091 2.5e-122 442.2 247 89.9
FAN10G1826 Fragaria x ananassa HOM05D004213 ORTHO05D005091 5.5e-122 441.0 247 90.3
RcHm_v2.0_Chr3g0492131 Rosa chinensis HOM05D004213 ORTHO05D005091 5.5e-122 441.0 234 94.0
RcHm_v2.0_Chr1g0366261 Rosa chinensis HOM05D004213 ORTHO05D005091 4.7e-121 438.0 234 92.7
Ciclev10021940m.g Citrus clementina HOM05D004213 ORTHO05D005091 2.2e-107 392.5 234 82.1
Atru.chr7.1501 Acer truncatum HOM05D004213 ORTHO05D005091 1.6e-105 386.3 234 81.2
arahy.Tifrunner.gnm1.ann1.HWB48S Arachis hypogaea HOM05D004213 ORTHO05D005091 1.0e-104 383.6 219 82.2
arahy.Tifrunner.gnm1.ann1.LEY1JS Arachis hypogaea HOM05D004213 ORTHO05D005091 1.0e-104 383.6 219 82.2
Eucgr.C02275 Eucalyptus grandis HOM05D004213 ORTHO05D005091 5.2e-104 381.3 232 81.5
TWI09G0095 Tripterygium wilfordii HOM05D004213 ORTHO05D005091 3.4e-103 378.6 234 81.2
Medtr8g028485 Medicago truncatula HOM05D004213 ORTHO05D005091 4.4e-103 378.3 219 82.6
GSVIVG01026970001 Vitis vinifera HOM05D004213 ORTHO05D005091 1.3e-102 376.7 234 78.2
Lalb_Chr10g0096631 Lupinus albus HOM05D004213 ORTHO05D005091 1.7e-102 376.3 219 81.3
VMungo0540G0091 Vigna mungo HOM05D004213 ORTHO05D005091 2.2e-102 375.9 219 80.8
Ca_09511_v3 Cicer arietinum L. HOM05D004213 ORTHO05D005091 2.8e-102 375.6 219 80.8
Ca_30061_v3 Cicer arietinum L. HOM05D004213 ORTHO05D005091 2.8e-102 375.6 219 80.8
Lj3g0016777 Lotus japonicus HOM05D004213 ORTHO05D005091 2.8e-102 375.6 219 81.7
Dinv43865 Davidia involucrata HOM05D004213 ORTHO05D005091 3.7e-102 375.2 234 78.2
Hma1.2p1_0623F.1_g191100 Hydrangea macrophylla HOM05D004213 ORTHO05D005091 3.7e-102 375.2 234 77.8
Medtr8g087440 Medicago truncatula HOM05D004213 ORTHO05D005091 4.8e-102 374.8 219 83.1
vmacro17287 Vaccinium macrocarpon HOM05D004213 ORTHO05D005091 3.1e-101 372.1 234 78.2
MD07G1193700 Malus domestica HOM05D004213 ORTHO05D005091 4.1e-101 371.7 236 82.2
MD07G1194000 Malus domestica HOM05D004213 ORTHO05D005091 4.1e-101 371.7 236 82.2
FAN06G0959 Fragaria x ananassa HOM05D004213 ORTHO05D005091 1.2e-100 370.2 187 98.4
TPR.G28293 Trifolium pratense HOM05D004213 ORTHO05D005091 1.6e-100 369.8 219 80.4
Lalb_Chr17g0338991 Lupinus albus HOM05D004213 ORTHO05D005091 2.0e-100 369.4 219 80.4
Thecc.01G352200 Theobroma cacao HOM05D004213 ORTHO05D005091 3.5e-100 368.6 234 77.8
Rhsim07G0009900 Rhododendron simsii HOM05D004213 ORTHO05D005091 4.5e-100 368.2 234 76.9
COL.COLO4_19238 Corchorus olitorius HOM05D004213 ORTHO05D005091 5.9e-100 367.9 248 75.0
Duzib138G1303 Durio zibethinus HOM05D004213 ORTHO05D005091 1.3e-99 366.7 234 79.1
PGR142G0776 Punica granatum HOM05D004213 ORTHO05D005091 1.3e-99 366.7 235 76.2
Psat4g157720 Pisum sativum HOM05D004213 ORTHO05D005091 1.7e-99 366.3 219 80.4
Psat5g297040 Pisum sativum HOM05D004213 ORTHO05D005091 2.3e-99 365.9 219 79.9
MD10G1064600 Malus domestica HOM05D004213 ORTHO05D005091 2.9e-99 365.5 236 80.5
