Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN06G3489 Fragaria x ananassa HOM05D006082 ORTHO05D007616 8.1e-126 453.8 230 100.0
FvH4_7g17940 Fragaria vesca HOM05D006082 ORTHO05D007616 6.9e-125 450.7 230 99.1
FAN06G1515 Fragaria x ananassa HOM05D006082 ORTHO05D007616 7.6e-124 447.2 236 97.5
FAN03G2817 Fragaria x ananassa HOM05D006082 ORTHO05D007616 7.9e-121 437.2 240 94.2
RcHm_v2.0_Chr1g0361381 Rosa chinensis HOM05D006082 ORTHO05D007616 1.3e-118 429.9 230 94.8
MD01G1091900 Malus domestica HOM05D006082 ORTHO05D007616 1.3e-112 409.8 229 89.5
Prupe.2G201100 Prunus persica HOM05D006082 ORTHO05D007616 5.1e-112 407.9 230 89.6
FAN10G2982 Fragaria x ananassa HOM05D006082 ORTHO05D007616 3.3e-111 405.2 243 88.5
FAN01G2730 Fragaria x ananassa HOM05D006082 ORTHO05D007616 2.2e-99 365.9 228 86.8
GSVIVG01027464001 Vitis vinifera HOM05D006082 ORTHO05D007616 4.7e-81 305.1 223 71.3
Duzib133G0864 Durio zibethinus HOM05D006082 ORTHO05D007616 5.7e-79 298.1 223 67.7
Gorai.007G114300 Gossypium raimondii HOM05D006082 ORTHO05D007616 2.8e-78 295.8 223 66.4
Gohir.A11G102200 Gossypium hirsutum HOM05D006082 ORTHO05D007616 3.7e-78 295.4 223 66.8
QL01p017595 Quercus lobata HOM05D006082 ORTHO05D007616 3.1e-77 292.4 221 68.8
Potri.014G107300 Populus trichocarpa HOM05D006082 ORTHO05D007616 2.9e-75 285.8 223 67.7
Ciclev10022037m.g Citrus clementina HOM05D006082 ORTHO05D007616 7.2e-74 281.2 223 65.9
Thecc.01G331100 Theobroma cacao HOM05D006082 ORTHO05D007616 1.8e-72 276.6 223 65.9
TWI14G1025 Tripterygium wilfordii HOM05D006082 ORTHO05D007616 2.2e-70 269.6 223 62.8
TAR375G0813 Trochodendron aralioides HOM05D006082 ORTHO05D007616 2.8e-70 269.2 230 61.7
Haze_15761 Corylus avellana HOM05D006082 ORTHO05D007616 4.8e-70 268.5 223 65.0
Atru.chr5.795 Acer truncatum HOM05D006082 ORTHO05D007616 5.4e-69 265.0 222 62.2
Dinv04258 Davidia involucrata HOM05D006082 ORTHO05D007616 1.2e-68 263.8 223 61.4
Actinidia33031 Actinidia chinensis HOM05D006082 ORTHO05D007616 1.6e-68 263.5 224 62.5
Eucgr.G03261 Eucalyptus grandis HOM05D006082 ORTHO05D007616 2.5e-66 256.1 222 59.9
CANSAT56G1086 Cannabis sativa HOM05D006082 ORTHO05D007616 4.2e-66 255.4 210 65.7
ECA238G2330 Erigeron canadensis HOM05D006082 ORTHO05D007616 7.2e-66 254.6 220 58.6
TPR.G16094 Trifolium pratense HOM05D006082 ORTHO05D007616 2.8e-65 252.7 223 60.5
HanXRQChr14g0454421 Helianthus annuus HOM05D006082 ORTHO05D007616 5.2e-64 248.4 222 59.0
Lalb_Chr17g0343121 Lupinus albus HOM05D006082 ORTHO05D007616 5.2e-64 248.4 224 60.3
Lj1g0004702 Lotus japonicus HOM05D006082 ORTHO05D007616 8.9e-64 247.7 222 57.7
MSTRG.15681 Avicennia marina HOM05D006082 ORTHO05D007616 1.5e-63 246.9 222 58.1
Phvul.001G121700 Phaseolus vulgaris HOM05D006082 ORTHO05D007616 1.5e-63 246.9 223 58.7
