Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN06G3446 Fragaria x ananassa HOM05D005720 ORTHO05D006984 0.0e+00 1962.2 996 100.0
FAN06G1427 Fragaria x ananassa HOM05D005720 ORTHO05D006984 0.0e+00 1938.3 999 98.7
FAN01G1865 Fragaria x ananassa HOM05D005720 ORTHO05D006984 0.0e+00 1922.1 1000 98.0
FvH4_7g30790 Fragaria vesca HOM05D005720 ORTHO05D006984 0.0e+00 1907.5 1000 97.6
FAN03G0014 Fragaria x ananassa HOM05D005720 ORTHO05D006984 0.0e+00 1792.7 993 92.2
FAN10G0387 Fragaria x ananassa HOM05D005720 ORTHO05D006984 0.0e+00 1688.3 972 89.8
FAN10G2558 Fragaria x ananassa HOM05D005720 ORTHO05D006984 0.0e+00 1451.4 814 91.2
RcHm_v2.0_Chr1g0379731 Rosa chinensis HOM05D005720 ORTHO05D006984 0.0e+00 1405.2 884 81.6
Prupe.2G305400 Prunus persica HOM05D005720 ORTHO05D006984 0.0e+00 1145.6 1018 62.5
MD07G1283200 Malus domestica HOM05D005720 ORTHO05D006984 0.0e+00 1124.0 1022 61.9
MD01G1213400 Malus domestica HOM05D005720 ORTHO05D006984 0.0e+00 1083.9 1022 60.8
QL09p011597 Quercus lobata HOM05D005720 ORTHO05D006984 5.9e-282 974.5 1040 55.4
Cfa016346 Carpinus fangiana HOM05D005720 ORTHO05D006984 3.8e-281 971.8 1033 56.0
CiPaw.06G006200 Carya illinoinensis HOM05D005720 ORTHO05D006984 7.5e-277 957.6 1022 54.8
MD01G1213200 Malus domestica HOM05D005720 ORTHO05D006984 6.6e-257 891.3 882 58.5
TWI39G1277 Tripterygium wilfordii HOM05D005720 ORTHO05D006984 1.2e-247 860.5 1021 49.4
Manes.06G155900 Manihot esculenta HOM05D005720 ORTHO05D006984 6.9e-246 854.7 1026 51.5
Potri.012G033800 Populus trichocarpa HOM05D005720 ORTHO05D006984 4.2e-243 845.5 1015 51.0
Haze_00092 Corylus avellana HOM05D005720 ORTHO05D006984 3.0e-241 839.3 1035 51.5
Thecc.03G190400 Theobroma cacao HOM05D005720 ORTHO05D006984 1.5e-240 837.0 1036 50.2
GSVIVG01028746001 Vitis vinifera HOM05D005720 ORTHO05D006984 1.4e-235 820.5 1016 48.6
Sabra12G0022900 Salix brachista HOM05D005720 ORTHO05D006984 6.0e-234 815.1 1015 50.4
COL.COLO4_24780 Corchorus olitorius HOM05D005720 ORTHO05D006984 6.0e-226 788.5 1076 47.1
Duzib084G1243 Durio zibethinus HOM05D005720 ORTHO05D006984 2.0e-221 773.5 1029 48.4
Gohir.A09G183200 Gossypium hirsutum HOM05D005720 ORTHO05D006984 7.6e-221 771.5 1031 48.2
Dinv28352 Davidia involucrata HOM05D005720 ORTHO05D006984 1.0e-220 771.2 1030 48.2
Gohir.D09G177900 Gossypium hirsutum HOM05D005720 ORTHO05D006984 1.6e-218 763.8 1031 47.7
Gorai.006G200000 Gossypium raimondii HOM05D005720 ORTHO05D006984 3.8e-212 742.7 1025 47.1
CsaV3_4G002370 Cucumis sativus L. HOM05D005720 ORTHO05D006984 2.0e-197 693.7 1018 43.6
Cpa.g.sc3.32 Carica papaya HOM05D005720 ORTHO05D006984 3.5e-197 693.0 1022 43.4
Hma1.2p1_0142F.1_g064130 Hydrangea macrophylla HOM05D005720 ORTHO05D006984 5.0e-196 689.1 1020 44.5
MELO3C017804.2 Cucumis melo HOM05D005720 ORTHO05D006984 1.1e-195 688.0 975 44.2
