Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN06G3343 Fragaria x ananassa HOM05D004065 ORTHO05D004806 0.0e+00 2330.4 1220 100.0
FAN06G3757 Fragaria x ananassa HOM05D004065 ORTHO05D004806 0.0e+00 2312.3 1220 99.5
FAN01G1867 Fragaria x ananassa HOM05D004065 ORTHO05D004806 0.0e+00 2305.0 1220 99.3
FAN10G0299 Fragaria x ananassa HOM05D004065 ORTHO05D004806 0.0e+00 2278.4 1220 98.1
FvH4_7g21970 Fragaria vesca HOM05D004065 ORTHO05D004806 0.0e+00 2231.1 1220 97.0
FAN03G1397 Fragaria x ananassa HOM05D004065 ORTHO05D004806 0.0e+00 2156.3 1220 94.1
RcHm_v2.0_Chr1g0366301 Rosa chinensis HOM05D004065 ORTHO05D004806 0.0e+00 1994.5 1224 87.7
Prupe.2G231600 Prunus persica HOM05D004065 ORTHO05D004806 0.0e+00 1805.4 1231 79.9
MD07G1194200 Malus domestica HOM05D004065 ORTHO05D004806 0.0e+00 1799.6 1161 81.9
MD01G1124000 Malus domestica HOM05D004065 ORTHO05D004806 0.0e+00 1777.3 1175 80.3
CANSAT56G4002 Cannabis sativa HOM05D004065 ORTHO05D004806 0.0e+00 1610.9 1237 70.3
Cfa001505 Carpinus fangiana HOM05D004065 ORTHO05D004806 0.0e+00 1604.0 1233 70.1
Thecc.10G046900 Theobroma cacao HOM05D004065 ORTHO05D004806 0.0e+00 1587.4 1242 68.0
Atru.chr12.508 Acer truncatum HOM05D004065 ORTHO05D004806 0.0e+00 1580.5 1264 67.2
Duzib114G0580 Durio zibethinus HOM05D004065 ORTHO05D004806 0.0e+00 1558.9 1260 66.7
Gorai.012G069700 Gossypium raimondii HOM05D004065 ORTHO05D004806 0.0e+00 1548.5 1239 67.1
Dinv25990 Davidia involucrata HOM05D004065 ORTHO05D004806 0.0e+00 1546.2 1228 67.8
Duzib106G1820 Durio zibethinus HOM05D004065 ORTHO05D004806 0.0e+00 1543.9 1244 67.0
Gorai.011G255800 Gossypium raimondii HOM05D004065 ORTHO05D004806 0.0e+00 1543.1 1242 66.3
Gohir.A10G215800 Gossypium hirsutum HOM05D004065 ORTHO05D004806 0.0e+00 1541.9 1242 66.3
Ciclev10030542m.g Citrus clementina HOM05D004065 ORTHO05D004806 0.0e+00 1537.7 1233 67.5
Gohir.D04G062400 Gossypium hirsutum HOM05D004065 ORTHO05D004806 0.0e+00 1536.2 1236 66.7
Potri.010G207900 Populus trichocarpa HOM05D004065 ORTHO05D004806 0.0e+00 1536.2 1232 66.6
Manes.10G033000 Manihot esculenta HOM05D004065 ORTHO05D004806 0.0e+00 1533.1 1231 67.0
Sed0019555 Sechium edule HOM05D004065 ORTHO05D004806 0.0e+00 1529.2 1225 65.6
Gohir.D10G224800 Gossypium hirsutum HOM05D004065 ORTHO05D004806 0.0e+00 1526.9 1242 65.8
Dinv31435 Davidia involucrata HOM05D004065 ORTHO05D004806 0.0e+00 1521.1 1229 67.2
CsaV3_5G008100 Cucumis sativus L. HOM05D004065 ORTHO05D004806 0.0e+00 1518.1 1232 65.3