vmacro09727 Vaccinium macrocarpon HOM05D004213 ORTHO05D005091 3.8e-99 365.2 234 76.1
MBI16_g00685_MAGBIO Magnolia biondii HOM05D004213 ORTHO05D005091 6.5e-99 364.4 219 78.5
Sed0018043 Sechium edule HOM05D004213 ORTHO05D005091 6.5e-99 364.4 219 80.4
TAR374G1598 Trochodendron aralioides HOM05D004213 ORTHO05D005091 6.5e-99 364.4 233 75.1
ClCG09G006700 Citrullus lanatus HOM05D004213 ORTHO05D005091 8.6e-99 364.0 233 77.7
Gohir.D08G149400 Gossypium hirsutum HOM05D004213 ORTHO05D005091 2.5e-98 362.5 219 80.8
Gorai.004G155200 Gossypium raimondii HOM05D004213 ORTHO05D005091 2.5e-98 362.5 219 80.8
PSO063G4449 Papaver somniferum HOM05D004213 ORTHO05D005091 2.5e-98 362.5 230 76.1
Phvul.006G145900 Phaseolus vulgaris HOM05D004213 ORTHO05D005091 2.5e-98 362.5 219 77.2
CANSAT56G1246 Cannabis sativa HOM05D004213 ORTHO05D005091 3.2e-98 362.1 232 75.0
PSO017G5376 Papaver somniferum HOM05D004213 ORTHO05D005091 4.2e-98 361.7 230 76.1
Actinidia20165 Actinidia chinensis HOM05D004213 ORTHO05D005091 5.5e-98 361.3 256 71.9
Nitab4.5_0001141g0050 Nicotiana tabacum HOM05D004213 ORTHO05D005091 9.5e-98 360.5 233 75.1
Ca_03495_v3 Cicer arietinum L. HOM05D004213 ORTHO05D005091 1.2e-97 360.1 219 77.6
TPR.G7188 Trifolium pratense HOM05D004213 ORTHO05D005091 2.1e-97 359.4 219 77.6
Glyma.16G031500 Glycine max HOM05D004213 ORTHO05D005091 3.6e-97 358.6 219 79.0
Hma1.2p1_1013F.1_g247750 Hydrangea macrophylla HOM05D004213 ORTHO05D005091 3.6e-97 358.6 235 74.0
Migut.B01801 Erythranthe guttata HOM05D004213 ORTHO05D005091 1.0e-96 357.1 223 77.1
Gohir.A04G053400 Gossypium hirsutum HOM05D004213 ORTHO05D005091 1.0e-96 357.1 219 78.5
Cfa003870 Carpinus fangiana HOM05D004213 ORTHO05D005091 1.4e-96 356.7 232 73.7
Potri.002G164800 Populus trichocarpa HOM05D004213 ORTHO05D005091 1.4e-96 356.7 235 76.2
HanXRQChr06g0170371 Helianthus annuus HOM05D004213 ORTHO05D005091 2.3e-96 355.9 237 75.1
Sabra02G0146700 Salix brachista HOM05D004213 ORTHO05D005091 3.0e-96 355.5 233 76.4
THA.LOC104827605 Tarenaya hassleriana HOM05D004213 ORTHO05D005091 4.0e-96 355.1 219 75.8
Haze_15567 Corylus avellana HOM05D004213 ORTHO05D005091 1.2e-95 353.6 232 73.7
MELO3C015876.2 Cucumis melo HOM05D004213 ORTHO05D005091 1.5e-95 353.2 219 77.2
vmacro13225 Vaccinium macrocarpon HOM05D004213 ORTHO05D005091 1.5e-95 353.2 233 73.8
Hund26583 Selenicereus undatus HOM05D004213 ORTHO05D005091 9.8e-95 350.5 216 77.8
Nitab4.5_0007641g0010 Nicotiana tabacum HOM05D004213 ORTHO05D005091 1.3e-94 350.1 233 73.4
Oeu010628.1 Olea europaea HOM05D004213 ORTHO05D005091 3.7e-94 348.6 223 74.9
Sopen09g030140 Solanum pennellii HOM05D004213 ORTHO05D005091 1.8e-93 346.3 233 73.0
PGSC0003DMG400031793 Solanum tuberosum HOM05D004213 ORTHO05D005091 1.8e-93 346.3 233 73.0
Nitab4.5_0000116g0380 Nicotiana tabacum HOM05D004213 ORTHO05D005091 2.4e-93 345.9 230 73.9
