Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN06G3283 Fragaria x ananassa HOM05D002770 ORTHO05D003011 1.0e-119 433.3 211 100.0
FAN06G1321 Fragaria x ananassa HOM05D002770 ORTHO05D003011 6.3e-40 168.3 288 39.9
FvH4_7g08780 Fragaria vesca HOM05D002770 ORTHO05D003011 1.8e-39 166.8 287 40.4
FAN01G2864 Fragaria x ananassa HOM05D002770 ORTHO05D003011 2.4e-39 166.4 287 39.4
RcHm_v2.0_Chr1g0344071 Rosa chinensis HOM05D002770 ORTHO05D003011 3.1e-39 166.0 322 37.9
FAN03G2444 Fragaria x ananassa HOM05D002770 ORTHO05D003011 1.0e-37 161.0 287 38.7
Prupe.2G115700 Prunus persica HOM05D002770 ORTHO05D003011 2.1e-35 153.3 312 35.3
MD02G1224900 Malus domestica HOM05D002770 ORTHO05D003011 2.3e-34 149.8 314 33.4
FAN10G0308 Fragaria x ananassa HOM05D002770 ORTHO05D003011 2.4e-31 139.8 102 68.6
MD07G1090600 Malus domestica HOM05D002770 ORTHO05D003011 2.6e-30 136.3 311 32.8
QL04p026158 Quercus lobata HOM05D002770 ORTHO05D003011 6.5e-29 131.7 312 32.7
Gohir.A12G099200 Gossypium hirsutum HOM05D002770 ORTHO05D003011 3.2e-28 129.4 281 32.0
GSVIVG01018374001 Vitis vinifera HOM05D002770 ORTHO05D003011 4.2e-28 129.0 304 31.6
Eucgr.D01183 Eucalyptus grandis HOM05D002770 ORTHO05D003011 2.7e-27 126.3 289 31.1
Manes.05G058500 Manihot esculenta HOM05D002770 ORTHO05D003011 3.6e-27 125.9 285 31.2
Duzib138G1245 Durio zibethinus HOM05D002770 ORTHO05D003011 1.0e-26 124.4 282 31.9
Atru.chr5.43 Acer truncatum HOM05D002770 ORTHO05D003011 2.3e-26 123.2 288 31.6
Cfa011023 Carpinus fangiana HOM05D002770 ORTHO05D003011 3.9e-26 122.5 322 30.1
Gohir.D12G102200 Gossypium hirsutum HOM05D002770 ORTHO05D003011 3.9e-26 122.5 281 31.0
Gorai.008G111400 Gossypium raimondii HOM05D002770 ORTHO05D003011 3.9e-26 122.5 281 31.0
Thecc.01G402500 Theobroma cacao HOM05D002770 ORTHO05D003011 6.7e-26 121.7 286 31.5
COL.COLO4_12352 Corchorus olitorius HOM05D002770 ORTHO05D003011 2.6e-25 119.8 309 30.7
Dinv44022 Davidia involucrata HOM05D002770 ORTHO05D003011 3.3e-25 119.4 313 29.7
FvH4_7g08800 Fragaria vesca HOM05D002770 ORTHO05D003011 1.3e-24 117.5 61 95.1
Haze_02902 Corylus avellana HOM05D002770 ORTHO05D003011 1.7e-24 117.1 303 30.0
Potri.014G044200 Populus trichocarpa HOM05D002770 ORTHO05D003011 2.8e-24 116.3 289 30.1
AUR62023367 Chenopodium quinoa HOM05D002770 ORTHO05D003011 1.1e-23 114.4 325 29.2
Cpa.g.sc52.70 Carica papaya HOM05D002770 ORTHO05D003011 1.4e-23 114.0 286 30.4
SalBow4G3318 Salvia bowleyana HOM05D002770 ORTHO05D003011 1.4e-23 114.0 306 30.7
