Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN06G3192 Fragaria x ananassa HOM05D005463 ORTHO05D006900 1.1e-207 726.5 377 100.0
FAN03G0244 Fragaria x ananassa HOM05D005463 ORTHO05D006900 1.8e-199 699.1 377 97.3
RcHm_v2.0_Chr1g0314251 Rosa chinensis HOM05D005463 ORTHO05D006900 5.3e-191 671.0 381 91.3
RcHm_v2.0_Chr6g0277781 Rosa chinensis HOM05D005463 ORTHO05D006900 8.8e-186 653.7 381 89.0
FvH4_7g00480 Fragaria vesca HOM05D005463 ORTHO05D006900 1.5e-180 636.3 328 100.0
FAN10G2111 Fragaria x ananassa HOM05D005463 ORTHO05D006900 1.2e-179 633.3 328 99.7
Prupe.2G005900 Prunus persica HOM05D005463 ORTHO05D006900 3.0e-170 602.1 379 84.2
Haze_03251 Corylus avellana HOM05D005463 ORTHO05D006900 2.7e-163 578.9 379 79.4
Cfa010722 Carpinus fangiana HOM05D005463 ORTHO05D006900 5.2e-162 574.7 379 78.6
CiPaw.13G001800 Carya illinoinensis HOM05D005463 ORTHO05D006900 2.4e-159 565.8 380 78.7
CSS0012415 Camellia sinensis var. sinensis HOM05D005463 ORTHO05D006900 4.5e-158 561.6 378 79.4
Dinv43914 Davidia involucrata HOM05D005463 ORTHO05D006900 1.1e-156 557.0 380 77.9
CSS0041052 Camellia sinensis var. sinensis HOM05D005463 ORTHO05D006900 1.5e-156 556.6 378 78.8
QL04p003263 Quercus lobata HOM05D005463 ORTHO05D006900 1.9e-156 556.2 384 77.6
MD07G1002800 Malus domestica HOM05D005463 ORTHO05D006900 4.3e-156 555.1 392 78.3
CAN.G1393.12 Capsicum annuum HOM05D005463 ORTHO05D006900 5.2e-154 548.1 373 76.4
CANSAT11G2548 Cannabis sativa HOM05D005463 ORTHO05D006900 1.2e-153 547.0 389 76.3
TAR369G0415 Trochodendron aralioides HOM05D005463 ORTHO05D006900 5.7e-153 544.7 373 75.6
C04p47660 Brassica napus HOM05D005463 ORTHO05D006900 1.7e-152 543.1 374 76.2
BcaC02g08999 Brassica carinata HOM05D005463 ORTHO05D006900 2.2e-152 542.7 374 76.7
BolC4t26367H Brassica oleracea HOM05D005463 ORTHO05D006900 2.2e-152 542.7 374 76.7
A04p13900 Brassica napus HOM05D005463 ORTHO05D006900 3.7e-152 542.0 375 75.7
BraA04t17055Z Brassica rapa HOM05D005463 ORTHO05D006900 3.7e-152 542.0 375 75.7
ClCG09G003850 Citrullus lanatus HOM05D005463 ORTHO05D006900 4.9e-152 541.6 377 78.0
MELO3C023520.2 Cucumis melo HOM05D005463 ORTHO05D006900 8.3e-152 540.8 377 77.5
TWI77G0271 Tripterygium wilfordii HOM05D005463 ORTHO05D006900 8.3e-152 540.8 372 77.7
BcaB06g27564 Brassica carinata HOM05D005463 ORTHO05D006900 1.8e-151 539.7 374 76.5
Sp7g01080 Schrenkiella parvula HOM05D005463 ORTHO05D006900 4.1e-151 538.5 376 76.1
Thhalv10027799m.g Eutrema salsugineum HOM05D005463 ORTHO05D006900 2.0e-150 536.2 376 75.8
CsaV3_7G031380 Cucumis sativus L. HOM05D005463 ORTHO05D006900 4.6e-150 535.0 377 76.4
Solyc01g086650.3 Solanum lycopersicum HOM05D005463 ORTHO05D006900 5.9e-150 534.6 373 75.3
Sopen01g033670 Solanum pennellii HOM05D005463 ORTHO05D006900 5.9e-150 534.6 373 75.3
BcaB02g07924 Brassica carinata HOM05D005463 ORTHO05D006900 1.0e-149 533.9 377 75.9
AL7G48760 Arabidopsis lyrata HOM05D005463 ORTHO05D006900 1.3e-149 533.5 375 76.5
AT5G40850 Arabidopsis thaliana HOM05D005463 ORTHO05D006900 1.3e-149 533.5 375 75.7
