Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN06G3325 Fragaria x ananassa HOM05D001997 ORTHO05D004620 0.0e+00 1188.7 647 100.0
FvH4_7g14000 Fragaria vesca HOM05D001997 ORTHO05D004620 0.0e+00 1162.9 647 98.0
FAN10G2611 Fragaria x ananassa HOM05D001997 ORTHO05D004620 0.0e+00 1162.1 647 98.0
FAN10G3464 Fragaria x ananassa HOM05D001997 ORTHO05D004620 0.0e+00 1162.1 647 98.0
FAN01G1889 Fragaria x ananassa HOM05D001997 ORTHO05D004620 0.0e+00 1161.7 647 97.4
FAN03G0113 Fragaria x ananassa HOM05D001997 ORTHO05D004620 0.0e+00 1159.8 647 97.5
FAN10G4317 Fragaria x ananassa HOM05D001997 ORTHO05D004620 0.0e+00 1158.7 647 97.7
FAN06G4213 Fragaria x ananassa HOM05D001997 ORTHO05D004620 0.0e+00 1156.7 647 97.4
RcHm_v2.0_Chr1g0354651 Rosa chinensis HOM05D001997 ORTHO05D004620 0.0e+00 1092.0 647 90.7
MD07G1139400 Malus domestica HOM05D001997 ORTHO05D004620 6.0e-251 870.9 647 73.4
Prupe.2G167200 Prunus persica HOM05D001997 ORTHO05D004620 1.5e-246 856.3 647 73.1
Cfa015772 Carpinus fangiana HOM05D001997 ORTHO05D004620 1.1e-233 813.5 647 67.1
QL10p047463 Quercus lobata HOM05D001997 ORTHO05D004620 4.0e-231 805.1 646 65.6
Haze_00722 Corylus avellana HOM05D001997 ORTHO05D004620 3.9e-226 788.5 637 66.7
Sabra17G0022600 Salix brachista HOM05D001997 ORTHO05D004620 1.7e-221 773.1 647 62.8
Potri.017G035700 Populus trichocarpa HOM05D001997 ORTHO05D004620 4.2e-220 768.5 647 62.8
CANSAT21G1219 Cannabis sativa HOM05D001997 ORTHO05D004620 3.6e-219 765.4 648 63.7
Potri.007G124700 Populus trichocarpa HOM05D001997 ORTHO05D004620 3.6e-219 765.4 653 61.9
Hma1.2p1_0597F.1_g186510 Hydrangea macrophylla HOM05D001997 ORTHO05D004620 1.1e-217 760.4 650 62.5
Manes.04G048600 Manihot esculenta HOM05D001997 ORTHO05D004620 3.3e-217 758.8 649 61.2
Atru.chr3.1570 Acer truncatum HOM05D001997 ORTHO05D004620 7.4e-217 757.7 647 62.3
Atru.chr3.1589 Acer truncatum HOM05D001997 ORTHO05D004620 7.4e-217 757.7 647 62.3
Ciclev10019328m.g Citrus clementina HOM05D001997 ORTHO05D004620 7.2e-212 741.1 647 61.2
CiPaw.02G056300 Carya illinoinensis HOM05D001997 ORTHO05D004620 5.1e-210 734.9 636 62.3
Dinv22695 Davidia involucrata HOM05D001997 ORTHO05D004620 4.4e-209 731.9 646 61.3
TWI36G0125 Tripterygium wilfordii HOM05D001997 ORTHO05D004620 4.8e-208 728.4 647 60.4
Duzib093G0427 Durio zibethinus HOM05D001997 ORTHO05D004620 1.8e-207 726.5 649 61.3
Rhsim09G0030400 Rhododendron simsii HOM05D001997 ORTHO05D004620 7.0e-207 724.5 651 60.2
Lj6C60T7 Lonicera japonica HOM05D001997 ORTHO05D004620 1.5e-206 723.4 651 59.8
Gorai.004G087500 Gossypium raimondii HOM05D001997 ORTHO05D004620 2.0e-201 706.4 648 59.0
Gorai.006G186500 Gossypium raimondii HOM05D001997 ORTHO05D004620 7.4e-201 704.5 649 58.9
Gohir.D08G083300 Gossypium hirsutum HOM05D001997 ORTHO05D004620 1.3e-200 703.7 649 58.9
Gohir.A08G074100 Gossypium hirsutum HOM05D001997 ORTHO05D004620 6.3e-200 701.4 648 59.1
TAR622G0498 Trochodendron aralioides HOM05D001997 ORTHO05D004620 2.6e-198 696.0 652 58.9
