Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN06G3471 Fragaria x ananassa HOM05D003632 ORTHO05D017240 2.4e-47 191.8 94 100.0
FvH4_7g02670 Fragaria vesca HOM05D003632 ORTHO05D017240 1.7e-37 159.1 82 96.3
FvH4_7g05210 Fragaria vesca HOM05D003632 ORTHO05D017240 8.2e-24 113.6 70 84.3
FAN10G0294 Fragaria x ananassa HOM05D003632 ORTHO05D005497 5.3e-23 110.9 71 83.1
FAN06G1370 Fragaria x ananassa HOM05D006280 ORTHO05D007876 1.2e-22 109.8 70 84.3
FAN06G4184 Fragaria x ananassa HOM05D003632 ORTHO05D005497 1.5e-22 109.4 100 64.0
FAN10G0430 Fragaria x ananassa HOM05D003632 ORTHO05D005497 2.0e-22 109.0 72 80.6
FvH4_1g30291 Fragaria vesca HOM05D003632 ORTHO05D005497 3.4e-22 108.2 71 81.7
FvH4_7g03800 Fragaria vesca HOM05D003632 ORTHO05D005497 3.4e-22 108.2 71 81.7
FAN03G3001 Fragaria x ananassa HOM05D003632 ORTHO05D005497 3.4e-22 108.2 71 81.7
FAN19G1728 Fragaria x ananassa HOM05D003632 ORTHO05D005497 3.4e-22 108.2 71 81.7
FAN26G0913 Fragaria x ananassa HOM05D003632 ORTHO05D005497 7.6e-22 107.1 69 81.2
RcHm_v2.0_Chr3g0491051 Rosa chinensis HOM05D003632 ORTHO05D005497 1.3e-21 106.3 71 80.3
FAN23G1588 Fragaria x ananassa HOM05D003632 ORTHO05D005497 1.7e-21 105.9 71 80.3
FAN28G2388 Fragaria x ananassa HOM05D003632 ORTHO05D017240 2.2e-21 105.5 69 79.7
FAN26G0474 Fragaria x ananassa HOM05D003632 ORTHO05D017240 6.5e-21 104.0 72 76.4
FAN28G2113 Fragaria x ananassa HOM05D003632 ORTHO05D005497 6.5e-21 104.0 71 78.9
FAN28G1390 Fragaria x ananassa HOM05D003632 ORTHO05D017240 1.9e-20 102.4 72 75.0
MD00G1159400 Malus domestica HOM05D003632 ORTHO05D005497 1.9e-20 102.4 71 76.1
MD00G1204700 Malus domestica HOM05D003632 ORTHO05D005497 1.9e-20 102.4 71 76.1
Potri.014G149200 Populus trichocarpa HOM05D003632 ORTHO05D005497 4.2e-20 101.3 65 80.0
CANSAT25G0240 Cannabis sativa HOM05D003632 ORTHO05D005497 9.3e-20 100.1 71 74.6
FAN06G1218 Fragaria x ananassa HOM05D003632 ORTHO05D005497 1.6e-19 99.4 66 80.3
Potri.002G235700 Populus trichocarpa HOM05D003632 ORTHO05D005497 1.6e-19 99.4 65 78.5
QL02p016456 Quercus lobata HOM05D003632 ORTHO05D005497 1.6e-19 99.4 82 63.4
Prupe.7G271900 Prunus persica HOM05D003632 ORTHO05D005497 3.5e-19 98.2 71 73.2
Thecc.08G097100 Theobroma cacao HOM05D003632 ORTHO05D005497 4.6e-19 97.8 72 70.8
COL.COLO4_04620 Corchorus olitorius HOM05D003632 ORTHO05D005497 6.0e-19 97.4 72 70.8
Atru.chr13.15 Acer truncatum HOM05D003632 ORTHO05D005497 7.9e-19 97.1 71 70.4