Ciclev10031826m.g Citrus clementina HOM05D005463 ORTHO05D006900 2.3e-149 532.7 383 75.2
Carub.0007s3465 Capsella rubella HOM05D005463 ORTHO05D006900 3.0e-149 532.3 373 76.1
TAR623G0821 Trochodendron aralioides HOM05D005463 ORTHO05D006900 6.6e-149 531.2 377 74.0
PGSC0003DMG400025254 Solanum tuberosum HOM05D005463 ORTHO05D006900 8.6e-149 530.8 373 74.8
THA.LOC104819056 Tarenaya hassleriana HOM05D005463 ORTHO05D006900 1.5e-148 530.0 384 73.4
Lsat_1_v5_gn_4_46300 Lactuca sativa HOM05D005463 ORTHO05D006900 3.3e-148 528.9 371 74.9
Manes.10G148700 Manihot esculenta HOM05D005463 ORTHO05D006900 4.3e-148 528.5 395 73.9
Sabra16G0135300 Salix brachista HOM05D005463 ORTHO05D006900 4.3e-148 528.5 380 73.7
Lalb_Chr25g0283441 Lupinus albus HOM05D005463 ORTHO05D006900 2.1e-147 526.2 381 74.3
Potri.001G226900 Populus trichocarpa HOM05D005463 ORTHO05D006900 2.1e-147 526.2 380 73.2
Eucgr.H00541 Eucalyptus grandis HOM05D005463 ORTHO05D006900 2.8e-147 525.8 383 73.6
Nitab4.5_0006866g0010 Nicotiana tabacum HOM05D005463 ORTHO05D006900 4.7e-147 525.0 373 74.5
Nitab4.5_0002239g0050 Nicotiana tabacum HOM05D005463 ORTHO05D006900 6.2e-147 524.6 373 74.8
Gohir.D10G064800 Gossypium hirsutum HOM05D005463 ORTHO05D006900 5.2e-146 521.5 371 75.5
Thecc.01G415300 Theobroma cacao HOM05D005463 ORTHO05D006900 8.9e-146 520.8 374 75.7
Rhsim07G0052500 Rhododendron simsii HOM05D005463 ORTHO05D006900 2.2e-144 516.2 404 72.3
Gorai.011G068800 Gossypium raimondii HOM05D005463 ORTHO05D006900 3.7e-144 515.4 372 74.7
DCAR_006305 Daucus carota HOM05D005463 ORTHO05D006900 1.1e-143 513.8 371 74.9
Migut.B01346 Erythranthe guttata HOM05D005463 ORTHO05D006900 1.4e-143 513.5 374 73.3
Sed0008391 Sechium edule HOM05D005463 ORTHO05D006900 1.9e-143 513.1 364 76.4
Cc02_g27320 Coffea canephora HOM05D005463 ORTHO05D006900 4.1e-143 511.9 378 73.8
CARHR213670 Cardamine hirsuta HOM05D005463 ORTHO05D006900 9.2e-143 510.8 382 73.3
VMungo1080G0018 Vigna mungo HOM05D005463 ORTHO05D006900 1.2e-142 510.4 373 73.5
vmacro13633 Vaccinium macrocarpon HOM05D005463 ORTHO05D006900 4.6e-142 508.4 377 73.5
Duzib114G0804 Durio zibethinus HOM05D005463 ORTHO05D006900 3.0e-141 505.8 347 77.2
Oeu047540.1 Olea europaea HOM05D005463 ORTHO05D006900 6.6e-141 504.6 389 70.4
Phvul.005G038200 Phaseolus vulgaris HOM05D005463 ORTHO05D006900 8.6e-141 504.2 373 72.9
Nn7g36051 Nelumbo nucifera HOM05D005463 ORTHO05D006900 1.5e-140 503.4 355 74.9
PGR083G1038 Punica granatum HOM05D005463 ORTHO05D006900 1.5e-140 503.4 392 72.4
SGA_v2.0_scaffold4G02241 Striga asiatica HOM05D005463 ORTHO05D006900 1.9e-140 503.1 381 72.2
Lj7A567T29 Lonicera japonica HOM05D005463 ORTHO05D006900 4.3e-140 501.9 377 72.1
PSO541G2837 Papaver somniferum HOM05D005463 ORTHO05D006900 1.2e-139 500.4 366 74.6
Peaxi162Scf00058g00512 Petunia axillaris HOM05D005463 ORTHO05D006900 1.2e-139 500.4 373 72.1
Glyma.08G150800 Glycine max HOM05D005463 ORTHO05D006900 4.7e-139 498.4 378 71.4
Lj3g0018047 Lotus japonicus HOM05D005463 ORTHO05D006900 1.4e-138 496.9 326 77.9