PGR044G1365 Punica granatum HOM05D001997 ORTHO05D004620 2.9e-197 692.6 648 58.0
TAR636G0474 Trochodendron aralioides HOM05D001997 ORTHO05D004620 1.9e-196 689.9 652 58.4
Actinidia35961 Actinidia chinensis HOM05D001997 ORTHO05D004620 3.6e-195 685.6 650 57.7
CSS0007184 Camellia sinensis var. sinensis HOM05D001997 ORTHO05D004620 1.4e-194 683.7 616 60.6
Peaxi162Scf00375g00082 Petunia axillaris HOM05D001997 ORTHO05D004620 1.1e-191 674.1 651 58.4
Sc19g0002180 Simmondsia chinensis HOM05D001997 ORTHO05D004620 1.2e-190 670.6 647 56.9
Sopen06g029850 Solanum pennellii HOM05D001997 ORTHO05D004620 3.8e-189 665.6 661 56.7
Lsat_1_v5_gn_6_55020 Lactuca sativa HOM05D001997 ORTHO05D004620 1.5e-188 663.7 647 56.4
Nitab4.5_0010690g0010 Nicotiana tabacum HOM05D001997 ORTHO05D004620 7.2e-188 661.4 651 57.1
Cc01_g08750 Coffea canephora HOM05D001997 ORTHO05D004620 1.6e-187 660.2 677 55.7
PGSC0003DMG400026903 Solanum tuberosum HOM05D001997 ORTHO05D004620 2.1e-187 659.8 661 56.4
Glyma.11G094600 Glycine max HOM05D001997 ORTHO05D004620 8.0e-187 657.9 643 57.4
Thecc.05G002900 Theobroma cacao HOM05D001997 ORTHO05D004620 1.8e-186 656.8 649 55.8
THA.LOC104802304 Tarenaya hassleriana HOM05D001997 ORTHO05D004620 1.2e-185 654.1 649 56.1
MSTRG.17660 Avicennia marina HOM05D001997 ORTHO05D004620 1.1e-183 647.5 666 54.7
AT2G43250 Arabidopsis thaliana HOM05D001997 ORTHO05D004620 3.5e-182 642.5 644 55.3
CARHR138340 Cardamine hirsuta HOM05D001997 ORTHO05D004620 7.7e-182 641.3 647 55.0
AUR62035000 Chenopodium quinoa HOM05D001997 ORTHO05D004620 2.9e-181 639.4 652 53.7
Lj3g0010188 Lotus japonicus HOM05D001997 ORTHO05D004620 2.9e-181 639.4 668 54.3
Oeu015677.2 Olea europaea HOM05D001997 ORTHO05D004620 6.6e-181 638.3 671 54.4
Phvul.011G023500 Phaseolus vulgaris HOM05D001997 ORTHO05D004620 1.5e-180 637.1 653 55.7
Thhalv10001801m.g Eutrema salsugineum HOM05D001997 ORTHO05D004620 1.9e-180 636.7 647 54.3
Sp4g25380 Schrenkiella parvula HOM05D001997 ORTHO05D004620 1.4e-178 630.6 647 54.3
MSTRG.12412 Avicennia marina HOM05D001997 ORTHO05D004620 1.2e-177 627.5 659 54.2
Ca_26058_v3 Cicer arietinum L. HOM05D001997 ORTHO05D004620 1.5e-177 627.1 666 53.0
HanXRQChr02g0057961 Helianthus annuus HOM05D001997 ORTHO05D004620 7.5e-177 624.8 647 54.1
VMungo1127G1251 Vigna mungo HOM05D001997 ORTHO05D004620 9.8e-177 624.4 650 54.2
MBI11_g35030_MAGBIO Magnolia biondii HOM05D001997 ORTHO05D004620 8.3e-176 621.3 650 54.0
arahy.Tifrunner.gnm1.ann1.JTZ133 Arachis hypogaea HOM05D001997 ORTHO05D004620 4.1e-175 619.0 638 53.1
Psat7g172720 Pisum sativum HOM05D001997 ORTHO05D004620 1.2e-174 617.5 661 52.6
ECA233G5997 Erigeron canadensis HOM05D001997 ORTHO05D004620 2.7e-174 616.3 644 53.6
Glyma.03G127700 Glycine max HOM05D001997 ORTHO05D004620 3.5e-174 615.9 659 53.9
Dinv05995 Davidia involucrata HOM05D001997 ORTHO05D004620 7.8e-174 614.8 643 53.5
Ca_30128_v3 Cicer arietinum L. HOM05D001997 ORTHO05D004620 1.3e-173 614.0 654 53.1