Aqoxy3G02558 Aquilegia oxysepala HOM05D002770 ORTHO05D003011 1.8e-23 113.6 320 28.8
CiPaw.14G016800 Carya illinoinensis HOM05D002770 ORTHO05D003011 7.0e-23 111.7 321 28.3
Gorai.004G067800 Gossypium raimondii HOM05D002770 ORTHO05D003011 7.0e-23 111.7 272 29.8
TWI14G0561 Tripterygium wilfordii HOM05D002770 ORTHO05D003011 9.1e-23 111.3 289 31.5
Lsat_1_v5_gn_7_11860 Lactuca sativa HOM05D002770 ORTHO05D003011 1.5e-22 110.5 248 34.3
TAR374G1576 Trochodendron aralioides HOM05D002770 ORTHO05D003011 2.0e-22 110.2 330 30.0
PGR004G2859 Punica granatum HOM05D002770 ORTHO05D003011 3.5e-22 109.4 289 29.4
Ciclev10019957m.g Citrus clementina HOM05D002770 ORTHO05D003011 4.5e-22 109.0 311 28.6
CSS0009152 Camellia sinensis var. sinensis HOM05D002770 ORTHO05D003011 1.0e-21 107.8 314 28.7
CSS0011590 Camellia sinensis var. sinensis HOM05D002770 ORTHO05D003011 1.7e-21 107.1 290 29.3
Sabra14G0032100 Salix brachista HOM05D002770 ORTHO05D003011 1.7e-21 107.1 288 28.8
Actinidia05788 Actinidia chinensis HOM05D002770 ORTHO05D003011 2.2e-21 106.7 283 29.0
Nn1g00665 Nelumbo nucifera HOM05D002770 ORTHO05D003011 5.0e-21 105.5 330 27.3
Lj9A550T68 Lonicera japonica HOM05D002770 ORTHO05D003011 8.5e-21 104.8 134 44.0
Sed0027284 Sechium edule HOM05D002770 ORTHO05D003011 4.2e-20 102.4 308 29.2
ECA236G0339 Erigeron canadensis HOM05D002770 ORTHO05D003011 5.5e-20 102.1 270 29.3
Peaxi162Scf00745g00016 Petunia axillaris HOM05D002770 ORTHO05D003011 5.5e-20 102.1 279 27.6
CSS0043922 Camellia sinensis var. sinensis HOM05D002770 ORTHO05D003011 7.2e-20 101.7 290 27.2
Hund27419 Selenicereus undatus HOM05D002770 ORTHO05D003011 7.2e-20 101.7 104 50.0
AUR62013789 Chenopodium quinoa HOM05D002770 ORTHO05D003011 9.4e-20 101.3 143 42.0
ClCG05G002890 Citrullus lanatus HOM05D002770 ORTHO05D003011 1.6e-19 100.5 323 28.5
Migut.N01715 Erythranthe guttata HOM05D002770 ORTHO05D003011 1.6e-19 100.5 322 29.2
MSTRG.4960 Avicennia marina HOM05D002770 ORTHO05D003011 3.6e-19 99.4 323 27.6
CAN.G756.17 Capsicum annuum HOM05D002770 ORTHO05D003011 3.6e-19 99.4 279 28.3
MELO3C006267.2 Cucumis melo HOM05D002770 ORTHO05D003011 3.6e-19 99.4 310 27.7
HanXRQChr06g0168271 Helianthus annuus HOM05D002770 ORTHO05D003011 3.6e-19 99.4 264 29.9
ATR1136G174 Amborella trichopoda HOM05D002770 ORTHO05D003011 4.7e-19 99.0 308 27.3
Nitab4.5_0004088g0050 Nicotiana tabacum HOM05D002770 ORTHO05D003011 4.7e-19 99.0 277 27.4
Nitab4.5_0005064g0050 Nicotiana tabacum HOM05D002770 ORTHO05D003011 6.1e-19 98.6 103 45.6
EL10Ac1g00714 Beta vulgaris HOM05D002770 ORTHO05D003011 8.0e-19 98.2 199 33.7