Manes.05G198000 Manihot esculenta HOM05D003632 ORTHO05D005497 7.9e-19 97.1 61 80.3
TAR381G0543 Trochodendron aralioides HOM05D003632 ORTHO05D005497 1.0e-18 96.7 71 71.8
CANSAT01G2380 Cannabis sativa HOM05D003632 ORTHO05D005497 1.3e-18 96.3 65 76.9
Haze_22896 Corylus avellana HOM05D003632 ORTHO05D005497 1.3e-18 96.3 71 70.4
Medtr5g007380 Medicago truncatula HOM05D003632 ORTHO05D005497 1.8e-18 95.9 65 75.4
ATR0605G213 Amborella trichopoda HOM05D003632 ORTHO05D005497 2.3e-18 95.5 65 73.8
CiPaw.08G079400 Carya illinoinensis HOM05D003632 ORTHO05D005497 2.3e-18 95.5 71 70.4
Ciclev10000050m.g Citrus clementina HOM05D003632 ORTHO05D005497 2.3e-18 95.5 71 69.0
Duzib093G0207 Durio zibethinus HOM05D003632 ORTHO05D005497 2.3e-18 95.5 72 66.7
GSVIVG01013468001 Vitis vinifera HOM05D003632 ORTHO05D005497 2.3e-18 95.5 65 75.4
Cfa014172 Carpinus fangiana HOM05D003632 ORTHO05D005497 3.0e-18 95.1 71 69.0
Eucgr.F03633 Eucalyptus grandis HOM05D003632 ORTHO05D005497 3.9e-18 94.7 71 66.2
Gohir.A01G101300 Gossypium hirsutum HOM05D003632 ORTHO05D005497 3.9e-18 94.7 71 70.4
Gohir.D01G086200 Gossypium hirsutum HOM05D003632 ORTHO05D005497 3.9e-18 94.7 71 70.4
Gorai.002G111600 Gossypium raimondii HOM05D003632 ORTHO05D005497 3.9e-18 94.7 71 70.4
TPR.G38003 Trifolium pratense HOM05D003632 ORTHO05D005497 3.9e-18 94.7 65 73.8
CDE06G0366 Ceratophyllum demersum HOM05D003632 ORTHO05D005497 5.1e-18 94.4 65 73.8
CDE07G1872 Ceratophyllum demersum HOM05D003632 ORTHO05D005497 5.1e-18 94.4 65 73.8
FAN28G0698 Fragaria x ananassa HOM05D003632 ORTHO05D017240 5.1e-18 94.4 77 68.8
Lj5C162T4 Lonicera japonica HOM05D003632 ORTHO05D005497 5.1e-18 94.4 71 67.6
Cpa.g.sc36.89 Carica papaya HOM05D003632 ORTHO05D005497 6.7e-18 94.0 73 67.1
Dinv03487 Davidia involucrata HOM05D003632 ORTHO05D005497 6.7e-18 94.0 71 67.6
Lalb_Chr09g0320141 Lupinus albus HOM05D003632 ORTHO05D005497 8.7e-18 93.6 65 72.3
Nn6g31540 Nelumbo nucifera HOM05D003632 ORTHO05D005497 8.7e-18 93.6 65 73.8
PGR031G0531 Punica granatum HOM05D003632 ORTHO05D005497 8.7e-18 93.6 65 69.2
TWI38G0156 Tripterygium wilfordii HOM05D003632 ORTHO05D005497 8.7e-18 93.6 65 72.3
Oeu015114.3 Olea europaea HOM05D003632 ORTHO05D005497 1.1e-17 93.2 65 72.3
Phvul.002G040800 Phaseolus vulgaris HOM05D003632 ORTHO05D005497 1.1e-17 93.2 65 72.3
Psat2g189160 Pisum sativum HOM05D003632 ORTHO05D005497 1.1e-17 93.2 65 72.3
CSS0037547 Camellia sinensis var. sinensis HOM05D003632 ORTHO05D005497 1.5e-17 92.8 65 72.3