Hma1.2p1_0727F.1_g209200 Hydrangea macrophylla HOM05D004065 ORTHO05D004806 0.0e+00 1515.7 1228 67.3
TWI15G0503 Tripterygium wilfordii HOM05D004065 ORTHO05D004806 0.0e+00 1514.2 1237 67.0
TWI38G1478 Tripterygium wilfordii HOM05D004065 ORTHO05D004806 0.0e+00 1513.4 1233 66.7
GSVIVG01016585001 Vitis vinifera HOM05D004065 ORTHO05D004806 0.0e+00 1498.8 1228 65.9
TAR633G2080 Trochodendron aralioides HOM05D004065 ORTHO05D004806 0.0e+00 1497.6 1238 65.5
MELO3C023859.2 Cucumis melo HOM05D004065 ORTHO05D004806 0.0e+00 1494.6 1230 64.7
Haze_17038 Corylus avellana HOM05D004065 ORTHO05D004806 0.0e+00 1493.8 1234 66.3
Eucgr.G02920 Eucalyptus grandis HOM05D004065 ORTHO05D004806 0.0e+00 1484.5 1226 65.5
Nn2g10418 Nelumbo nucifera HOM05D004065 ORTHO05D004806 0.0e+00 1474.1 1235 63.7
Potri.008G052700 Populus trichocarpa HOM05D004065 ORTHO05D004806 0.0e+00 1466.1 1236 64.9
CSS0036524 Camellia sinensis var. sinensis HOM05D004065 ORTHO05D004806 0.0e+00 1462.6 1226 64.9
Glyma.02G093600 Glycine max HOM05D004065 ORTHO05D004806 0.0e+00 1454.1 1212 64.6
Gohir.A05G350100 Gossypium hirsutum HOM05D004065 ORTHO05D004806 0.0e+00 1447.6 1230 64.1
ClCG07G003370 Citrullus lanatus HOM05D004065 ORTHO05D004806 0.0e+00 1447.2 1424 57.4
CiPaw.01G284400 Carya illinoinensis HOM05D004065 ORTHO05D004806 0.0e+00 1441.8 1233 65.7
THA.LOC104799352 Tarenaya hassleriana HOM05D004065 ORTHO05D004806 0.0e+00 1438.3 1219 64.4
Sabra10G0160500 Salix brachista HOM05D004065 ORTHO05D004806 0.0e+00 1433.7 1256 62.7
Phvul.008G013500 Phaseolus vulgaris HOM05D004065 ORTHO05D004806 0.0e+00 1424.1 1241 62.9
Cc02_g08160 Coffea canephora HOM05D004065 ORTHO05D004806 0.0e+00 1420.2 1226 62.8
Lj1g0007112 Lotus japonicus HOM05D004065 ORTHO05D004806 0.0e+00 1419.8 1217 64.2
Lalb_Chr04g0257821 Lupinus albus HOM05D004065 ORTHO05D004806 0.0e+00 1413.3 1204 64.1
Ca_07234_v3 Cicer arietinum L. HOM05D004065 ORTHO05D004806 0.0e+00 1409.8 1215 63.5
CARHR087100 Cardamine hirsuta HOM05D004065 ORTHO05D004806 0.0e+00 1408.7 1219 63.2
arahy.Tifrunner.gnm1.ann1.P8VZLW Arachis hypogaea HOM05D004065 ORTHO05D004806 0.0e+00 1408.3 1218 63.2
arahy.Tifrunner.gnm1.ann1.XU51RJ Arachis hypogaea HOM05D004065 ORTHO05D004806 0.0e+00 1408.3 1218 63.2
AT3G12590 Arabidopsis thaliana HOM05D004065 ORTHO05D004806 0.0e+00 1406.0 1221 62.7
Thhalv10019927m.g Eutrema salsugineum HOM05D004065 ORTHO05D004806 0.0e+00 1406.0 1219 62.5
AL3G24260 Arabidopsis lyrata HOM05D004065 ORTHO05D004806 0.0e+00 1404.0 1219 62.7