MSTRG.20663 Avicennia marina HOM05D002770 ORTHO05D003011 1.4e-18 97.4 127 43.3
MD07G1088800 Malus domestica HOM05D002770 ORTHO05D003011 1.4e-18 97.4 228 31.1
Sc02g0003270 Simmondsia chinensis HOM05D002770 ORTHO05D003011 1.8e-18 97.1 124 41.9
CANSAT25G0893 Cannabis sativa HOM05D002770 ORTHO05D003011 3.0e-18 96.3 108 45.4
Lj3g0001773 Lotus japonicus HOM05D002770 ORTHO05D003011 4.0e-18 95.9 278 27.0
MD07G1089700 Malus domestica HOM05D002770 ORTHO05D003011 5.2e-18 95.5 92 48.9
TPR.G17359 Trifolium pratense HOM05D002770 ORTHO05D003011 6.7e-18 95.1 280 25.7
Thhalv10001437m.g Eutrema salsugineum HOM05D002770 ORTHO05D003011 2.0e-17 93.6 275 28.4
PGSC0003DMG402001686 Solanum tuberosum HOM05D002770 ORTHO05D003011 2.6e-17 93.2 103 42.7
arahy.Tifrunner.gnm1.ann1.S2VHS4 Arachis hypogaea HOM05D002770 ORTHO05D003011 3.3e-17 92.8 298 27.5
Sp4g26720 Schrenkiella parvula HOM05D002770 ORTHO05D003011 4.4e-17 92.4 276 29.7
arahy.Tifrunner.gnm1.ann1.JDGP5U Arachis hypogaea HOM05D002770 ORTHO05D003011 5.7e-17 92.0 299 26.8
Cc02_g25620 Coffea canephora HOM05D002770 ORTHO05D003011 5.7e-17 92.0 290 27.2
Lalb_Chr07g0195181 Lupinus albus HOM05D002770 ORTHO05D003011 7.5e-17 91.7 147 37.4
CsaV3_3G010430 Cucumis sativus L. HOM05D002770 ORTHO05D003011 9.7e-17 91.3 103 43.7
THA.LOC104817177 Tarenaya hassleriana HOM05D002770 ORTHO05D003011 1.7e-16 90.5 103 43.7
BcaB02g08839 Brassica carinata HOM05D002770 ORTHO05D003011 2.2e-16 90.1 276 29.7
PGSC0003DMG401001686 Solanum tuberosum HOM05D002770 ORTHO05D003011 2.2e-16 90.1 137 38.0
Aa31LG1G26180 Aethionema arabicum HOM05D002770 ORTHO05D003011 2.8e-16 89.7 269 28.6
Ca_23142_v3 Cicer arietinum L. HOM05D002770 ORTHO05D003011 2.8e-16 89.7 275 26.2
MBI04_g03343_MAGBIO Magnolia biondii HOM05D002770 ORTHO05D003011 2.8e-16 89.7 147 37.4
Solyc01g088600.4 Solanum lycopersicum HOM05D002770 ORTHO05D003011 2.8e-16 89.7 137 38.7
BraA05t19454Z Brassica rapa HOM05D002770 ORTHO05D003011 6.3e-16 88.6 277 30.0
CARHR139850 Cardamine hirsuta HOM05D002770 ORTHO05D003011 6.3e-16 88.6 282 27.0
Sopen01g035450 Solanum pennellii HOM05D002770 ORTHO05D003011 6.3e-16 88.6 137 38.0
BcaC02g12288 Brassica carinata HOM05D002770 ORTHO05D003011 8.2e-16 88.2 277 29.6
C04p05590 Brassica napus HOM05D002770 ORTHO05D003011 8.2e-16 88.2 277 29.6
DCAR_025025 Daucus carota HOM05D002770 ORTHO05D003011 8.2e-16 88.2 134 41.8
AL4G43670 Arabidopsis lyrata HOM05D002770 ORTHO05D003011 1.4e-15 87.4 271 29.2
A03p24840 Brassica napus HOM05D002770 ORTHO05D003011 1.8e-15 87.0 279 28.3