Ca_24435_v3 Cicer arietinum L. HOM05D003632 ORTHO05D005497 1.5e-17 92.8 65 72.3
Glyma.01G233300 Glycine max HOM05D003632 ORTHO05D005497 1.5e-17 92.8 65 72.3
Duzib248G0791 Durio zibethinus HOM05D003632 ORTHO05D005497 1.9e-17 92.4 72 65.3
Glyma.11G009500 Glycine max HOM05D003632 ORTHO05D005497 1.9e-17 92.4 65 72.3
LjContig00222g0019593 Lotus japonicus HOM05D003632 ORTHO05D005497 1.9e-17 92.4 71 67.6
Migut.D01195 Erythranthe guttata HOM05D003632 ORTHO05D005497 2.5e-17 92.0 80 62.5
HPP92_022034 Vanilla planifolia HOM05D003632 ORTHO05D005497 2.5e-17 92.0 61 77.0
unitig_0.g345 Utricularia gibba HOM05D003632 ORTHO05D005497 3.3e-17 91.7 80 65.0
Actinidia15538 Actinidia chinensis HOM05D003632 ORTHO05D005497 4.3e-17 91.3 71 64.8
AL8G19100 Arabidopsis lyrata HOM05D003632 ORTHO05D005497 4.3e-17 91.3 71 66.2
AT5G42390 Arabidopsis thaliana HOM05D003632 ORTHO05D005497 4.3e-17 91.3 71 66.2
arahy.Tifrunner.gnm1.ann1.LR79EL Arachis hypogaea HOM05D003632 ORTHO05D005497 5.7e-17 90.9 65 69.2
arahy.Tifrunner.gnm1.ann1.WPQ8T0 Arachis hypogaea HOM05D003632 ORTHO05D005497 5.7e-17 90.9 65 69.2
MSTRG.9366 Avicennia marina HOM05D003632 ORTHO05D005497 5.7e-17 90.9 61 73.8
ECA236G2986 Erigeron canadensis HOM05D003632 ORTHO05D005497 5.7e-17 90.9 71 66.2
Thhalv10003133m.g Eutrema salsugineum HOM05D003632 ORTHO05D005497 5.7e-17 90.9 65 70.8
Rhsim09G0100400 Rhododendron simsii HOM05D003632 ORTHO05D005497 5.7e-17 90.9 62 74.2
BcaB07g31079 Brassica carinata HOM05D003632 ORTHO05D005497 7.4e-17 90.5 71 66.2
BcaNung05247 Brassica carinata HOM05D003632 ORTHO05D005497 7.4e-17 90.5 71 66.2
Carub.0008s0677 Capsella rubella HOM05D003632 ORTHO05D005497 7.4e-17 90.5 71 66.2
Os06g0625400 Oryza sativa ssp. japonica HOM05D003632 ORTHO05D005497 7.4e-17 90.5 71 69.0
PSO017G4161 Papaver somniferum HOM05D003632 ORTHO05D005497 7.4e-17 90.5 71 63.4
Sp7g08050 Schrenkiella parvula HOM05D003632 ORTHO05D005497 7.4e-17 90.5 71 66.2
VMungo1215G1560 Vigna mungo HOM05D003632 ORTHO05D005497 7.4e-17 90.5 65 70.8
Zm00001eb275640 Zea mays HOM05D003632 ORTHO05D005497 7.4e-17 90.5 61 75.4
DCAR_003535 Daucus carota HOM05D003632 ORTHO05D005497 1.3e-16 89.7 71 64.8
Solyc03g118430.3 Solanum lycopersicum HOM05D003632 ORTHO05D005497 1.3e-16 89.7 61 75.4
Sopen03g037320 Solanum pennellii HOM05D003632 ORTHO05D005497 1.3e-16 89.7 61 75.4
PGSC0003DMG400014254 Solanum tuberosum HOM05D003632 ORTHO05D005497 1.3e-16 89.7 61 75.4