PGSC0003DMG400032548 Solanum tuberosum HOM05D004213 ORTHO05D005091 3.1e-93 345.5 233 73.4
CSS0029792 Camellia sinensis var. sinensis HOM05D004213 ORTHO05D005091 4.1e-93 345.1 235 72.8
CSS0049269 Camellia sinensis var. sinensis HOM05D004213 ORTHO05D005091 4.1e-93 345.1 235 72.8
Sopen04g004260 Solanum pennellii HOM05D004213 ORTHO05D005091 9.2e-93 344.0 222 74.8
ATR0751G024 Amborella trichopoda HOM05D004213 ORTHO05D005091 2.7e-92 342.4 221 74.2
Oeu004904.1 Olea europaea HOM05D004213 ORTHO05D005091 2.7e-92 342.4 222 73.9
Solyc09g075370.3 Solanum lycopersicum HOM05D004213 ORTHO05D005091 2.7e-92 342.4 234 73.5
CDE10G0889 Ceratophyllum demersum HOM05D004213 ORTHO05D005091 4.5e-92 341.7 219 71.7
EL10Ac1g01391 Beta vulgaris HOM05D004213 ORTHO05D005091 5.9e-92 341.3 231 72.7
CsaV3_7G028460 Cucumis sativus L. HOM05D004213 ORTHO05D005091 5.9e-92 341.3 233 71.7
AUR62017900 Chenopodium quinoa HOM05D004213 ORTHO05D005091 7.8e-92 340.9 234 72.2
Glyma.15G111800 Glycine max HOM05D004213 ORTHO05D005091 1.0e-91 340.5 219 75.8
HPP92_022817 Vanilla planifolia HOM05D004213 ORTHO05D005091 2.3e-91 339.3 236 71.6
Ah.02g117780 Amaranthus hybridus HOM05D004213 ORTHO05D005091 5.0e-91 338.2 231 71.9
BraA03t11766Z Brassica rapa HOM05D004213 ORTHO05D005091 6.6e-91 337.8 221 71.9
A03p25480 Brassica napus HOM05D004213 ORTHO05D005091 8.6e-91 337.4 221 71.9
Aa31LG1G27530 Aethionema arabicum HOM05D004213 ORTHO05D005091 3.3e-90 335.5 219 72.6
BraA04t18889Z Brassica rapa HOM05D005821 ORTHO05D006649 4.3e-90 335.1 219 71.2
Zm00001eb381110 Zea mays HOM05D004213 ORTHO05D005091 4.3e-90 335.1 224 72.3
BcaB01g03237 Brassica carinata HOM05D004213 ORTHO05D005091 5.6e-90 334.7 225 71.1
BcaC01g05093 Brassica carinata HOM05D004213 ORTHO05D005091 7.3e-90 334.3 221 71.0
C03p30410 Brassica napus HOM05D004213 ORTHO05D005091 7.3e-90 334.3 221 71.0
CiPaw.02G035500 Carya illinoinensis HOM05D004213 ORTHO05D005091 1.2e-89 333.6 234 69.7
Thhalv10008660m.g Eutrema salsugineum HOM05D004213 ORTHO05D005091 1.2e-89 333.6 235 69.4
Glyma.09G007400 Glycine max HOM05D004213 ORTHO05D005091 1.2e-89 333.6 219 74.9
Carub.0001s1438 Capsella rubella HOM05D004213 ORTHO05D005091 1.6e-89 333.2 219 72.1
BolC3t15389H Brassica oleracea HOM05D004213 ORTHO05D005091 2.1e-89 332.8 221 71.0
BcaC02g07022 Brassica carinata HOM05D004213 ORTHO05D005091 2.8e-89 332.4 219 69.9
AL1G26590 Arabidopsis lyrata HOM05D004213 ORTHO05D005091 4.7e-89 331.6 219 71.7
AT1G14620 Arabidopsis thaliana HOM05D004213 ORTHO05D005091 4.7e-89 331.6 219 71.7
C04p72100 Brassica napus HOM05D005821 ORTHO05D006649 4.7e-89 331.6 219 69.9
Lj9A589G62 Lonicera japonica HOM05D004213 ORTHO05D005091 4.7e-89 331.6 234 70.5
AUR62003587 Chenopodium quinoa HOM05D004213 ORTHO05D005091 8.0e-89 330.9 234 70.9
Os06g0300600 Oryza sativa ssp. japonica HOM05D004213 ORTHO05D005091 1.0e-88 330.5 207 75.8