arahy.Tifrunner.gnm1.ann1.35A5BC Arachis hypogaea HOM05D005720 ORTHO05D006984 3.2e-195 686.4 1069 43.5
Nn1g01775 Nelumbo nucifera HOM05D005720 ORTHO05D006984 9.4e-195 684.9 1023 44.4
arahy.Tifrunner.gnm1.ann1.YA4Y9S Arachis hypogaea HOM05D005720 ORTHO05D006984 8.0e-194 681.8 1069 43.5
Eucgr.K00315 Eucalyptus grandis HOM05D005720 ORTHO05D006984 3.3e-192 676.4 1039 43.8
AUR62031469 Chenopodium quinoa HOM05D005720 ORTHO05D006984 2.8e-191 673.3 1030 43.1
Ca_27881_v3 Cicer arietinum L. HOM05D005720 ORTHO05D006984 2.8e-191 673.3 1025 44.7
Glyma.16G069100 Glycine max HOM05D005720 ORTHO05D006984 6.1e-186 655.6 1026 43.9
EL10Ac3g05366 Beta vulgaris HOM05D005720 ORTHO05D006984 6.7e-185 652.1 1031 42.7
Hund11695 Selenicereus undatus HOM05D005720 ORTHO05D006984 5.7e-184 649.0 1028 41.7
Lalb_Chr06g0161451 Lupinus albus HOM05D005720 ORTHO05D006984 3.7e-183 646.4 1015 42.8
TPR.G16464 Trifolium pratense HOM05D005720 ORTHO05D006984 1.0e-180 638.3 1016 43.7
Rhsim03G0197100 Rhododendron simsii HOM05D005720 ORTHO05D006984 8.5e-180 635.2 1020 43.2
MBI06_g04292_MAGBIO Magnolia biondii HOM05D005720 ORTHO05D006984 4.7e-178 629.4 1049 43.2
Lj3g0007394 Lotus japonicus HOM05D005720 ORTHO05D006984 8.8e-177 625.2 1021 42.5
TAR636G3648 Trochodendron aralioides HOM05D005720 ORTHO05D006984 1.5e-176 624.4 801 48.1
Medtr8g058270 Medicago truncatula HOM05D005720 ORTHO05D006984 2.0e-176 624.0 1042 42.5
ClCG07G011830 Citrullus lanatus HOM05D005720 ORTHO05D006984 1.3e-175 621.3 1030 41.7
Oeu037117.2 Olea europaea HOM05D005720 ORTHO05D006984 8.3e-175 618.6 1014 41.2
TAR629G0723 Trochodendron aralioides HOM05D005720 ORTHO05D006984 2.8e-170 603.6 770 47.7
Sc13g0009450 Simmondsia chinensis HOM05D005720 ORTHO05D006984 1.4e-169 601.3 1020 40.1
Actinidia08611 Actinidia chinensis HOM05D005720 ORTHO05D006984 8.9e-169 598.6 910 43.4
PSO384G4812 Papaver somniferum HOM05D005720 ORTHO05D006984 8.9e-169 598.6 1011 41.5
THA.LOC104825125 Tarenaya hassleriana HOM05D005720 ORTHO05D006984 2.8e-167 593.6 1017 39.6
Aqoxy7G00210 Aquilegia oxysepala HOM05D005720 ORTHO05D006984 1.1e-166 591.7 1027 41.6
Cc02_g02050 Coffea canephora HOM05D005720 ORTHO05D006984 1.4e-166 591.3 1017 41.0
PSO135G0324 Papaver somniferum HOM05D005720 ORTHO05D006984 3.1e-166 590.1 1015 41.3
Ah.07g206170 Amaranthus hybridus HOM05D005720 ORTHO05D006984 2.5e-163 580.5 1033 40.3
AL8G27450 Arabidopsis lyrata HOM05D005720 ORTHO05D006984 4.7e-162 576.2 1016 39.2
Aa31LG3G9180 Aethionema arabicum HOM05D005720 ORTHO05D006984 1.2e-160 571.6 1017 38.8
Thhalv10012590m.g Eutrema salsugineum HOM05D005720 ORTHO05D006984 2.7e-157 560.5 1016 38.6
AT5G52950 Arabidopsis thaliana HOM05D005720 ORTHO05D006984 4.6e-157 559.7 1018 38.9
AUR62021063 Chenopodium quinoa HOM05D005720 ORTHO05D006984 3.9e-156 556.6 1029 38.9
HanXRQChr11g0353671 Helianthus annuus HOM05D005720 ORTHO05D006984 1.9e-155 554.3 1010 39.9