TWI63G1168 Tripterygium wilfordii HOM05D003632 ORTHO05D005497 1.3e-16 89.7 64 70.3
CAN.G2827.2 Capsicum annuum HOM05D003632 ORTHO05D005497 1.6e-16 89.4 61 73.8
CAN.G843.30 Capsicum annuum HOM05D003632 ORTHO05D005497 1.6e-16 89.4 61 73.8
HanXRQChr04g0119021 Helianthus annuus HOM05D003632 ORTHO05D005497 1.6e-16 89.4 65 67.7
vmacro15971 Vaccinium macrocarpon HOM05D003632 ORTHO05D005497 1.6e-16 89.4 61 73.8
Zm00001eb387800 Zea mays HOM05D003632 ORTHO05D005497 1.6e-16 89.4 65 69.2
EL10As5g23474 Beta vulgaris HOM05D003632 ORTHO05D005497 2.2e-16 89.0 71 66.2
BcaC04g21997 Brassica carinata HOM05D003632 ORTHO05D005497 2.2e-16 89.0 71 64.8
A09p19660 Brassica napus HOM05D003632 ORTHO05D005497 2.2e-16 89.0 71 64.8
C09p25020 Brassica napus HOM05D003632 ORTHO05D005497 2.2e-16 89.0 71 64.8
CARHR285100 Cardamine hirsuta HOM05D003632 ORTHO05D005497 2.2e-16 89.0 65 70.8
AUR62011864 Chenopodium quinoa HOM05D003632 ORTHO05D005497 2.2e-16 89.0 65 70.8
AUR62024707 Chenopodium quinoa HOM05D003632 ORTHO05D005497 2.2e-16 89.0 65 70.8
Rhsim02G0142400 Rhododendron simsii HOM05D003632 ORTHO05D005497 2.2e-16 89.0 61 73.8
Sc17g0000620 Simmondsia chinensis HOM05D003632 ORTHO05D005497 2.2e-16 89.0 86 59.3
Aa31LG9G12540 Aethionema arabicum HOM05D003632 ORTHO05D005497 2.8e-16 88.6 70 65.7
MELO3C008771.2 Cucumis melo HOM05D003632 ORTHO05D005497 2.8e-16 88.6 71 66.2
CsaV3_2G009400 Cucumis sativus L. HOM05D003632 ORTHO05D005497 2.8e-16 88.6 71 66.2
Nitab4.5_0002046g0120 Nicotiana tabacum HOM05D003632 ORTHO05D005497 2.8e-16 88.6 61 73.8
Nitab4.5_0002450g0120 Nicotiana tabacum HOM05D003632 ORTHO05D005497 2.8e-16 88.6 61 73.8
Peaxi162Scf00314g00434 Petunia axillaris HOM05D003632 ORTHO05D005497 2.8e-16 88.6 61 73.8
Ah.11g049790 Amaranthus hybridus HOM05D003632 ORTHO05D005497 3.7e-16 88.2 71 66.2
Lsat_1_v5_gn_7_31540 Lactuca sativa HOM05D003632 ORTHO05D005497 3.7e-16 88.2 71 62.0
HanXRQChr15g0481001 Helianthus annuus HOM05D003632 ORTHO05D005497 4.8e-16 87.8 65 66.2
PSO170G0589 Papaver somniferum HOM05D003632 ORTHO05D005497 4.8e-16 87.8 71 63.4
Hund02917 Selenicereus undatus HOM05D003632 ORTHO05D005497 8.2e-16 87.0 79 60.8
THA.LOC104806863 Tarenaya hassleriana HOM05D003632 ORTHO05D005497 8.2e-16 87.0 65 69.2
THA.LOC104813211 Tarenaya hassleriana HOM05D003632 ORTHO05D005497 8.2e-16 87.0 75 64.0
Cc04_g05970 Coffea canephora HOM05D003632 ORTHO05D005497 1.1e-15 86.7 61 73.8
PSO541G6510 Papaver somniferum HOM05D003632 ORTHO05D005497 1.1e-15 86.7 65 66.2
