Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN06G3350 Fragaria x ananassa HOM05D006127 ORTHO05D007465 8.4e-304 1046.2 521 100.0
FAN06G1782 Fragaria x ananassa HOM05D006127 ORTHO05D007465 1.3e-301 1038.9 521 99.2
FAN03G3352 Fragaria x ananassa HOM05D006127 ORTHO05D007465 2.4e-295 1018.1 521 97.1
FAN03G2078 Fragaria x ananassa HOM05D006127 ORTHO05D007465 7.1e-295 1016.5 519 97.1
FAN10G2357 Fragaria x ananassa HOM05D006127 ORTHO05D007465 3.9e-293 1010.7 522 96.9
FAN10G0315 Fragaria x ananassa HOM05D006127 ORTHO05D007465 1.9e-292 1008.4 522 96.7
RcHm_v2.0_Chr1g0378611 Rosa chinensis HOM05D006127 ORTHO05D007465 9.1e-258 893.3 509 87.6
Prupe.2G302400 Prunus persica HOM05D006127 ORTHO05D007465 6.6e-216 754.2 535 74.2
MD07G1280200 Malus domestica HOM05D006127 ORTHO05D007465 1.8e-213 746.1 539 72.7
MD01G1210100 Malus domestica HOM05D006127 ORTHO05D007465 2.9e-203 712.2 433 80.6
FvH4_7g30450 Fragaria vesca HOM05D006127 ORTHO05D007465 1.1e-199 700.3 354 98.9
Cfa016302 Carpinus fangiana HOM05D006127 ORTHO05D007465 9.3e-194 680.6 529 68.4
QL09p012458 Quercus lobata HOM05D006127 ORTHO05D007465 2.5e-191 672.5 540 67.2
Ciclev10004691m.g Citrus clementina HOM05D006127 ORTHO05D007465 1.9e-186 656.4 541 64.5
CiPaw.06G004100 Carya illinoinensis HOM05D006127 ORTHO05D007465 3.0e-184 649.0 524 66.2
Gorai.003G069400 Gossypium raimondii HOM05D006127 ORTHO05D007465 5.6e-183 644.8 542 63.1
Gohir.D11G229300 Gossypium hirsutum HOM05D006127 ORTHO05D007465 1.8e-181 639.8 542 62.5
Sabra17G0124200 Salix brachista HOM05D006127 ORTHO05D007465 4.0e-181 638.6 529 64.3
Atru.chr1.338 Acer truncatum HOM05D006127 ORTHO05D007465 2.6e-180 636.0 529 63.7
Dinv35267 Davidia involucrata HOM05D006127 ORTHO05D007465 2.6e-180 636.0 468 69.7
Gohir.A11G225200 Gossypium hirsutum HOM05D006127 ORTHO05D007465 3.8e-179 632.1 543 62.1
Potri.017G148900 Populus trichocarpa HOM05D006127 ORTHO05D007465 1.9e-178 629.8 529 64.1
Thecc.03G186000 Theobroma cacao HOM05D006127 ORTHO05D007465 1.9e-178 629.8 547 62.7
COL.COLO4_30292 Corchorus olitorius HOM05D006127 ORTHO05D007465 1.8e-176 623.2 548 62.2
Potri.004G072100 Populus trichocarpa HOM05D006127 ORTHO05D007465 1.8e-176 623.2 513 64.7
Manes.06G153500 Manihot esculenta HOM05D006127 ORTHO05D007465 5.1e-176 621.7 552 62.1
CSS0002355 Camellia sinensis var. sinensis HOM05D006127 ORTHO05D007465 6.7e-176 621.3 523 64.2
Lj2g0027649 Lotus japonicus HOM05D006127 ORTHO05D007465 6.7e-176 621.3 535 62.4
CiPaw.05G261300 Carya illinoinensis HOM05D006127 ORTHO05D007465 8.7e-176 620.9 427 72.8
Eucgr.A02719 Eucalyptus grandis HOM05D006127 ORTHO05D007465 3.1e-173 612.5 483 65.8
Phvul.004G105900 Phaseolus vulgaris HOM05D006127 ORTHO05D007465 4.0e-173 612.1 505 64.4
CSS0021566 Camellia sinensis var. sinensis HOM05D006127 ORTHO05D007465 5.3e-173 611.7 540 63.0