Medtr7g024190 Medicago truncatula HOM05D004065 ORTHO05D004806 0.0e+00 1401.7 1215 63.3
Sopen06g010560 Solanum pennellii HOM05D004065 ORTHO05D004806 0.0e+00 1395.9 1233 60.8
BcaB04g21060 Brassica carinata HOM05D004065 ORTHO05D004806 0.0e+00 1393.3 1222 62.7
Psat3g180760 Pisum sativum HOM05D004065 ORTHO05D004806 0.0e+00 1390.6 1214 63.3
Aa31LG3G60 Aethionema arabicum HOM05D004065 ORTHO05D004806 0.0e+00 1388.2 1244 61.9
ECA238G1619 Erigeron canadensis HOM05D004065 ORTHO05D004806 0.0e+00 1388.2 1226 61.7
Carub.0003s1194 Capsella rubella HOM05D004065 ORTHO05D004806 0.0e+00 1382.9 1219 62.4
HanXRQChr07g0201231 Helianthus annuus HOM05D004065 ORTHO05D004806 0.0e+00 1382.1 1225 61.7
Lsat_1_v5_gn_2_117761 Lactuca sativa HOM05D004065 ORTHO05D004806 0.0e+00 1380.9 1227 61.7
BNapus_Darmor_BZH_scaffold_149p00120 Brassica napus HOM05D004065 ORTHO05D004806 0.0e+00 1379.8 1264 60.8
BraA01t04124Z Brassica rapa HOM05D004065 ORTHO05D004806 0.0e+00 1379.8 1264 60.8
BolC1t05197H Brassica oleracea HOM05D004065 ORTHO05D004806 0.0e+00 1375.9 1250 61.2
C01p52580 Brassica napus HOM05D004065 ORTHO05D004806 0.0e+00 1374.4 1264 60.4
PGR142G1305 Punica granatum HOM05D004065 ORTHO05D004806 0.0e+00 1371.3 1157 62.9
Glyma.20G099500 Glycine max HOM05D004065 ORTHO05D004806 0.0e+00 1369.4 1214 62.2
DCAR_019167 Daucus carota HOM05D004065 ORTHO05D004806 0.0e+00 1368.6 1235 59.9
Sp3g10730 Schrenkiella parvula HOM05D004065 ORTHO05D004806 0.0e+00 1368.2 1219 61.9
MSTRG.8235 Avicennia marina HOM05D004065 ORTHO05D004806 0.0e+00 1364.4 1222 60.5
Glyma.10G289700 Glycine max HOM05D004065 ORTHO05D004806 0.0e+00 1361.3 1214 62.2
TPR.G15495 Trifolium pratense HOM05D004065 ORTHO05D004806 0.0e+00 1360.5 1195 63.2
LjContig00357g0027530 Lotus japonicus HOM05D004065 ORTHO05D004806 0.0e+00 1360.1 1242 60.5
SGA_v2.0_scaffold2G00996 Striga asiatica HOM05D004065 ORTHO05D004806 0.0e+00 1357.8 1231 60.7
Migut.F01518 Erythranthe guttata HOM05D004065 ORTHO05D004806 0.0e+00 1345.5 1202 61.1
BraA03t12924Z Brassica rapa HOM05D004065 ORTHO05D004806 0.0e+00 1331.6 1225 61.1
Rhsim09G0164300 Rhododendron simsii HOM05D004065 ORTHO05D004806 0.0e+00 1331.6 1365 57.2
AUR62038371 Chenopodium quinoa HOM05D004065 ORTHO05D004806 0.0e+00 1328.2 1262 60.1
Aqoxy2G02042 Aquilegia oxysepala HOM05D004065 ORTHO05D004806 0.0e+00 1322.4 1244 58.8
SalBow6G0580 Salvia bowleyana HOM05D004065 ORTHO05D004806 0.0e+00 1321.2 1259 58.4
A03p37690 Brassica napus HOM05D000062 ORTHO05D004806 0.0e+00 1316.2 1200 61.2