MBI07_g21780_MAGBIO Magnolia biondii HOM05D005463 ORTHO05D006900 1.4e-138 496.9 385 71.2
MBI19_g42082_MAGBIO Magnolia biondii HOM05D005463 ORTHO05D006900 1.4e-138 496.9 385 70.9
Glyma.15G270200 Glycine max HOM05D005463 ORTHO05D006900 1.8e-138 496.5 337 76.9
Aqoxy2G00060 Aquilegia oxysepala HOM05D005463 ORTHO05D006900 3.1e-138 495.7 374 73.5
Psat5g207280 Pisum sativum HOM05D005463 ORTHO05D006900 4.0e-138 495.4 369 71.8
Aa31sc48G90 Aethionema arabicum HOM05D005463 ORTHO05D006900 4.4e-137 491.9 379 70.2
Actinidia32326 Actinidia chinensis HOM05D005463 ORTHO05D006900 2.9e-136 489.2 329 77.8
Medtr7g034345 Medicago truncatula HOM05D005463 ORTHO05D006900 3.7e-136 488.8 362 72.4
TPR.G12169 Trifolium pratense HOM05D005463 ORTHO05D006900 3.7e-136 488.8 347 74.6
Duzib138G0896 Durio zibethinus HOM05D005463 ORTHO05D006900 4.6e-134 481.9 372 70.7
Ah.05g166840 Amaranthus hybridus HOM05D005463 ORTHO05D006900 1.7e-133 479.9 379 69.1
Ca_22203_v3 Cicer arietinum L. HOM05D005463 ORTHO05D006900 2.3e-133 479.6 384 69.8
SGA_v2.0_scaffold95G28785 Striga asiatica HOM05D005463 ORTHO05D006900 3.0e-133 479.2 418 64.6
AUR62034961 Chenopodium quinoa HOM05D005463 ORTHO05D006900 6.6e-133 478.0 385 66.8
TWI74G0716 Tripterygium wilfordii HOM05D005463 ORTHO05D006900 6.6e-133 478.0 327 78.0
EL10Ac1g02324 Beta vulgaris HOM05D005463 ORTHO05D006900 1.6e-131 473.4 392 66.6
GSVIVG01032030001 Vitis vinifera HOM05D005463 ORTHO05D006900 2.1e-131 473.0 281 86.8
Sc20g0006350 Simmondsia chinensis HOM05D005463 ORTHO05D006900 2.8e-131 472.6 382 68.3
CDE09G0814 Ceratophyllum demersum HOM05D005463 ORTHO05D006900 1.8e-130 469.9 370 68.9
HanXRQChr16g0520501 Helianthus annuus HOM05D005463 ORTHO05D006900 2.3e-130 469.5 371 69.8
COL.COLO4_23908 Corchorus olitorius HOM05D000259 ORTHO05D000155 3.1e-130 469.2 351 72.6
Hund11459 Selenicereus undatus HOM05D005463 ORTHO05D006900 1.5e-129 466.8 358 69.8
ECA234G3252 Erigeron canadensis HOM05D005463 ORTHO05D006900 4.4e-129 465.3 375 68.8
AUR62035771 Chenopodium quinoa HOM05D005463 ORTHO05D006900 1.7e-128 463.4 363 67.8
ATR0709G016 Amborella trichopoda HOM05D005463 ORTHO05D006900 2.4e-127 459.5 356 69.4
MBI19_g47932_MAGBIO Magnolia biondii HOM05D005463 ORTHO05D006900 4.1e-127 458.8 385 67.5
Manes.07G002600 Manihot esculenta HOM05D005463 ORTHO05D006900 7.8e-126 454.5 329 75.1
Zm00001eb159150 Zea mays HOM05D005463 ORTHO05D006900 9.6e-124 447.6 324 72.8
SalBow4G1191 Salvia bowleyana HOM05D005463 ORTHO05D006900 3.6e-123 445.7 331 72.2
arahy.Tifrunner.gnm1.ann1.35ND81 Arachis hypogaea HOM05D005463 ORTHO05D006900 1.1e-122 444.1 290 80.7
Cpa.g.sc1133.2 Carica papaya HOM05D005463 ORTHO05D006900 1.9e-116 423.3 378 63.5
Zm00001eb358930 Zea mays HOM05D005463 ORTHO05D006900 1.1e-114 417.5 331 69.5
HPP92_020287 Vanilla planifolia HOM05D005463 ORTHO05D006900 2.6e-113 412.9 290 75.2
Mapoly0087s0054 Marchantia polymorpha HOM05D005463 ORTHO05D006900 4.9e-112 408.7 294 72.1
Pp3c10_8730 Physcomitrium patens HOM05D005463 ORTHO05D006900 4.6e-110 402.1 293 70.3
SMO174G0240 Selaginella moellendorffii HOM05D005463 ORTHO05D006900 1.0e-109 401.0 324 66.0