Lalb_Chr01g0009501 Lupinus albus HOM05D006127 ORTHO05D007465 9.0e-173 610.9 507 63.3
TWI23G0320 Tripterygium wilfordii HOM05D006127 ORTHO05D007465 9.0e-173 610.9 505 63.6
PGR044G2596 Punica granatum HOM05D006127 ORTHO05D007465 1.5e-172 610.1 518 63.5
Ca_26803_v3 Cicer arietinum L. HOM05D006127 ORTHO05D007465 3.8e-171 605.5 511 64.4
Haze_00059 Corylus avellana HOM05D006127 ORTHO05D007465 1.1e-170 604.0 529 63.7
Glyma.09G129300 Glycine max HOM05D006127 ORTHO05D007465 1.9e-170 603.2 506 64.2
TAR374G0777 Trochodendron aralioides HOM05D006127 ORTHO05D007465 1.9e-170 603.2 472 66.5
Nitab4.5_0000472g0230 Nicotiana tabacum HOM05D006127 ORTHO05D007465 1.2e-169 600.5 454 67.8
PGSC0003DMG400009503 Solanum tuberosum HOM05D006127 ORTHO05D007465 1.6e-169 600.1 458 67.9
THA.LOC104818243 Tarenaya hassleriana HOM05D006127 ORTHO05D007465 3.5e-169 599.0 466 65.0
Actinidia34165 Actinidia chinensis HOM05D006127 ORTHO05D007465 1.0e-168 597.4 482 66.2
Solyc03g007620.3 Solanum lycopersicum HOM05D006127 ORTHO05D007465 2.3e-168 596.3 458 67.2
Aa31LG11G990 Aethionema arabicum HOM05D006127 ORTHO05D007465 1.1e-167 594.0 520 62.1
Sopen03g003570 Solanum pennellii HOM05D006127 ORTHO05D007465 1.1e-167 594.0 458 67.0
CsaV3_5G001020 Cucumis sativus L. HOM05D006127 ORTHO05D007465 2.5e-167 592.8 523 59.7
Peaxi162Scf00444g00314 Petunia axillaris HOM05D006127 ORTHO05D007465 1.6e-166 590.1 456 68.2
Medtr6g053110 Medicago truncatula HOM05D006127 ORTHO05D007465 2.2e-166 589.7 511 63.6
ClCG01G000890 Citrullus lanatus HOM05D006127 ORTHO05D007465 6.3e-166 588.2 460 66.1
Dinv28380 Davidia involucrata HOM05D006127 ORTHO05D007465 6.3e-166 588.2 465 67.1
Sabra04G0047500 Salix brachista HOM05D006127 ORTHO05D007465 8.2e-166 587.8 587 56.7
Carub.0008s2341 Capsella rubella HOM05D006127 ORTHO05D007465 1.4e-165 587.0 510 61.6
CAN.G236.3 Capsicum annuum HOM05D006127 ORTHO05D007465 2.4e-165 586.3 456 66.7
Nitab4.5_0001331g0020 Nicotiana tabacum HOM05D006127 ORTHO05D007465 2.4e-165 586.3 463 66.1
Thhalv10003967m.g Eutrema salsugineum HOM05D006127 ORTHO05D007465 4.1e-165 585.5 516 61.4
AT5G62650 Arabidopsis thaliana HOM05D006127 ORTHO05D007465 6.9e-165 584.7 515 61.6
AL8G39630 Arabidopsis lyrata HOM05D006127 ORTHO05D007465 1.5e-164 583.6 517 61.1
MSTRG.8699 Avicennia marina HOM05D006127 ORTHO05D007465 2.2e-163 579.7 528 58.7
Sp2g25830 Schrenkiella parvula HOM05D006127 ORTHO05D007465 3.8e-163 578.9 517 61.5
Aqoxy7G00200 Aquilegia oxysepala HOM05D006127 ORTHO05D007465 6.5e-163 578.2 458 66.4
CARHR276460 Cardamine hirsuta HOM05D006127 ORTHO05D007465 1.4e-162 577.0 512 60.5
MELO3C005842.2 Cucumis melo HOM05D006127 ORTHO05D007465 1.4e-162 577.0 525 59.0
HanXRQChr00c0486g0575011 Helianthus annuus HOM05D006127 ORTHO05D007465 1.9e-162 576.6 468 62.2
arahy.Tifrunner.gnm1.ann1.AR9FJK Arachis hypogaea HOM05D006127 ORTHO05D007465 5.5e-162 575.1 535 60.0