PSO339G3310 Papaver somniferum HOM05D004065 ORTHO05D004806 0.0e+00 1309.3 1172 60.9
EL10Ac2g03418 Beta vulgaris HOM05D004065 ORTHO05D004806 0.0e+00 1307.4 1252 59.4
COL.COLO4_14967 Corchorus olitorius HOM05D004065 ORTHO05D004806 0.0e+00 1306.2 1170 61.7
BcaC01g04018 Brassica carinata HOM05D004065 ORTHO05D004806 0.0e+00 1305.8 1212 60.7
C03p45740 Brassica napus HOM05D000062 ORTHO05D004806 0.0e+00 1295.4 1202 60.5
Lalb_Chr06g0164301 Lupinus albus HOM05D004065 ORTHO05D004806 0.0e+00 1250.7 1160 60.0
DCAR_015196 Daucus carota HOM05D004065 ORTHO05D004806 0.0e+00 1225.3 1220 55.8
Nitab4.5_0001836g0030 Nicotiana tabacum HOM05D004065 ORTHO05D004806 0.0e+00 1218.8 1033 62.5
FAN06G3693 Fragaria x ananassa HOM05D004065 ORTHO05D004806 0.0e+00 1216.8 673 94.1
Lj8C86G13 Lonicera japonica HOM05D004065 ORTHO05D004806 0.0e+00 1166.0 1184 56.1
AUR62040961 Chenopodium quinoa HOM05D004065 ORTHO05D004806 0.0e+00 1162.5 1083 60.0
Oeu016023.5 Olea europaea HOM05D004065 ORTHO05D004806 0.0e+00 1160.6 1077 58.3
BcaB04g21053 Brassica carinata HOM05D004065 ORTHO05D004806 0.0e+00 1150.6 1200 55.8
QL08p059042 Quercus lobata HOM05D004065 ORTHO05D004806 0.0e+00 1133.2 831 72.6
unitig_26.g10019 Utricularia gibba HOM05D004065 ORTHO05D004806 0.0e+00 1127.9 1135 54.8
Sc20g0002620 Simmondsia chinensis HOM05D004065 ORTHO05D004806 0.0e+00 1095.9 997 61.2
Glyma.18G288500 Glycine max HOM05D004065 ORTHO05D004806 0.0e+00 1089.7 1208 53.1
ATR0559G344 Amborella trichopoda HOM05D004065 ORTHO05D004806 3.7e-302 1042.0 1199 51.7
HPP92_003382 Vanilla planifolia HOM05D004065 ORTHO05D004806 2.8e-294 1015.8 1160 50.8
CDE04G2206 Ceratophyllum demersum HOM05D004065 ORTHO05D004806 2.1e-281 973.0 1152 48.7
SEGI_35631 Sequoiadendron giganteum HOM05D004065 ORTHO05D004806 1.4e-280 970.3 1257 48.6
Actinidia13867 Actinidia chinensis HOM05D004065 ORTHO05D004806 1.9e-266 923.3 787 64.5
CiPaw.02G182500 Carya illinoinensis HOM05D004065 ORTHO05D004806 1.5e-263 913.7 688 68.9
Psat6g236120 Pisum sativum HOM05D004065 ORTHO05D004806 3.8e-262 909.1 744 64.8
Zm00001eb139750 Zea mays HOM05D004065 ORTHO05D004806 9.3e-253 877.9 952 52.1
Mapoly0126s0012 Marchantia polymorpha HOM05D004065 ORTHO05D004806 1.9e-234 817.0 1271 41.9
Pp3c24_6470 Physcomitrium patens HOM05D004065 ORTHO05D004806 6.5e-222 775.4 1280 40.4
Solyc06g042950.3 Solanum lycopersicum HOM05D004065 ORTHO05D004806 2.1e-220 770.4 635 62.8
Hund20020 Selenicereus undatus HOM05D004065 ORTHO05D004806 2.4e-216 756.9 665 60.6
BolC3t16849H Brassica oleracea HOM05D004065 ORTHO05D004806 5.1e-211 739.2 709 59.9