Medtr3g026780 Medicago truncatula HOM05D005463 ORTHO05D006900 1.6e-107 393.7 236 84.7
CBR_g4488 Chara braunii HOM05D005463 ORTHO05D006900 4.6e-102 375.6 280 67.5
ATR1100G030 Amborella trichopoda HOM05D005463 ORTHO05D006900 2.2e-96 356.7 327 60.2
unitig_61.g26444 Utricularia gibba HOM05D005463 ORTHO05D006900 3.8e-96 355.9 286 67.5
Os01g0631200 Oryza sativa ssp. japonica HOM05D005463 ORTHO05D006900 5.7e-92 342.0 200 85.0
PRCOL_00005728 Prasinoderma coloniale HOM05D005463 ORTHO05D006900 6.3e-83 312.0 248 62.9
Cre09.g396401 Chlamydomonas reinhardtii HOM05D005463 ORTHO05D006900 3.4e-81 306.2 271 60.5
MBI10_g23170_MAGBIO Magnolia biondii HOM05D005463 ORTHO05D006900 1.9e-79 300.4 229 69.9
TPR.G33976 Trifolium pratense HOM05D005463 ORTHO05D006900 5.1e-77 292.4 282 58.2
MCO12G109 Micromonas commoda HOM05D005463 ORTHO05D006900 9.7e-76 288.1 254 56.7
Gohir.A10G063300 Gossypium hirsutum HOM05D005463 ORTHO05D006900 5.3e-74 282.3 243 66.7
Dinv43913 Davidia involucrata HOM05D005463 ORTHO05D006900 1.3e-72 277.7 214 72.0
RcHm_v2.0_Chr4g0408791 Rosa chinensis HOM05D005463 ORTHO05D006900 7.2e-71 271.9 160 90.6
SEGI_24059 Sequoiadendron giganteum HOM05D005463 ORTHO05D006900 1.7e-67 260.8 213 63.8
Hma1.2p1_1089F.1_g255720 Hydrangea macrophylla HOM05D005463 ORTHO05D006900 5.7e-52 209.1 193 63.2
AagrBONN_evm.TU.Sc2ySwM_344.3224 Anthoceros agrestis HOM05D005463 ORTHO05D006900 3.7e-51 206.5 203 56.7
Oeu010361.1 Olea europaea HOM05D005463 ORTHO05D006900 2.4e-50 203.8 195 59.5
Prupe.I005100 Prunus persica HOM05D005463 ORTHO05D006900 9.1e-50 201.8 118 85.6
RcHm_v2.0_Chr6g0260851 Rosa chinensis HOM05D005463 ORTHO05D006900 9.1e-50 201.8 137 80.3
arahy.Tifrunner.gnm1.ann1.UWT5DF Arachis hypogaea HOM05D005463 ORTHO05D006900 7.7e-49 198.7 109 90.8
MSTRG.17019 Avicennia marina HOM05D005463 ORTHO05D006900 2.9e-48 196.8 188 61.2
MSTRG.17060 Avicennia marina HOM05D005463 ORTHO05D006900 1.9e-47 194.1 185 61.6
SEGI_02284 Sequoiadendron giganteum HOM05D005463 ORTHO05D006900 1.0e-37 161.8 114 69.3
RcHm_v2.0_Chr4g0408811 Rosa chinensis HOM05D005463 ORTHO05D006900 5.7e-36 156.0 114 78.1
Cre12.g538650 Chlamydomonas reinhardtii HOM05D005463 ORTHO05D044100 2.5e-31 140.6 244 36.5
Cfa024173 Carpinus fangiana HOM05D005463 ORTHO05D006900 1.8e-29 134.4 245 36.3
Nn3g19661 Nelumbo nucifera HOM05D005463 ORTHO05D006900 3.2e-26 123.6 187 46.0
Haze_27481 Corylus avellana HOM05D005463 ORTHO05D006900 8.6e-24 115.5 164 40.2
ATR0709G040 Amborella trichopoda HOM05D005463 ORTHO05D006900 1.1e-23 115.2 143 47.6
MCO11G851 Micromonas commoda HOM05D005463 ORTHO05D044100 2.5e-23 114.0 241 32.0
RcHm_v2.0_Chr1g0375041 Rosa chinensis HOM05D005463 ORTHO05D006900 3.7e-19 100.1 50 98.0
MBI14_g30707_MAGBIO Magnolia biondii HOM05D005463 ORTHO05D006900 5.4e-18 96.3 65 70.8
CAN.G762.7 Capsicum annuum HOM05D005463 ORTHO05D006900 7.1e-18 95.9 80 66.2
CAN.G244.9 Capsicum annuum HOM05D005463 ORTHO05D006900 1.4e-10 71.6 89 46.1


User provided reference genes

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