BraA03t11691Z Brassica rapa HOM05D002770 ORTHO05D003011 1.8e-15 87.0 279 28.3
Glyma.03G103500 Glycine max HOM05D002770 ORTHO05D003011 1.8e-15 87.0 276 26.4
Gohir.A08G056150 Gossypium hirsutum HOM05D002770 ORTHO05D003011 3.1e-15 86.3 254 27.6
Phvul.010G041600 Phaseolus vulgaris HOM05D002770 ORTHO05D003011 5.3e-15 85.5 107 42.1
Carub.0004s2719 Capsella rubella HOM05D002770 ORTHO05D003011 7.0e-15 85.1 271 28.4
PSO782G1010 Papaver somniferum HOM05D002770 ORTHO05D003011 7.0e-15 85.1 98 42.9
Medtr8g009290 Medicago truncatula HOM05D002770 ORTHO05D003011 9.1e-15 84.7 124 37.1
BolC3t15311H Brassica oleracea HOM05D002770 ORTHO05D003011 1.2e-14 84.3 276 29.7
FAN10G2761 Fragaria x ananassa HOM05D002770 ORTHO05D003011 1.2e-14 84.3 159 39.6
FAN10G3358 Fragaria x ananassa HOM05D002770 ORTHO05D003011 1.6e-14 84.0 45 86.7
Psat0s4427g0040 Pisum sativum HOM05D002770 ORTHO05D003011 2.6e-14 83.2 280 24.3
Glyma.07G120500 Glycine max HOM05D002770 ORTHO05D003011 3.5e-14 82.8 93 44.1
CDE04G2107 Ceratophyllum demersum HOM05D002770 ORTHO05D003011 5.9e-14 82.0 102 43.1
BcaC01g05204 Brassica carinata HOM05D002770 ORTHO05D003011 7.7e-14 81.6 98 45.9
A05p04780 Brassica napus HOM05D002770 ORTHO05D003011 1.7e-13 80.5 101 42.6
BcaB01g03304 Brassica carinata HOM05D002770 ORTHO05D003011 2.9e-13 79.7 101 40.6
AT2G44640 Arabidopsis thaliana HOM05D002770 ORTHO05D003011 3.8e-13 79.3 101 42.6
VMungo0331G1148 Vigna mungo HOM05D002770 ORTHO05D003011 6.5e-13 78.6 95 42.1
BolC4t22189H Brassica oleracea HOM05D002770 ORTHO05D003011 2.5e-12 76.6 97 43.3
MD07G1089100 Malus domestica HOM05D002770 ORTHO05D003011 3.2e-12 76.3 227 29.1
Gohir.D08G065500 Gossypium hirsutum HOM05D002770 ORTHO05D003011 2.7e-11 73.2 204 28.9
unitig_26.g8859 Utricularia gibba HOM05D002770 ORTHO05D003011 5.2e-10 68.9 132 30.3
Zm00001eb127450 Zea mays HOM05D002770 ORTHO05D003011 5.2e-10 68.9 101 37.6
Os01g0251000 Oryza sativa ssp. japonica HOM05D002770 ORTHO05D003011 1.2e-09 67.8 129 34.9
Atru.chr5.74 Acer truncatum HOM05D002770 ORTHO05D003011 3.4e-09 66.2 45 68.9
Dinv29500 Davidia involucrata HOM05D002770 ORTHO05D003011 3.4e-09 66.2 100 36.0
MBI18_g10383_MAGBIO Magnolia biondii HOM05D002770 ORTHO05D003011 7.5e-09 65.1 94 35.1
CANSAT64G0103 Cannabis sativa HOM05D002770 ORTHO05D003011 3.7e-08 62.8 129 31.8
Ca_25152_v3 Cicer arietinum L. HOM05D002770 ORTHO05D003011 6.3e-08 62.0 130 30.0
Oeu002904.1 Olea europaea HOM05D002770 ORTHO05D003011 6.3e-08 62.0 45 60.0