AagrBONN_evm.TU.Sc2ySwM_344.343 Anthoceros agrestis HOM05D004065 ORTHO05D004806 1.1e-202 711.4 1147 40.4
Cpa.g.sc1437.1 Carica papaya HOM05D004065 ORTHO05D004806 2.4e-200 703.7 593 64.1
Peaxi162Scf00658g00731 Petunia axillaris HOM05D004065 ORTHO05D004806 3.1e-200 703.4 615 60.5
BcaB04g21068 Brassica carinata HOM05D004065 ORTHO05D004806 5.5e-197 692.6 689 56.7
Actinidia29212 Actinidia chinensis HOM05D004065 ORTHO05D004806 2.4e-176 624.0 590 57.6
SMO146G0347 Selaginella moellendorffii HOM05D004065 ORTHO05D004806 3.6e-172 610.1 1150 36.6
FAN01G2126 Fragaria x ananassa HOM05D004065 ORTHO05D004806 6.8e-163 579.3 1145 39.2
Nitab4.5_0005137g0020 Nicotiana tabacum HOM05D004065 ORTHO05D004806 1.7e-161 574.7 522 58.2
Solyc06g042960.3 Solanum lycopersicum HOM05D004065 ORTHO05D004806 4.6e-159 566.6 466 64.6
Nitab4.5_0005137g0010 Nicotiana tabacum HOM05D004065 ORTHO05D004806 3.3e-157 560.5 462 64.9
Peaxi162Scf00658g00725 Petunia axillaris HOM05D004065 ORTHO05D004806 6.4e-145 519.6 438 63.7
FvH4_7g22001 Fragaria vesca HOM05D004065 ORTHO05D004806 4.0e-139 500.4 314 86.0
CBR_g54636 Chara braunii HOM05D004065 ORTHO05D004806 1.2e-130 472.2 1548 28.9
Cpa.g.sc1.377 Carica papaya HOM05D004065 ORTHO05D004806 4.3e-125 453.8 408 61.8
FAN06G4849 Fragaria x ananassa HOM05D004065 ORTHO05D004806 7.6e-122 443.0 396 66.2
QL08p059051 Quercus lobata HOM05D004065 ORTHO05D004806 2.3e-118 431.4 423 59.6
SHI22587 Sapria himalayana HOM05D004065 ORTHO05D004806 1.9e-96 358.6 422 48.8
CiPaw.02G182400 Carya illinoinensis HOM05D004065 ORTHO05D004806 2.8e-92 344.7 255 73.3
Ah.16g107250 Amaranthus hybridus HOM05D004065 ORTHO05D004806 3.5e-90 337.8 493 47.3
Psat6g236080 Pisum sativum HOM05D004065 ORTHO05D004806 5.0e-89 334.0 369 54.2
FAN18G1692 Fragaria x ananassa HOM05D004065 ORTHO05D004806 1.1e-83 316.2 210 81.0
FAN14G4766 Fragaria x ananassa HOM05D004065 ORTHO05D004806 7.0e-83 313.5 208 81.2
FAN03G2077 Fragaria x ananassa HOM05D004065 ORTHO05D004806 5.9e-82 310.5 208 80.3
FAN01G0794 Fragaria x ananassa HOM05D004065 ORTHO05D004806 6.5e-81 307.0 183 89.6
FAN25G3689 Fragaria x ananassa HOM05D004065 ORTHO05D004806 1.5e-80 305.8 205 80.0
SHI22586 Sapria himalayana HOM05D004065 ORTHO05D004806 2.5e-72 278.5 293 52.2
FvH4_7g22002 Fragaria vesca HOM05D004065 ORTHO05D004806 5.7e-69 267.3 201 73.1
Nn8g40630 Nelumbo nucifera HOM05D004065 ORTHO05D004806 2.5e-64 251.9 247 53.8
FAN06G1862 Fragaria x ananassa HOM05D004065 ORTHO05D004806 4.0e-62 244.6 134 91.0
