Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN06G3475 Fragaria x ananassa HOM05D007869 ORTHO05D009962 1.1e-175 619.8 304 100.0
FAN10G0101 Fragaria x ananassa HOM05D007869 ORTHO05D009962 2.9e-163 578.6 285 99.3
FAN06G2096 Fragaria x ananassa HOM05D007869 ORTHO05D009962 3.2e-162 575.1 285 98.6
FAN03G1443 Fragaria x ananassa HOM05D007869 ORTHO05D009962 3.9e-160 568.2 285 97.9
FAN03G2169 Fragaria x ananassa HOM05D007869 ORTHO05D009962 3.9e-160 568.2 285 97.9
RcHm_v2.0_Chr1g0361741 Rosa chinensis HOM05D007869 ORTHO05D009962 9.7e-151 537.0 286 90.9
FAN10G1242 Fragaria x ananassa HOM05D007869 ORTHO05D009962 4.8e-142 508.1 249 98.4
FAN01G2503 Fragaria x ananassa HOM05D007869 ORTHO05D009962 1.4e-141 506.5 253 96.8
Prupe.2G203300 Prunus persica HOM05D007869 ORTHO05D009962 6.3e-126 454.5 284 77.1
Cfa003717 Carpinus fangiana HOM05D007869 ORTHO05D009962 5.7e-111 404.8 294 67.7
Haze_15765 Corylus avellana HOM05D007869 ORTHO05D009962 3.7e-110 402.1 294 67.0
FvH4_7g18090 Fragaria vesca HOM05D007869 ORTHO05D009962 2.0e-108 396.4 208 95.7
CANSAT56G0171 Cannabis sativa HOM05D007869 ORTHO05D009962 3.5e-108 395.6 285 66.0
CiPaw.02G045900 Carya illinoinensis HOM05D007869 ORTHO05D009962 4.0e-104 382.1 289 65.4
Manes.05G005500 Manihot esculenta HOM05D007869 ORTHO05D009962 4.1e-101 372.1 293 60.1
Duzib138G0629 Durio zibethinus HOM05D007869 ORTHO05D009962 2.7e-100 369.4 293 61.1
Lalb_Chr04g0258981 Lupinus albus HOM05D007869 ORTHO05D009962 1.5e-98 363.6 287 62.4
Atru.chr5.803 Acer truncatum HOM05D007869 ORTHO05D009962 9.5e-98 360.9 293 61.1
Ciclev10021277m.g Citrus clementina HOM05D007869 ORTHO05D009962 2.8e-97 359.4 285 62.5
Glyma.20G001800 Glycine max HOM05D007869 ORTHO05D009962 4.7e-97 358.6 297 61.3
Glyma.09G283900 Glycine max HOM05D007869 ORTHO05D009962 6.1e-97 358.2 295 61.7
Thecc.01G330400 Theobroma cacao HOM05D007869 ORTHO05D009962 6.1e-97 358.2 286 61.2
TWI14G0946 Tripterygium wilfordii HOM05D007869 ORTHO05D009962 6.1e-97 358.2 301 60.1
Lalb_Chr17g0337801 Lupinus albus HOM05D007869 ORTHO05D009962 2.2e-94 349.7 287 59.6
COL.COLO4_23074 Corchorus olitorius HOM05D007869 ORTHO05D009962 2.9e-94 349.4 296 59.1
VMungo0251G2255 Vigna mungo HOM05D007869 ORTHO05D009962 1.1e-93 347.4 287 58.9
Cpa.g.sc57.67 Carica papaya HOM05D007869 ORTHO05D009962 1.6e-92 343.6 278 61.5
Phvul.003G003700 Phaseolus vulgaris HOM05D007869 ORTHO05D009962 3.5e-92 342.4 288 59.7
Sabra02G0132700 Salix brachista HOM05D007869 ORTHO05D009962 4.6e-92 342.0 283 58.7
Sabra14G0079800 Salix brachista HOM05D007869 ORTHO05D009962 4.6e-92 342.0 282 58.9
Potri.014G108300 Populus trichocarpa HOM05D007869 ORTHO05D009962 6.0e-92 341.7 282 57.8
TPR.G29782 Trifolium pratense HOM05D007869 ORTHO05D009962 3.0e-91 339.3 291 58.8
Lj2g0022280 Lotus japonicus HOM05D007869 ORTHO05D009962 1.1e-90 337.4 302 59.3
TAR374G1227 Trochodendron aralioides HOM05D007869 ORTHO05D009962 3.3e-90 335.9 294 55.8
Nn3g18755 Nelumbo nucifera HOM05D007869 ORTHO05D009962 1.2e-89 334.0 289 57.8
Medtr1g038260 Medicago truncatula HOM05D007869 ORTHO05D009962 2.1e-89 333.2 288 56.9
Psat6g099760 Pisum sativum HOM05D007869 ORTHO05D009962 2.6e-87 326.2 276 58.7
FvH4_7g18120 Fragaria vesca HOM05D007869 ORTHO05D009962 1.3e-86 323.9 167 96.4
Sc01g0002100 Simmondsia chinensis HOM05D007869 ORTHO05D009962 1.2e-84 317.4 272 55.1
ClCG06G002380 Citrullus lanatus HOM05D007869 ORTHO05D009962 1.3e-83 313.9 270 57.8
CsaV3_6G008420 Cucumis sativus L. HOM05D007869 ORTHO05D009962 1.7e-83 313.5 277 55.6
THA.LOC104825914 Tarenaya hassleriana HOM05D007869 ORTHO05D009962 1.7e-83 313.5 274 56.9