AL4G41910 Arabidopsis lyrata HOM05D001997 ORTHO05D004620 5.0e-173 612.1 644 53.6
TPR.G13756 Trifolium pratense HOM05D001997 ORTHO05D004620 2.5e-172 609.8 664 53.0
A04p32530 Brassica napus HOM05D001997 ORTHO05D004620 2.1e-171 606.7 647 53.6
BcaC02g07197 Brassica carinata HOM05D001997 ORTHO05D004620 3.1e-170 602.8 639 53.5
C04p70220 Brassica napus HOM05D001997 ORTHO05D004620 3.1e-170 602.8 647 52.9
BolC4t28526H Brassica oleracea HOM05D001997 ORTHO05D004620 3.1e-170 602.8 639 53.5
BraA04t18717Z Brassica rapa HOM05D001997 ORTHO05D004620 1.5e-169 600.5 648 53.4
Ah.05g167000 Amaranthus hybridus HOM05D001997 ORTHO05D004620 2.6e-169 599.7 637 52.7
HanXRQChr07g0186151 Helianthus annuus HOM05D001997 ORTHO05D004620 4.4e-169 599.0 644 52.6
Aqoxy7G03960 Aquilegia oxysepala HOM05D001997 ORTHO05D004620 1.4e-167 594.0 654 51.2
Sabra17G0022300 Salix brachista HOM05D001997 ORTHO05D004620 2.0e-166 590.1 581 56.3
AUR62037461 Chenopodium quinoa HOM05D001997 ORTHO05D004620 1.7e-165 587.0 652 51.2
Migut.N02417 Erythranthe guttata HOM05D001997 ORTHO05D004620 2.5e-164 583.2 662 52.3
Medtr4g076620 Medicago truncatula HOM05D001997 ORTHO05D004620 3.3e-164 582.8 661 51.1
SGA_v2.0_scaffold16G07570 Striga asiatica HOM05D001997 ORTHO05D004620 4.3e-164 582.4 660 53.3
BcaB06g29293 Brassica carinata HOM05D001997 ORTHO05D004620 7.5e-161 571.6 614 54.7
PSO675G0019 Papaver somniferum HOM05D001997 ORTHO05D004620 1.1e-159 567.8 675 48.6
PSO017G4366 Papaver somniferum HOM05D001997 ORTHO05D004620 2.3e-157 560.1 673 48.0
DCAR_010832 Daucus carota HOM05D001997 ORTHO05D004620 8.6e-157 558.1 603 52.7
Medtr4g076640 Medicago truncatula HOM05D001997 ORTHO05D004620 1.5e-156 557.4 642 50.2
arahy.Tifrunner.gnm1.ann1.7X5TTD Arachis hypogaea HOM05D001997 ORTHO05D004620 5.6e-156 555.4 648 49.8
Nitab4.5_0002368g0100 Nicotiana tabacum HOM05D001997 ORTHO05D004620 1.6e-155 553.9 567 56.3
TPR.G13749 Trifolium pratense HOM05D001997 ORTHO05D004620 1.7e-152 543.9 666 48.0
Carub.0004s2573 Capsella rubella HOM05D001997 ORTHO05D004620 4.9e-152 542.3 646 49.7
Oeu048804.2 Olea europaea HOM05D001997 ORTHO05D004620 4.9e-152 542.3 638 48.7
CDE08G0116 Ceratophyllum demersum HOM05D001997 ORTHO05D004620 1.6e-150 537.3 632 48.9
Lj4g0020139 Lotus japonicus HOM05D001997 ORTHO05D004620 4.6e-150 535.8 639 50.2
unitig_22.g6172 Utricularia gibba HOM05D001997 ORTHO05D004620 6.6e-149 531.9 659 49.2
HPP92_007608 Vanilla planifolia HOM05D001997 ORTHO05D004620 6.8e-146 521.9 645 46.8
Glyma.12G021000 Glycine max HOM05D001997 ORTHO05D004620 8.9e-146 521.5 629 50.2
Gohir.D09G164700 Gossypium hirsutum HOM05D001997 ORTHO05D004620 3.3e-140 503.1 469 59.5
Gohir.A09G169000 Gossypium hirsutum HOM05D001997 ORTHO05D004620 1.1e-138 498.0 469 59.3
ATR0743G280 Amborella trichopoda HOM05D001997 ORTHO05D004620 1.4e-138 497.7 673 46.1
Eucgr.A00056 Eucalyptus grandis HOM05D001997 ORTHO05D004620 9.9e-137 491.5 444 60.4