Medtr7g089460 Medicago truncatula HOM05D006082 ORTHO05D007616 5.7e-63 245.0 223 59.2
Gohir.D11G106800 Gossypium hirsutum HOM05D006082 ORTHO05D007616 1.3e-62 243.8 223 58.3
Psat3g079600 Pisum sativum HOM05D006082 ORTHO05D007616 1.7e-62 243.4 223 58.7
Migut.L00265 Erythranthe guttata HOM05D006082 ORTHO05D007616 2.2e-62 243.0 222 55.9
Nn1g00467 Nelumbo nucifera HOM05D006082 ORTHO05D007616 1.8e-61 240.0 220 59.1
Glyma.19G129400 Glycine max HOM05D006082 ORTHO05D007616 2.4e-61 239.6 230 57.0
Glyma.03G126300 Glycine max HOM05D006082 ORTHO05D007616 3.1e-61 239.2 223 57.0
Cc03_g11310 Coffea canephora HOM05D006082 ORTHO05D007616 7.0e-61 238.0 222 57.7
CARHR250170 Cardamine hirsuta HOM05D006082 ORTHO05D007616 1.6e-60 236.9 226 57.5
PGR031G0479 Punica granatum HOM05D006082 ORTHO05D007616 2.0e-60 236.5 235 57.0
PGSC0003DMG400016241 Solanum tuberosum HOM05D006082 ORTHO05D007616 5.9e-60 235.0 229 55.5
CAN.G691.19 Capsicum annuum HOM05D006082 ORTHO05D007616 1.0e-59 234.2 229 55.0
Solyc11g008790.3 Solanum lycopersicum HOM05D006082 ORTHO05D007616 5.0e-59 231.9 223 56.5
Sopen11g004570 Solanum pennellii HOM05D006082 ORTHO05D007616 5.0e-59 231.9 223 56.5
AL1G11510 Arabidopsis lyrata HOM05D006082 ORTHO05D007616 5.6e-58 228.4 222 55.9
THA.LOC104815904 Tarenaya hassleriana HOM05D006082 ORTHO05D007616 5.6e-58 228.4 222 54.5
Aqoxy5G00354 Aquilegia oxysepala HOM05D006082 ORTHO05D007616 7.3e-58 228.0 223 53.4
BraA10t42369Z Brassica rapa HOM05D006082 ORTHO05D007616 1.2e-57 227.3 222 55.9
Sp1g01290 Schrenkiella parvula HOM05D006082 ORTHO05D007616 1.2e-57 227.3 221 55.2
AL6G51830 Arabidopsis lyrata HOM05D006082 ORTHO05D007616 1.6e-57 226.9 219 58.0
BolC5t28877H Brassica oleracea HOM05D006082 ORTHO05D007616 2.8e-57 226.1 222 55.4
A10p00890 Brassica napus HOM05D006082 ORTHO05D007616 3.6e-57 225.7 222 55.4
Sp6g01450 Schrenkiella parvula HOM05D006082 ORTHO05D007616 4.7e-57 225.3 224 57.1
CARHR001490 Cardamine hirsuta HOM05D006082 ORTHO05D007616 6.1e-57 224.9 222 55.4
Carub.0006s3568 Capsella rubella HOM05D006082 ORTHO05D007616 8.0e-57 224.6 220 57.3
ATR1136G056 Amborella trichopoda HOM05D006082 ORTHO05D007616 1.4e-56 223.8 222 52.7
C09p01160 Brassica napus HOM05D006082 ORTHO05D007616 1.4e-56 223.8 224 56.7
PSO675G6409 Papaver somniferum HOM05D006082 ORTHO05D007616 1.4e-56 223.8 223 56.1
C05p00920 Brassica napus HOM05D006082 ORTHO05D007616 2.3e-56 223.0 222 54.5
Carub.0001s0120 Capsella rubella HOM05D006082 ORTHO05D007616 2.3e-56 223.0 222 53.6
PSO675G6921 Papaver somniferum HOM05D006082 ORTHO05D007616 3.1e-56 222.6 223 55.6
A09p01070 Brassica napus HOM05D006082 ORTHO05D007616 4.0e-56 222.2 222 57.2
Thhalv10028930m.g Eutrema salsugineum HOM05D006082 ORTHO05D007616 4.0e-56 222.2 223 55.6