HanXRQChr01g0031161 Helianthus annuus HOM05D005720 ORTHO05D006984 2.5e-155 553.9 1007 40.0
DCAR_010640 Daucus carota HOM05D005720 ORTHO05D006984 3.3e-155 553.5 1009 39.9
Peaxi162Scf00904g00464 Petunia axillaris HOM05D005720 ORTHO05D006984 1.6e-154 551.2 1013 39.7
Solyc03g007550.4 Solanum lycopersicum HOM05D005720 ORTHO05D006984 6.2e-154 549.3 997 40.1
CARHR265920 Cardamine hirsuta HOM05D005720 ORTHO05D006984 1.4e-153 548.1 1012 38.0
MSTRG.27056 Avicennia marina HOM05D005720 ORTHO05D006984 1.2e-152 545.0 1021 38.7
Carub.0008s1313 Capsella rubella HOM05D005720 ORTHO05D006984 2.0e-152 544.3 1017 38.2
VMungo1127G0215 Vigna mungo HOM05D005720 ORTHO05D006984 5.8e-152 542.7 1010 40.6
Sopen03g003510 Solanum pennellii HOM05D005720 ORTHO05D006984 1.3e-151 541.6 1002 39.8
Nitab4.5_0000472g0110 Nicotiana tabacum HOM05D005720 ORTHO05D006984 2.9e-151 540.4 1022 39.2
Sp6g15110 Schrenkiella parvula HOM05D005720 ORTHO05D006984 6.0e-149 532.7 1011 37.0
SalBow4G2908 Salvia bowleyana HOM05D005720 ORTHO05D006984 1.0e-148 531.9 1015 40.2
BraA02t06213Z Brassica rapa HOM05D005720 ORTHO05D006984 1.5e-147 528.1 1014 37.4
Psat4g140280 Pisum sativum HOM05D005720 ORTHO05D006984 1.9e-147 527.7 890 42.2
SalBow4G2744 Salvia bowleyana HOM05D005720 ORTHO05D006984 4.3e-147 526.6 1004 39.7
BolC2t08045H Brassica oleracea HOM05D005720 ORTHO05D006984 1.2e-146 525.0 1018 37.1
ECA248G2416 Erigeron canadensis HOM05D005720 ORTHO05D006984 1.2e-146 525.0 1012 38.0
CAN.G108.10 Capsicum annuum HOM05D005720 ORTHO05D006984 1.6e-146 524.6 1011 38.6
C09p42670 Brassica napus HOM05D005720 ORTHO05D006984 4.7e-146 523.1 1016 37.4
BolC9t57143H Brassica oleracea HOM05D005720 ORTHO05D006984 4.7e-146 523.1 1016 37.4
C02p19150 Brassica napus HOM05D005720 ORTHO05D006984 1.4e-145 521.5 1018 37.0
A02p11480 Brassica napus HOM05D005720 ORTHO05D006984 1.8e-145 521.2 1016 37.0
Lsat_1_v5_gn_1_45000 Lactuca sativa HOM05D005720 ORTHO05D006984 8.9e-145 518.8 1015 38.7
BcaC03g14481 Brassica carinata HOM05D005720 ORTHO05D006984 3.4e-144 516.9 1028 36.9
Migut.F00255 Erythranthe guttata HOM05D005720 ORTHO05D006984 1.3e-143 515.0 1010 38.9
SHI10811 Sapria himalayana HOM05D005720 ORTHO05D006984 3.6e-130 470.3 909 37.6
PGR142G3228 Punica granatum HOM05D005720 ORTHO05D006984 9.9e-128 462.2 1017 36.9
SGA_v2.0_scaffold192G40596 Striga asiatica HOM05D005720 ORTHO05D006984 2.8e-122 444.1 965 35.3
Hma1.2p1_1891F.1_g306670 Hydrangea macrophylla HOM05D005720 ORTHO05D006984 6.9e-121 439.5 929 36.8
Nitab4.5_0001331g0120 Nicotiana tabacum HOM05D005720 ORTHO05D006984 1.3e-119 435.3 1004 36.5
Phvul.011G167400 Phaseolus vulgaris HOM05D005720 ORTHO05D006984 6.0e-117 426.4 675 43.1
Hma1.2p1_0142F.1_g064120 Hydrangea macrophylla HOM05D005720 ORTHO05D006984 7.6e-104 382.9 470 47.4