Zm00001eb425530 Zea mays HOM05D001997 ORTHO05D004620 5.4e-135 485.7 685 44.2
Os04g0490700 Oryza sativa ssp. japonica HOM05D001997 ORTHO05D004620 7.1e-135 485.3 677 43.4
Solyc06g073490.2 Solanum lycopersicum HOM05D001997 ORTHO05D004620 1.6e-131 474.2 441 59.6
Haze_01373 Corylus avellana HOM05D001997 ORTHO05D004620 1.7e-128 464.2 647 42.0
Nn5g27952 Nelumbo nucifera HOM05D001997 ORTHO05D004620 2.9e-128 463.4 513 50.1
Cfa015264 Carpinus fangiana HOM05D001997 ORTHO05D004620 1.4e-127 461.1 649 42.2
MD01G1056400 Malus domestica HOM05D001997 ORTHO05D004620 5.4e-127 459.1 399 61.4
Lalb_Chr01g0001101 Lupinus albus HOM05D001997 ORTHO05D004620 4.0e-122 443.0 430 56.3
SEGI_28245 Sequoiadendron giganteum HOM05D001997 ORTHO05D004620 2.0e-121 440.7 681 40.7
Thhalv10001772m.g Eutrema salsugineum HOM05D001997 ORTHO05D004620 4.3e-116 422.9 640 44.2
C08p23950 Brassica napus HOM05D001997 ORTHO05D004620 1.5e-108 397.9 645 41.6
Glyma.19G130251 Glycine max HOM05D001997 ORTHO05D004620 9.0e-106 388.7 349 60.2
Cpa.g.sc81.168 Carica papaya HOM05D001997 ORTHO05D004620 2.0e-105 387.5 648 39.4
SalBow3G0527 Salvia bowleyana HOM05D001997 ORTHO05D004620 2.7e-102 377.1 361 59.3
BraA05t19355Z Brassica rapa HOM05D001997 ORTHO05D004620 1.4e-98 364.8 632 40.3
A05p03690 Brassica napus HOM05D001997 ORTHO05D004620 4.5e-97 359.8 632 40.0
GSVIVG01013581001 Vitis vinifera HOM05D001997 ORTHO05D004620 7.7e-97 359.0 404 51.0
C04p04300 Brassica napus HOM05D001997 ORTHO05D004620 6.5e-96 355.9 636 40.1
BcaC07g39373 Brassica carinata HOM05D001997 ORTHO05D004620 1.9e-95 354.4 624 39.4
BolC8t50019H Brassica oleracea HOM05D001997 ORTHO05D004620 3.2e-95 353.6 645 38.6
BolC4t22066H Brassica oleracea HOM05D001997 ORTHO05D004620 2.7e-94 350.5 636 39.8
RcHm_v2.0_Chr1g0373181 Rosa chinensis HOM05D001997 ORTHO05D004620 2.7e-94 350.5 625 39.2
A06p18770 Brassica napus HOM05D001997 ORTHO05D004620 2.0e-89 334.3 645 37.8
FvH4_7g26521 Fragaria vesca HOM05D001997 ORTHO05D004620 3.5e-89 333.6 625 38.9
Mapoly0021s0032 Marchantia polymorpha HOM05D001997 ORTHO05D004620 1.8e-82 311.2 672 33.0
FAN06G2538 Fragaria x ananassa HOM05D001997 ORTHO05D004620 7.7e-81 305.8 627 38.0
FAN03G0465 Fragaria x ananassa HOM05D001997 ORTHO05D004620 5.0e-80 303.1 627 37.5
FAN10G3679 Fragaria x ananassa HOM05D001997 ORTHO05D004620 5.4e-74 283.1 563 37.5
BcaNung06617 Brassica carinata HOM05D001997 ORTHO05D004620 4.5e-65 253.4 609 35.3
FAN01G2316 Fragaria x ananassa HOM05D001997 ORTHO05D004620 5.0e-64 250.0 579 34.7
Pp3c13_12610 Physcomitrium patens HOM05D001997 ORTHO05D004620 7.5e-52 209.5 652 28.1
BraA06t24958Z Brassica rapa HOM05D001997 ORTHO05D004620 2.9e-51 207.6 413 36.8
TPR.G11744 Trifolium pratense HOM05D001997 ORTHO05D004620 8.6e-48 196.1 329 40.1
Actinidia28986 Actinidia chinensis HOM05D001997 ORTHO05D004620 7.5e-44 183.0 314 40.4
GSVIVG01013582001 Vitis vinifera HOM05D001997 ORTHO05D004620 7.5e-44 183.0 186 54.3