BcaB03g13546 Brassica carinata HOM05D006082 ORTHO05D007616 5.2e-56 221.9 222 53.6
arahy.Tifrunner.gnm1.ann1.9R6DDK Arachis hypogaea HOM05D006082 ORTHO05D007616 5.8e-55 218.4 223 53.4
ClCG05G000050 Citrullus lanatus HOM05D006082 ORTHO05D007616 5.8e-55 218.4 235 53.6
arahy.Tifrunner.gnm1.ann1.6SRZ86 Arachis hypogaea HOM05D006082 ORTHO05D007616 9.8e-55 217.6 223 53.4
CANSAT56G0035 Cannabis sativa HOM05D006082 ORTHO05D007616 9.8e-55 217.6 210 60.0
CsaV3_3G007110 Cucumis sativus L. HOM05D006082 ORTHO05D007616 1.7e-54 216.9 222 53.6
HPP92_015681 Vanilla planifolia HOM05D006082 ORTHO05D007616 3.7e-54 215.7 217 52.5
Ca_08380_v3 Cicer arietinum L. HOM05D006082 ORTHO05D007616 4.9e-54 215.3 197 59.4
Thhalv10008618m.g Eutrema salsugineum HOM05D006082 ORTHO05D007616 8.3e-54 214.5 220 55.5
Manes.05G014900 Manihot esculenta HOM05D006082 ORTHO05D007616 1.9e-53 213.4 172 63.4
MELO3C005932.2 Cucumis melo HOM05D006082 ORTHO05D007616 2.4e-53 213.0 228 52.2
BolC9t53049H Brassica oleracea HOM05D006082 ORTHO05D007616 6.0e-52 208.4 253 50.2
BraA09t35778Z Brassica rapa HOM05D006082 ORTHO05D007616 1.3e-51 207.2 250 50.8
CDE08G0270 Ceratophyllum demersum HOM05D006082 ORTHO05D007616 3.9e-51 205.7 223 49.3
CiPaw.01G087100 Carya illinoinensis HOM05D006082 ORTHO05D007616 1.9e-50 203.4 179 62.0
Aa31LG1G10340 Aethionema arabicum HOM05D006082 ORTHO05D007616 1.6e-49 200.3 235 51.1
COL.COLO4_23067 Corchorus olitorius HOM05D006082 ORTHO05D007616 6.2e-49 198.4 143 65.0
AUR62016743 Chenopodium quinoa HOM05D006082 ORTHO05D007616 2.3e-48 196.4 221 48.4
MD07G1162500 Malus domestica HOM05D006082 ORTHO05D007616 6.8e-48 194.9 148 68.2
Ah.01g019340 Amaranthus hybridus HOM05D006082 ORTHO05D007616 1.5e-47 193.7 221 48.4
AT4G01510 Arabidopsis thaliana HOM05D006082 ORTHO05D007616 5.8e-47 191.8 193 56.5
Os03g0784300 Oryza sativa ssp. japonica HOM05D006082 ORTHO05D007616 2.2e-46 189.9 217 47.5
Nitab4.5_0000743g0220 Nicotiana tabacum HOM05D006082 ORTHO05D007616 8.3e-46 188.0 229 49.3
unitig_899.g14456 Utricularia gibba HOM05D003044 ORTHO05D007616 7.0e-45 184.9 199 49.7
Lsat_1_v5_gn_2_88861 Lactuca sativa HOM05D006082 ORTHO05D007616 2.1e-44 183.3 198 54.0
SEGI_04405 Sequoiadendron giganteum HOM05D006082 ORTHO05D007616 2.7e-44 183.0 219 47.5
Aa31LG5G1260 Aethionema arabicum HOM05D006082 ORTHO05D007616 1.3e-43 180.6 220 48.2
MBI06_g35217_MAGBIO Magnolia biondii HOM05D006082 ORTHO05D007616 8.6e-43 177.9 218 50.0
vmacro11192 Vaccinium macrocarpon HOM05D006082 ORTHO05D007616 8.1e-41 171.4 305 40.7
CSS0012451 Camellia sinensis var. sinensis HOM05D006082 ORTHO05D007616 9.9e-39 164.5 191 51.8
Peaxi162Scf00090g00046 Petunia axillaris HOM05D006082 ORTHO05D007616 1.7e-38 163.7 251 45.0