Lsat_1_v5_gn_9_56840 Lactuca sativa HOM05D006127 ORTHO05D007465 7.2e-162 574.7 456 64.5
arahy.Tifrunner.gnm1.ann1.HXNP43 Arachis hypogaea HOM05D006127 ORTHO05D007465 1.2e-161 573.9 526 60.8
Sc13g0009280 Simmondsia chinensis HOM05D006127 ORTHO05D007465 2.7e-161 572.8 492 61.8
ECA232G4568 Erigeron canadensis HOM05D006127 ORTHO05D007465 1.4e-160 570.5 467 63.0
Gohir.D09G177600 Gossypium hirsutum HOM05D006127 ORTHO05D007465 3.0e-160 569.3 524 60.1
Gorai.006G199600 Gossypium raimondii HOM05D006127 ORTHO05D007465 3.0e-160 569.3 524 60.1
Cc02_g02250 Coffea canephora HOM05D006127 ORTHO05D007465 5.1e-160 568.5 436 66.5
Sed0008008 Sechium edule HOM05D006127 ORTHO05D007465 6.7e-160 568.2 478 61.5
Migut.F00277 Erythranthe guttata HOM05D006127 ORTHO05D007465 9.7e-159 564.3 540 57.2
Glyma.16G177100 Glycine max HOM05D006127 ORTHO05D007465 1.3e-158 563.9 499 60.9
BraA06t25889Z Brassica rapa HOM05D006127 ORTHO05D007465 3.7e-158 562.4 511 60.1
A06p29390 Brassica napus HOM05D006127 ORTHO05D007465 4.8e-158 562.0 512 60.0
BcaC01g02503 Brassica carinata HOM05D006127 ORTHO05D007465 8.2e-158 561.2 511 60.1
Lj1A1007G54 Lonicera japonica HOM05D006127 ORTHO05D007465 1.1e-157 560.8 477 62.3
Gohir.A09G182900 Gossypium hirsutum HOM05D006127 ORTHO05D007465 1.4e-157 560.5 519 59.3
C03p64120 Brassica napus HOM05D006127 ORTHO05D007465 1.5e-156 557.0 465 63.2
PSO266G0017 Papaver somniferum HOM05D006127 ORTHO05D007465 4.5e-156 555.4 459 61.7
BolC3t18667H Brassica oleracea HOM05D006127 ORTHO05D007465 5.9e-156 555.1 511 59.5
PSO478G4852 Papaver somniferum HOM05D006127 ORTHO05D007465 5.9e-156 555.1 465 62.2
GSVIVG01028824001 Vitis vinifera HOM05D006127 ORTHO05D007465 7.9e-153 544.7 425 64.9
EL10Ac3g05405 Beta vulgaris HOM05D006127 ORTHO05D007465 2.3e-152 543.1 464 62.9
BcaB02g09667 Brassica carinata HOM05D006127 ORTHO05D007465 3.0e-152 542.7 511 58.5
DCAR_008898 Daucus carota HOM05D006127 ORTHO05D007465 1.5e-151 540.4 535 55.7
HanXRQChr15g0494171 Helianthus annuus HOM05D006127 ORTHO05D007465 2.0e-151 540.0 518 57.1
Cpa.g.sc107.127 Carica papaya HOM05D006127 ORTHO05D007465 9.7e-151 537.7 454 63.2
AUR62031438 Chenopodium quinoa HOM05D006127 ORTHO05D007465 9.7e-151 537.7 445 63.6
Oeu003330.1 Olea europaea HOM05D006127 ORTHO05D007465 1.8e-149 533.5 412 65.5
Nn6g32416 Nelumbo nucifera HOM05D006127 ORTHO05D007465 7.0e-149 531.6 501 57.7
Ah.07g206460 Amaranthus hybridus HOM05D006127 ORTHO05D007465 2.9e-147 526.2 548 53.8
SGA_v2.0_scaffold60G21123 Striga asiatica HOM05D006127 ORTHO05D007465 5.0e-147 525.4 524 55.3
unitig_747.g21859 Utricularia gibba HOM05D006127 ORTHO05D007465 3.2e-146 522.7 515 56.1
ATR0721G168 Amborella trichopoda HOM05D006127 ORTHO05D007465 3.2e-138 496.1 499 54.3
Hund04798 Selenicereus undatus HOM05D006127 ORTHO05D007465 8.0e-137 491.5 645 47.3