BcaB06g29296 Brassica carinata HOM05D001997 ORTHO05D004620 3.5e-41 174.1 202 53.5
BcaC07g39374 Brassica carinata HOM05D001997 ORTHO05D004620 4.9e-35 153.7 153 53.6
Lsat_1_v5_gn_5_125441 Lactuca sativa HOM05D001997 ORTHO05D004620 1.1e-34 152.5 121 68.6
CAN.G46.28 Capsicum annuum HOM05D001997 ORTHO05D004620 1.4e-34 152.1 115 66.1
CAN.G138.1 Capsicum annuum HOM05D001997 ORTHO05D004620 4.1e-34 150.6 134 59.7
SHI06486 Sapria himalayana HOM05D002588 ORTHO05D002979 1.1e-31 142.5 133 61.7
MD01G1056500 Malus domestica HOM05D001997 ORTHO05D004620 1.2e-30 139.0 90 75.6
C04p70240 Brassica napus HOM05D001997 ORTHO05D004620 2.4e-29 134.8 108 64.8
CAN.G1014.21 Capsicum annuum HOM05D001997 ORTHO05D004620 1.9e-26 125.2 94 67.0
BcaB01g03399 Brassica carinata HOM05D001997 ORTHO05D004620 2.4e-26 124.8 368 31.0
CAN.G765.4 Capsicum annuum HOM05D001997 ORTHO05D004620 3.5e-25 120.9 94 63.8
BcaB06g29294 Brassica carinata HOM05D001997 ORTHO05D004620 7.8e-25 119.8 155 48.4
BcaC02g07196 Brassica carinata HOM05D001997 ORTHO05D004620 3.3e-23 114.4 90 64.4
Dinv44213 Davidia involucrata HOM05D001997 ORTHO05D004620 8.1e-22 109.8 66 78.8
BcaB06g29295 Brassica carinata HOM05D001997 ORTHO05D004620 2.4e-21 108.2 90 62.2
BolC4t28528H Brassica oleracea HOM05D001997 ORTHO05D004620 4.0e-21 107.5 111 55.9
AagrBONN_evm.TU.Sc2ySwM_228.3298 Anthoceros agrestis HOM05D001997 ORTHO05D004620 1.2e-20 105.9 181 37.6
SalBow3G4162 Salvia bowleyana HOM05D001997 ORTHO05D004620 3.4e-20 104.4 97 54.6
BolC4t28530H Brassica oleracea HOM05D001997 ORTHO05D004620 6.4e-19 100.1 144 45.1
SalBow3G4229 Salvia bowleyana HOM05D001997 ORTHO05D004620 6.0e-17 93.6 113 48.7
Medtr4g076610 Medicago truncatula HOM05D001997 ORTHO05D004620 8.7e-16 89.7 85 52.9
Actinidia11446 Actinidia chinensis HOM05D001997 ORTHO05D004620 1.5e-15 89.0 196 36.2
SGA_v2.0_scaffold4G02500 Striga asiatica HOM05D001997 ORTHO05D004620 2.5e-15 88.2 70 61.4
SMO356G0473 Selaginella moellendorffii HOM05D001997 ORTHO05D004620 1.1e-13 82.8 217 32.3
C04p70260 Brassica napus HOM05D001997 ORTHO05D004620 2.4e-13 81.6 232 31.5
A04p32560 Brassica napus HOM05D001997 ORTHO05D004620 1.5e-12 79.0 232 31.0
BraA04t18720Z Brassica rapa HOM05D001997 ORTHO05D004620 1.5e-12 79.0 232 31.0
TPR.G290 Trifolium pratense HOM05D001997 ORTHO05D004620 2.4e-10 71.6 51 66.7
BcaNung06616 Brassica carinata HOM05D001997 ORTHO05D004620 7.1e-10 70.1 96 42.7
BcaC05g28816 Brassica carinata HOM05D001997 ORTHO05D004620 9.3e-10 69.7 80 50.0
FAN10G4060 Fragaria x ananassa HOM05D001997 ORTHO05D004620 3.5e-09 67.8 279 25.8
BcaC01g05247 Brassica carinata HOM05D001997 ORTHO05D004620 1.1e-07 62.8 68 51.5
Hund00190 Selenicereus undatus HOM05D001997 ORTHO05D004620 1.1e-07 62.8 121 38.0
C03p28740 Brassica napus HOM05D001997 ORTHO05D004620 1.9e-07 62.0 60 51.7
BcaB01g03396 Brassica carinata HOM05D001623 ORTHO05D001473 2.8e-06 58.2 48 60.4


User provided reference genes

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