Hma1.2p1_1137F.1_g260730 Hydrangea macrophylla HOM05D004065 ORTHO05D004806 2.0e-61 242.3 210 61.4
FAN11G1748 Fragaria x ananassa HOM05D004065 ORTHO05D004806 7.5e-61 240.4 130 92.3
BolC8t48103H Brassica oleracea HOM05D004065 ORTHO05D004806 3.7e-60 238.0 262 48.9
FvH4_7g26620 Fragaria vesca HOM05D004065 ORTHO05D004806 2.4e-59 235.3 130 90.8
FAN08G2500 Fragaria x ananassa HOM05D000391 ORTHO05D000293 3.2e-59 235.0 127 92.1
FAN01G2840 Fragaria x ananassa HOM05D004065 ORTHO05D004806 4.0e-54 218.0 132 91.7
Os01g0974300 Oryza sativa ssp. japonica HOM05D004065 ORTHO05D004806 8.9e-46 190.3 180 52.2
FAN25G3365 Fragaria x ananassa HOM05D004065 ORTHO05D004806 2.6e-45 188.7 111 84.7
Hma1.2p1_0067F.1_g037070 Hydrangea macrophylla HOM05D004065 ORTHO05D004806 3.4e-45 188.3 176 57.4
FAN03G1547 Fragaria x ananassa HOM05D004065 ORTHO05D004806 6.0e-42 177.6 130 76.2
Oeu012240.1 Olea europaea HOM05D004065 ORTHO05D004806 1.5e-40 172.9 171 59.1
MBI05_g10364_MAGBIO Magnolia biondii HOM05D004065 ORTHO05D004806 6.8e-30 137.5 106 63.2
AagrBONN_evm.TU.Sc2ySwM_344.348 Anthoceros agrestis HOM05D004065 ORTHO05D004806 2.1e-23 115.9 235 37.4
SHI22581 Sapria himalayana HOM05D004065 ORTHO05D004806 5.3e-22 111.3 171 45.0
Nitab4.5_0001836g0020 Nicotiana tabacum HOM05D004065 ORTHO05D004806 1.2e-21 110.2 109 58.7
Nitab4.5_0005137g0030 Nicotiana tabacum HOM05D004065 ORTHO05D004806 2.0e-21 109.4 109 58.7
AagrBONN_evm.TU.Sc2ySwM_344.350 Anthoceros agrestis HOM05D004065 ORTHO05D004806 3.8e-20 105.1 64 79.7
Gohir.A12G155100 Gossypium hirsutum HOM05D004065 ORTHO05D004806 3.6e-15 88.6 63 66.7
arahy.Tifrunner.gnm1.ann1.JMTW06 Arachis hypogaea HOM05D004065 ORTHO05D004806 1.1e-14 87.0 57 77.2
Zm00001eb362160 Zea mays HOM05D008199 ORTHO05D010334 9.0e-14 84.0 133 44.4
Peaxi162Scf00658g00733 Petunia axillaris HOM05D004065 ORTHO05D004806 2.6e-13 82.4 100 51.0
Cre17.g707100 Chlamydomonas reinhardtii HOM05D004065 ORTHO05D004806 1.4e-11 76.6 121 35.5
AagrBONN_evm.TU.Sc2ySwM_344.349 Anthoceros agrestis HOM05D004065 ORTHO05D004806 3.2e-11 75.5 195 29.2
Solyc06g042980.3 Solanum lycopersicum HOM05D004065 ORTHO05D004806 1.1e-08 67.0 109 41.3
Cfa005276 Carpinus fangiana HOM05D004065 ORTHO05D020362 7.4e-08 64.3 52 69.2
SHI22582 Sapria himalayana HOM05D004065 ORTHO05D004806 7.4e-08 64.3 72 48.6
SHI22580 Sapria himalayana HOM05D004065 ORTHO05D004806 9.6e-08 63.9 134 40.3


User provided reference genes

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