TPR.G9177 Trifolium pratense HOM05D006127 ORTHO05D007465 7.5e-135 485.0 331 74.6
CDE04G3725 Ceratophyllum demersum HOM05D006127 ORTHO05D007465 9.7e-135 484.6 500 53.2
vmacro06616 Vaccinium macrocarpon HOM05D006127 ORTHO05D007465 1.3e-134 484.2 497 55.5
Psat0s2186g0040 Pisum sativum HOM05D006127 ORTHO05D007465 2.8e-134 483.0 341 72.4
Zm00001eb119480 Zea mays HOM05D006127 ORTHO05D007465 1.7e-131 473.8 515 51.7
Rhsim03G0192200 Rhododendron simsii HOM05D006127 ORTHO05D007465 8.5e-131 471.5 524 53.1
AUR62021102 Chenopodium quinoa HOM05D006127 ORTHO05D007465 1.5e-130 470.7 447 58.6
Ah.13g069260 Amaranthus hybridus HOM05D006127 ORTHO05D007465 1.8e-128 463.8 405 60.5
FAN01G1207 Fragaria x ananassa HOM05D006127 ORTHO05D007465 2.3e-128 463.4 231 100.0
HPP92_008801 Vanilla planifolia HOM05D006127 ORTHO05D007465 1.3e-123 447.6 514 50.2
VMungo0464G0768 Vigna mungo HOM05D006127 ORTHO05D007465 2.0e-103 380.6 285 69.1
Oeu027861.1 Olea europaea HOM05D006127 ORTHO05D007465 6.4e-102 375.6 441 48.5
BcaB02g09671 Brassica carinata HOM05D006127 ORTHO05D007465 1.1e-98 364.8 470 47.7
HPP92_005266 Vanilla planifolia HOM05D006127 ORTHO05D007465 1.4e-96 357.8 367 52.0
SGA_v2.0_scaffold192G40622 Striga asiatica HOM05D006127 ORTHO05D007465 4.0e-88 329.7 260 64.6
Nn1g01683 Nelumbo nucifera HOM05D006127 ORTHO05D007465 3.8e-86 323.2 515 41.0
CDE03G0317 Ceratophyllum demersum HOM05D006127 ORTHO05D007465 2.4e-85 320.5 277 57.0
Mapoly0009s0032 Marchantia polymorpha HOM05D006127 ORTHO05D007465 2.2e-70 270.8 513 36.3
AagrBONN_evm.TU.Sc2ySwM_368.2100 Anthoceros agrestis HOM05D006127 ORTHO05D007465 6.0e-68 262.7 359 41.8
Os01g0225300 Oryza sativa ssp. japonica HOM05D006127 ORTHO05D007465 2.8e-65 253.8 290 47.6
Pp3c17_22580 Physcomitrium patens HOM05D006127 ORTHO05D007465 8.7e-59 232.3 526 31.4
arahy.Tifrunner.gnm1.ann1.KML1I1 Arachis hypogaea HOM05D006127 ORTHO05D007465 1.4e-45 188.3 245 46.1
SEGI_03634 Sequoiadendron giganteum HOM05D006127 ORTHO05D007465 1.6e-36 158.3 132 56.8
SMO266G0103 Selaginella moellendorffii HOM05D006127 ORTHO05D007465 3.3e-34 150.6 194 37.1
AL8G39600 Arabidopsis lyrata HOM05D000171 ORTHO05D000101 4.1e-32 143.7 95 72.6
Cfa002216 Carpinus fangiana HOM05D006127 ORTHO05D007465 3.6e-28 130.6 233 39.5
TPR.G27774 Trifolium pratense HOM05D006127 ORTHO05D007465 3.3e-26 124.0 163 48.5
TPR.G9175 Trifolium pratense HOM05D006127 ORTHO05D007465 1.3e-25 122.1 80 71.2
COL.COLO4_36023 Corchorus olitorius HOM05D006127 ORTHO05D161883 6.5e-22 109.8 63 79.4
SEGI_25179 Sequoiadendron giganteum HOM05D006127 ORTHO05D007465 1.5e-13 82.0 83 48.2
Ah.13g069250 Amaranthus hybridus HOM05D006127 ORTHO05D007465 4.2e-13 80.5 116 47.4
Aqoxy1G04253 Aquilegia oxysepala HOM05D006127 ORTHO05D078839 5.0e-06 57.0 49 63.3


User provided reference genes

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