CARHR015120 Cardamine hirsuta HOM05D004213 ORTHO05D005091 1.8e-88 329.7 235 68.5
Sp1g12980 Schrenkiella parvula HOM05D004213 ORTHO05D005091 1.8e-88 329.7 235 68.5
Sp4g28190 Schrenkiella parvula HOM05D004213 ORTHO05D005091 2.3e-88 329.3 219 70.3
unitig_0.g337 Utricularia gibba HOM05D004213 ORTHO05D005091 1.2e-87 327.0 231 68.8
DCAR_025215 Daucus carota HOM05D004213 ORTHO05D005091 2.0e-87 326.2 231 69.7
CiPaw.01G067700 Carya illinoinensis HOM05D004213 ORTHO05D005091 3.4e-87 325.5 234 70.9
SalBow3G3674 Salvia bowleyana HOM05D004213 ORTHO05D005091 3.4e-87 325.5 213 73.7
Manes.05G029000 Manihot esculenta HOM05D004213 ORTHO05D005091 5.7e-87 324.7 234 70.1
MSTRG.17300 Avicennia marina HOM05D004213 ORTHO05D005091 1.7e-86 323.2 223 71.3
SGA_v2.0_scaffold4G02277 Striga asiatica HOM05D004213 ORTHO05D005091 1.7e-86 323.2 275 61.5
Gohir.A08G128100 Gossypium hirsutum HOM05D004213 ORTHO05D005091 2.9e-86 322.4 219 74.0
Nn1g07606 Nelumbo nucifera HOM05D004213 ORTHO05D005091 2.9e-86 322.4 221 71.0
Aqoxy5G03866 Aquilegia oxysepala HOM05D004213 ORTHO05D005091 6.4e-86 321.2 224 70.1
Peaxi162Scf00037g01020 Petunia axillaris HOM05D004213 ORTHO05D005091 1.6e-84 316.6 234 68.8
Cc02_g38590 Coffea canephora HOM05D004213 ORTHO05D005091 3.9e-83 312.0 242 65.7
ECA236G3941 Erigeron canadensis HOM05D004213 ORTHO05D005091 1.2e-81 307.0 233 66.5
Lsat_1_v5_gn_7_2701 Lactuca sativa HOM05D004213 ORTHO05D005091 8.0e-81 304.3 237 66.7
Dinv32523 Davidia involucrata HOM05D004213 ORTHO05D005091 6.4e-78 294.7 186 77.4
Gorai.009G392100 Gossypium raimondii HOM05D004213 ORTHO05D005091 6.4e-78 294.7 219 69.9
Solyc04g009140.4 Solanum lycopersicum HOM05D004213 ORTHO05D005091 1.6e-76 290.0 180 77.2
Lj9A590G54 Lonicera japonica HOM05D004213 ORTHO05D005091 5.0e-75 285.0 235 64.3
Nn1g07699 Nelumbo nucifera HOM05D004213 ORTHO05D005091 9.9e-71 270.8 228 62.7
BolC4t28619H Brassica oleracea HOM05D005821 ORTHO05D005091 2.9e-70 269.2 212 61.3
SEGI_36995 Sequoiadendron giganteum HOM05D004213 ORTHO05D005091 4.6e-68 261.9 227 55.5
Cpa.g.sc11.71 Carica papaya HOM05D004213 ORTHO05D005091 3.0e-67 259.2 234 59.0
Gohir.D04G091100 Gossypium hirsutum HOM05D004213 ORTHO05D005091 1.9e-66 256.5 162 76.5
CAN.G472.27 Capsicum annuum HOM05D004213 ORTHO05D005091 6.2e-65 251.5 159 74.2
Rhsim09G0104800 Rhododendron simsii HOM05D004213 ORTHO05D005091 8.4e-62 241.1 193 65.8
DCAR_009468 Daucus carota HOM05D004213 ORTHO05D005091 9.2e-61 237.7 157 71.3
Prupe.2G231400 Prunus persica HOM05D004213 ORTHO05D005091 5.1e-59 231.9 145 83.4
Sc16g0003870 Simmondsia chinensis HOM05D004213 ORTHO05D005091 4.3e-58 228.8 188 64.4
Pp3c13_9680 Physcomitrium patens HOM05D004213 ORTHO05D005091 9.0e-56 221.1 226 51.3
Mapoly0025s0100 Marchantia polymorpha HOM05D004213 ORTHO05D005091 1.3e-54 217.2 240 46.7
AagrBONN_evm.TU.Sc2ySwM_228.381 Anthoceros agrestis HOM05D004213 ORTHO05D005091 2.7e-52 209.5 213 51.2