PSO675G5232 Papaver somniferum HOM05D003632 ORTHO05D005497 1.1e-15 86.7 65 66.2
SalBow1G1353 Salvia bowleyana HOM05D003632 ORTHO05D005497 1.1e-15 86.7 79 59.5
Sed0011503 Sechium edule HOM05D003632 ORTHO05D005497 1.1e-15 86.7 71 64.8
Aqoxy5G00932 Aquilegia oxysepala HOM05D003632 ORTHO05D005497 1.4e-15 86.3 61 72.1
Lalb_Chr16g0376561 Lupinus albus HOM05D003632 ORTHO05D005497 2.4e-15 85.5 61 72.1
SHI18575 Sapria himalayana HOM05D003632 ORTHO05D005497 2.4e-15 85.5 65 66.2
FAN10G3171 Fragaria x ananassa HOM05D003632 ORTHO05D005497 3.1e-15 85.1 47 91.5
Sabra14G0112500 Salix brachista HOM05D003632 ORTHO05D005497 2.0e-14 82.4 50 84.0
Hma1.2p1_0471F.1_g159520 Hydrangea macrophylla HOM05D003632 ORTHO05D005497 1.0e-13 80.1 65 67.7
Mapoly0022s0090 Marchantia polymorpha HOM05D003632 ORTHO05D005497 1.0e-13 80.1 71 59.2
Pp3c16_2100 Physcomitrium patens HOM05D003632 ORTHO05D005497 2.2e-13 79.0 71 57.7
MBI01_g09379_MAGBIO Magnolia biondii HOM05D003632 ORTHO05D005497 2.9e-13 78.6 66 65.2
AagrBONN_evm.TU.Sc2ySwM_117.2840 Anthoceros agrestis HOM05D003632 ORTHO05D005497 3.8e-13 78.2 61 65.6
FAN19G0570 Fragaria x ananassa HOM05D003632 ORTHO05D005497 5.0e-13 77.8 44 88.6
FAN06G0859 Fragaria x ananassa HOM05D003632 ORTHO05D046128 1.1e-12 76.6 59 67.8
BolC9t55396H Brassica oleracea HOM05D003632 ORTHO05D005497 3.2e-12 75.1 66 60.6
BraA09t37577Z Brassica rapa HOM05D003632 ORTHO05D005497 3.2e-12 75.1 66 60.6
CBR_g32249 Chara braunii HOM05D003632 ORTHO05D005497 1.2e-11 73.2 72 54.2
FvH4_1g28270 Fragaria vesca HOM05D003632 ORTHO05D005497 4.6e-11 71.2 40 87.5
FAN23G2090 Fragaria x ananassa HOM05D003632 ORTHO05D005497 8.8e-10 67.0 49 75.5
FAN27G3187 Fragaria x ananassa HOM05D003632 ORTHO05D005497 1.1e-09 66.6 41 87.8
FvH4_7g01860 Fragaria vesca HOM05D003632 ORTHO05D046128 7.4e-09 63.9 43 74.4
CAN.G1425.12 Capsicum annuum HOM05D003632 ORTHO05D005497 4.1e-07 58.2 42 69.0
Cre17.g723250 Chlamydomonas reinhardtii HOM05D003632 ORTHO05D005497 4.1e-07 58.2 65 50.8
FAN03G2152 Fragaria x ananassa HOM05D003632 ORTHO05D005497 4.1e-07 58.2 56 58.9
FvH4_7g01540 Fragaria vesca HOM05D003632 ORTHO05D005497 6.9e-07 57.4 36 80.6
Aa31LG2G1380 Aethionema arabicum HOM05D003632 ORTHO05D017240 1.5e-06 56.2 47 59.6
PRCOL_00001043 Prasinoderma coloniale HOM05D003632 ORTHO05D005497 1.5e-06 56.2 61 45.9


User provided reference genes

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