HPP92_005221 Vanilla planifolia HOM05D005720 ORTHO05D006984 2.8e-98 364.4 977 32.1
unitig_747.g21855 Utricularia gibba HOM05D000121 ORTHO05D000102 1.8e-97 361.7 1057 31.5
CDE02G2607 Ceratophyllum demersum HOM05D005720 ORTHO05D006984 1.5e-96 358.6 894 32.4
vmacro06588 Vaccinium macrocarpon HOM05D005720 ORTHO05D006984 5.5e-94 350.1 630 38.3
ATR1131G019 Amborella trichopoda HOM05D005720 ORTHO05D006984 1.2e-93 349.0 1027 32.7
CSS0019438 Camellia sinensis var. sinensis HOM05D005720 ORTHO05D006984 2.7e-85 321.2 477 46.5
BcaB08g35658 Brassica carinata HOM05D005720 ORTHO05D006984 2.2e-82 311.6 616 34.9
Sed0011275 Sechium edule HOM05D005720 ORTHO05D006984 1.1e-81 309.3 360 51.7
Zm00001eb119640 Zea mays HOM05D005720 ORTHO05D006984 4.1e-81 307.4 1061 28.9
Lj3A914T79 Lonicera japonica HOM05D005720 ORTHO05D006984 2.0e-80 305.1 617 39.5
CSS0038820 Camellia sinensis var. sinensis HOM05D005720 ORTHO05D006984 1.2e-77 295.8 481 44.7
Psat0s2250g0040 Pisum sativum HOM05D005720 ORTHO05D006984 5.2e-76 290.4 475 44.8
SEGI_30168 Sequoiadendron giganteum HOM05D005720 ORTHO05D006984 6.7e-76 290.0 1086 28.0
BcaB05g21993 Brassica carinata HOM05D005720 ORTHO05D006984 3.7e-74 284.3 1001 27.9
Lj3P914T60 Lonicera japonica HOM05D005720 ORTHO05D006984 4.0e-68 264.2 336 47.0
Hma1.2p1_0142F.1_g064140 Hydrangea macrophylla HOM05D005720 ORTHO05D006984 1.5e-67 262.3 373 46.9
HPP92_005214 Vanilla planifolia HOM05D005720 ORTHO05D006984 1.0e-60 239.6 959 27.2
BraA10t43127Z Brassica rapa HOM05D005720 ORTHO05D006984 5.2e-52 210.7 307 44.0
TAR629G3278 Trochodendron aralioides HOM05D005720 ORTHO05D006984 2.2e-50 205.3 252 52.0
vmacro06589 Vaccinium macrocarpon HOM05D005720 ORTHO05D006984 3.3e-46 191.4 317 43.5
MBI16_g03131_MAGBIO Magnolia biondii HOM05D005720 ORTHO05D006984 1.3e-42 179.5 429 35.4
PGSC0003DMG400006595 Solanum tuberosum HOM05D005720 ORTHO05D006984 6.4e-42 177.2 249 47.8
Os01g0222300 Oryza sativa ssp. japonica HOM05D005720 ORTHO05D006984 4.1e-33 147.9 367 34.9
SEGI_32546 Sequoiadendron giganteum HOM05D005720 ORTHO05D006984 4.3e-30 137.9 1037 23.9
RcHm_v2.0_Chr1g0379741 Rosa chinensis HOM05D005720 ORTHO05D006984 1.2e-27 129.8 82 86.6
RcHm_v2.0_Chr1g0313941 Rosa chinensis HOM05D003970 ORTHO05D004615 4.3e-22 111.3 158 45.6
SHI10812 Sapria himalayana HOM05D005720 ORTHO05D006984 3.6e-21 108.2 160 46.9
MSTRG.8687 Avicennia marina HOM05D005720 ORTHO05D006984 4.4e-11 74.7 135 41.5
MBI16_g03132_MAGBIO Magnolia biondii HOM05D005720 ORTHO05D006984 3.8e-10 71.6 209 34.0
Lju188P3T29 Lonicera japonica HOM05D005720 ORTHO05D006984 4.6e-08 64.7 86 52.3
Mapoly0039s0001 Marchantia polymorpha HOM05D005720 ORTHO05D006984 1.0e-07 63.5 214 26.6
RcHm_v2.0_Chr1g0379811 Rosa chinensis HOM05D000121 ORTHO05D013415 5.1e-07 61.2 52 69.2


User provided reference genes

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