Ca_01993_v3 Cicer arietinum L. HOM05D002770 ORTHO05D003011 1.1e-07 61.2 124 30.6
GSVIVG01017694001 Vitis vinifera HOM05D002770 ORTHO05D003011 1.1e-07 61.2 121 31.4
Actinidia02536 Actinidia chinensis HOM05D002770 ORTHO05D003011 1.4e-07 60.8 108 32.4
Gohir.A12G148900 Gossypium hirsutum HOM05D002770 ORTHO05D003011 1.4e-07 60.8 108 33.3
Hund12259 Selenicereus undatus HOM05D002770 ORTHO05D003011 1.4e-07 60.8 92 34.8
ATR0796G162 Amborella trichopoda HOM05D002770 ORTHO05D003011 4.1e-07 59.3 163 31.3
SGA_v2.0_scaffold77G25255 Striga asiatica HOM05D002770 ORTHO05D003011 5.4e-07 58.9 71 45.1
Medtr2g035830 Medicago truncatula HOM05D002770 ORTHO05D003011 9.1e-07 58.2 106 31.1
THA.LOC104818928 Tarenaya hassleriana HOM05D002770 ORTHO05D003011 9.1e-07 58.2 92 32.6
Lj6C702G8 Lonicera japonica HOM05D002770 ORTHO05D003011 1.2e-06 57.8 103 32.0
CDE09G0451 Ceratophyllum demersum HOM05D002770 ORTHO05D003011 1.6e-06 57.4 150 28.0
Migut.C00319 Erythranthe guttata HOM05D002770 ORTHO05D003011 1.6e-06 57.4 127 30.7
Aqoxy2G02502 Aquilegia oxysepala HOM05D002770 ORTHO05D003011 2.0e-06 57.0 95 36.8
Hma1.2p1_2234F.1_g317660 Hydrangea macrophylla HOM05D002770 ORTHO05D003011 2.0e-06 57.0 102 33.3
MD16G1135300 Malus domestica HOM05D002770 ORTHO05D003011 2.0e-06 57.0 92 34.8
Psat1g149840 Pisum sativum HOM05D002770 ORTHO05D003011 2.0e-06 57.0 103 30.1
Rhsim02G0072000 Rhododendron simsii HOM05D002770 ORTHO05D003011 2.0e-06 57.0 95 36.8
Ah.07g203570 Amaranthus hybridus HOM05D002770 ORTHO05D003011 2.7e-06 56.6 116 29.3
Oeu002201.1 Olea europaea HOM05D002770 ORTHO05D003011 2.7e-06 56.6 117 31.6
RcHm_v2.0_Chr4g0427691 Rosa chinensis HOM05D002770 ORTHO05D003011 2.7e-06 56.6 169 27.2
Cc08_g04620 Coffea canephora HOM05D002770 ORTHO05D003011 3.5e-06 56.2 92 33.7
SMO232G0048 Selaginella moellendorffii HOM05D002770 ORTHO05D003011 3.5e-06 56.2 110 30.9
unitig_0.g29 Utricularia gibba HOM05D002770 ORTHO05D003750 3.5e-06 56.2 136 30.1
CSS0020021 Camellia sinensis var. sinensis HOM05D002770 ORTHO05D003011 5.9e-06 55.5 91 35.2
CSS0034121 Camellia sinensis var. sinensis HOM05D002770 ORTHO05D003011 5.9e-06 55.5 91 35.2
Gorai.010G220000 Gossypium raimondii HOM05D002770 ORTHO05D003011 5.9e-06 55.5 131 29.8
Phvul.009G242200 Phaseolus vulgaris HOM05D002770 ORTHO05D003011 5.9e-06 55.5 130 29.2
Aa31LG5G17520 Aethionema arabicum HOM05D002770 ORTHO05D003011 7.7e-06 55.1 86 36.0
AL3G18130 Arabidopsis lyrata HOM05D002770 ORTHO05D003011 7.7e-06 55.1 92 33.7


User provided reference genes

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