AagrBONN_evm.TU.Sc2ySwM_117.3677 Anthoceros agrestis HOM05D004213 ORTHO05D005091 1.3e-51 207.2 213 50.7
COL.COLO4_07824 Corchorus olitorius HOM05D004213 ORTHO05D005091 1.5e-50 203.8 186 57.0
MBI16_g10331_MAGBIO Magnolia biondii HOM05D004213 ORTHO05D005091 1.9e-50 203.4 120 76.7
CARHR141400 Cardamine hirsuta HOM05D004213 ORTHO05D005091 4.5e-47 192.2 171 59.1
Medtr7g117435 Medicago truncatula HOM05D004213 ORTHO05D005091 7.1e-45 184.9 134 62.7
CBR_g37539 Chara braunii HOM05D004213 ORTHO05D005091 4.0e-40 169.1 209 44.0
MD05G1056600 Malus domestica HOM05D004213 ORTHO05D005091 5.3e-40 168.7 158 58.9
Atru.chr1.2758 Acer truncatum HOM05D004213 ORTHO05D005091 9.3e-37 157.9 220 45.9
EL10Ac6g15290 Beta vulgaris HOM05D004213 ORTHO05D012437 6.0e-36 155.2 99 70.7
VMungo0331G0027 Vigna mungo HOM05D004213 ORTHO05D005091 5.6e-34 148.7 85 85.9
C04p01920 Brassica napus HOM05D004213 ORTHO05D005091 2.1e-33 146.7 152 48.7
SMO271G0103 Selaginella moellendorffii HOM05D004213 ORTHO05D005091 3.7e-33 146.0 226 40.7
FAN06G3959 Fragaria x ananassa HOM05D004213 ORTHO05D005091 1.7e-30 137.1 74 93.2
FvH4_7g22001 Fragaria vesca HOM05D004065 ORTHO05D004806 2.2e-30 136.7 73 94.5
FAN01G2126 Fragaria x ananassa HOM05D004065 ORTHO05D004806 3.8e-30 136.0 73 94.5
FAN01G2862 Fragaria x ananassa HOM05D004213 ORTHO05D005091 6.5e-30 135.2 74 91.9
SHI13371 Sapria himalayana HOM05D004213 ORTHO05D005091 1.0e-27 127.9 104 64.4
MBI16_g18199_MAGBIO Magnolia biondii HOM05D004213 ORTHO05D005091 4.1e-24 115.9 86 69.8
MCO04G325 Micromonas commoda HOM05D004213 ORTHO05D005091 5.0e-22 109.0 195 31.8
BcaC02g12495 Brassica carinata HOM05D004213 ORTHO05D005091 4.2e-21 105.9 90 55.6
SMO308G0077 Selaginella moellendorffii HOM05D004213 ORTHO05D005091 1.1e-18 97.8 108 46.3
PGSC0003DMG402011505 Solanum tuberosum HOM05D004213 ORTHO05D005091 5.7e-18 95.5 67 68.7
CAN.G467.8 Capsicum annuum HOM05D004213 ORTHO05D005091 1.1e-16 91.3 74 66.2
FAN03G3471 Fragaria x ananassa HOM05D004213 ORTHO05D005091 1.8e-16 90.5 59 78.0
Aa31LG5G23500 Aethionema arabicum HOM05D004213 ORTHO05D005091 4.5e-15 85.9 56 78.6
Cre03.g193550 Chlamydomonas reinhardtii HOM05D004213 ORTHO05D005091 1.0e-14 84.7 225 29.3
RcHm_v2.0_Chr1g0366151 Rosa chinensis HOM05D004213 ORTHO05D005091 1.4e-11 74.3 52 73.1
Cfa024785 Carpinus fangiana HOM05D004213 ORTHO05D122664 2.6e-10 70.1 142 33.1
Actinidia10076 Actinidia chinensis HOM05D006382 ORTHO05D008938 2.8e-09 66.6 53 73.6
COL.COLO4_35570 Corchorus olitorius HOM05D002230 ORTHO05D002441 3.7e-09 66.2 53 71.7
Ah.13g065600 Amaranthus hybridus HOM05D000001 ORTHO05D010162 1.8e-08 63.9 51 66.7
Rhsim07G0218600 Rhododendron simsii HOM05D004213 ORTHO05D339259 3.1e-08 63.2 39 69.2
PGSC0003DMG401011505 Solanum tuberosum HOM05D004213 ORTHO05D005091 4.5e-07 59.3 53 58.5


User provided reference genes

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