Ah.05g178800 Amaranthus hybridus HOM05D007869 ORTHO05D009962 5.1e-83 312.0 278 56.8
EL10Ac1g00161 Beta vulgaris HOM05D007869 ORTHO05D009962 8.1e-81 304.7 297 53.5
AUR62004577 Chenopodium quinoa HOM05D007869 ORTHO05D009962 2.3e-80 303.1 296 54.1
Thhalv10009953m.g Eutrema salsugineum HOM05D007869 ORTHO05D009962 1.2e-79 300.8 288 52.4
Sp1g01350 Schrenkiella parvula HOM05D007869 ORTHO05D009962 1.2e-79 300.8 288 53.1
AUR62023523 Chenopodium quinoa HOM05D007869 ORTHO05D009962 3.4e-79 299.3 279 54.8
CARHR001570 Cardamine hirsuta HOM05D007869 ORTHO05D009962 1.7e-78 297.0 278 52.9
Sed0016589 Sechium edule HOM05D007869 ORTHO05D009962 2.2e-78 296.6 256 58.6
BolC5t28887H Brassica oleracea HOM05D007869 ORTHO05D009962 2.9e-78 296.2 277 52.7
BraA10t42381Z Brassica rapa HOM05D007869 ORTHO05D009962 2.9e-78 296.2 278 52.5
A10p01030 Brassica napus HOM05D007869 ORTHO05D009962 8.3e-78 294.7 278 51.8
C05p01060 Brassica napus HOM05D007869 ORTHO05D009962 1.1e-77 294.3 277 52.3
BcaC05g24607 Brassica carinata HOM05D007869 ORTHO05D009962 1.6e-76 290.4 268 53.0
Aa31LG1G10230 Aethionema arabicum HOM05D007869 ORTHO05D009962 2.1e-76 290.0 281 52.7
MBI04_g38990_MAGBIO Magnolia biondii HOM05D007869 ORTHO05D009962 2.7e-76 289.7 288 53.5
Carub.0001s0129 Capsella rubella HOM05D007869 ORTHO05D009962 6.0e-76 288.5 282 52.1
Actinidia28076 Actinidia chinensis HOM05D007869 ORTHO05D009962 3.6e-73 279.3 215 62.8
MELO3C022297.2 Cucumis melo HOM05D007869 ORTHO05D009962 3.1e-72 276.2 275 52.4
AT2G41610 Arabidopsis thaliana HOM05D007869 ORTHO05D009962 6.8e-72 275.0 275 52.0
CSS0017560 Camellia sinensis var. sinensis HOM05D007869 ORTHO05D009962 6.8e-72 275.0 239 59.8
arahy.Tifrunner.gnm1.ann1.WBP5Q2 Arachis hypogaea HOM05D007869 ORTHO05D009962 9.9e-71 271.2 266 52.3
AL4G39680 Arabidopsis lyrata HOM05D007869 ORTHO05D009962 1.3e-70 270.8 278 50.7
arahy.Tifrunner.gnm1.ann1.2P25JP Arachis hypogaea HOM05D007869 ORTHO05D009962 4.9e-70 268.9 267 52.1
ATR0579G134 Amborella trichopoda HOM05D007869 ORTHO05D009962 2.4e-69 266.5 289 47.8
Medtr1g038290 Medicago truncatula HOM05D007869 ORTHO05D009962 1.5e-66 257.3 288 46.9
HPP92_007374 Vanilla planifolia HOM05D007869 ORTHO05D009962 3.6e-65 252.7 271 48.0
Zm00001eb010960 Zea mays HOM05D007869 ORTHO05D009962 2.4e-64 250.0 292 46.6
PSO384G3553 Papaver somniferum HOM05D007869 ORTHO05D009962 5.3e-64 248.8 324 44.8
Gorai.004G148700 Gossypium raimondii HOM05D007869 ORTHO05D009962 1.5e-63 247.3 183 65.0
Gohir.A08G122700 Gossypium hirsutum HOM05D007869 ORTHO05D009962 2.6e-63 246.5 183 65.0
Gohir.D08G144000 Gossypium hirsutum HOM05D007869 ORTHO05D009962 2.6e-63 246.5 183 65.0
Zm00001eb398460 Zea mays HOM05D007869 ORTHO05D009962 2.6e-63 246.5 294 46.6
Os03g0253600 Oryza sativa ssp. japonica HOM05D007869 ORTHO05D009962 2.2e-62 243.4 246 50.8
Os10g0200700 Oryza sativa ssp. japonica HOM05D007869 ORTHO05D009962 3.8e-62 242.7 250 50.0
PSO135G1025 Papaver somniferum HOM05D007869 ORTHO05D009962 3.2e-61 239.6 325 43.4
MBI04_g27772_MAGBIO Magnolia biondii HOM05D007869 ORTHO05D009962 2.3e-59 233.4 224 56.2
Lju170C22T1 Lonicera japonica HOM05D007869 ORTHO05D009962 8.1e-57 224.9 219 53.0
Rhsim01G0181500 Rhododendron simsii HOM05D007869 ORTHO05D009962 5.8e-55 218.8 191 57.1
Dinv32655 Davidia involucrata HOM05D007869 ORTHO05D009962 1.8e-40 170.6 143 55.9
Duzib133G0538 Durio zibethinus HOM05D007869 ORTHO05D009962 2.0e-23 114.0 193 33.7
SEGI_25376 Sequoiadendron giganteum HOM05D007869 ORTHO05D009962 9.4e-13 78.6 112 42.9


User provided reference genes

Program Settings