Potri.002G181700 Populus trichocarpa HOM05D006082 ORTHO05D007616 1.9e-37 160.2 223 45.3
GSVIVG01003191001 Vitis vinifera HOM05D006082 ORTHO05D007616 7.8e-36 154.8 132 66.7
Sc24g0001860 Simmondsia chinensis HOM05D006082 ORTHO05D007616 2.3e-35 153.3 201 43.8
Zm00001eb059810 Zea mays HOM05D006082 ORTHO05D007616 1.1e-34 151.0 193 44.6
EL10Ac9g21719 Beta vulgaris HOM05D006082 ORTHO05D003517 4.3e-34 149.1 167 47.9
AT1G01020 Arabidopsis thaliana HOM05D006082 ORTHO05D007616 1.2e-33 147.5 179 48.0
C05p00960 Brassica napus HOM05D006082 ORTHO05D007616 1.6e-33 147.1 306 35.0
Pp3c10_9330 Physcomitrium patens HOM05D006082 ORTHO05D007616 1.2e-31 141.0 204 43.6
BolC5t28880H Brassica oleracea HOM05D006082 ORTHO05D007616 1.7e-30 137.1 298 34.6
Nitab4.5_0001677g0060 Nicotiana tabacum HOM05D006082 ORTHO05D007616 5.4e-29 132.1 279 36.2
Migut.L00585 Erythranthe guttata HOM05D006082 ORTHO05D007616 7.8e-28 128.3 88 62.5
Hma1.2p1_0451F.1_g155800 Hydrangea macrophylla HOM05D006082 ORTHO05D007616 7.8e-28 128.3 123 61.8
SEGI_20928 Sequoiadendron giganteum HOM05D006082 ORTHO05D007616 1.3e-27 127.5 137 47.4
Mapoly0050s0018 Marchantia polymorpha HOM05D006082 ORTHO05D007616 3.9e-27 125.9 220 35.9
AagrBONN_evm.TU.Sc2ySwM_340.22 Anthoceros agrestis HOM05D006082 ORTHO05D007616 5.1e-27 125.6 226 39.8
CBR_g1036 Chara braunii HOM05D006082 ORTHO05D007616 4.3e-26 122.5 233 33.5
SMO367G0224 Selaginella moellendorffii HOM05D006082 ORTHO05D007616 1.3e-25 120.9 213 36.6
DCAR_014739 Daucus carota HOM05D006082 ORTHO05D007616 1.4e-24 117.5 220 34.5
Hma1.2p1_0262F.1_g105255 Hydrangea macrophylla HOM05D006082 ORTHO05D007616 6.9e-24 115.2 75 66.7
Hma1.2p1_0451F.1_g155790 Hydrangea macrophylla HOM05D006082 ORTHO05D007616 4.4e-23 112.5 73 67.1
MD07G1162600 Malus domestica HOM05D006082 ORTHO05D007616 3.8e-22 109.4 65 87.7
arahy.Tifrunner.gnm1.ann1.PGF6M0 Arachis hypogaea HOM05D006082 ORTHO05D007616 1.2e-20 104.4 244 32.4
Sed0024729 Sechium edule HOM05D006082 ORTHO05D007616 1.6e-20 104.0 124 54.8
GSVIVG01003186001 Vitis vinifera HOM05D006082 ORTHO05D007616 3.9e-19 99.4 73 78.1
QL03p043604 Quercus lobata HOM05D006082 ORTHO05D007616 5.1e-19 99.0 195 39.5
RcHm_v2.0_Chr1g0361671 Rosa chinensis HOM05D006082 ORTHO05D007616 2.6e-15 86.7 114 52.6
C05p00940 Brassica napus HOM05D006082 ORTHO05D007616 2.2e-14 83.6 106 49.1
BcaC05g24597 Brassica carinata HOM05D006082 ORTHO05D007616 2.9e-14 83.2 196 31.6
RcHm_v2.0_Chr1g0361451 Rosa chinensis HOM05D006082 ORTHO05D007616 1.8e-11 73.9 37 94.6
SMO230G0051 Selaginella moellendorffii HOM05D006082 ORTHO05D007616 2.5e-10 70.1 167 32.3
RcHm_v2.0_Chr1g0333691 Rosa chinensis HOM05D006082 ORTHO05D007616 8.1e-09 65.1 34 91.2


User provided reference genes

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