Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN06G3089 Fragaria x ananassa HOM05D001925 ORTHO05D004257 1.5e-231 805.8 415 100.0
FAN06G4809 Fragaria x ananassa HOM05D001925 ORTHO05D004257 1.3e-230 802.7 415 99.3
FAN10G1179 Fragaria x ananassa HOM05D001925 ORTHO05D004257 1.4e-221 772.7 415 96.1
FAN10G2559 Fragaria x ananassa HOM05D001925 ORTHO05D004257 2.1e-220 768.8 415 95.9
FAN03G0610 Fragaria x ananassa HOM05D001925 ORTHO05D004257 4.5e-199 698.0 415 89.4
FAN01G0375 Fragaria x ananassa HOM05D001925 ORTHO05D005701 1.7e-182 642.9 385 88.3
FvH4_7g14520 Fragaria vesca HOM05D001925 ORTHO05D004257 3.2e-173 612.1 315 99.4
RcHm_v2.0_Chr1g0355951 Rosa chinensis HOM05D001925 ORTHO05D004257 2.6e-146 522.7 315 83.5
Prupe.2G172100 Prunus persica HOM05D001925 ORTHO05D004257 4.6e-111 405.6 315 67.6
MD01G1065100 Malus domestica HOM05D001925 ORTHO05D004257 1.3e-100 370.9 329 61.4
Dinv32493 Davidia involucrata HOM05D001925 ORTHO05D004257 1.5e-98 364.0 318 61.9
CSS0032978 Camellia sinensis var. sinensis HOM05D001925 ORTHO05D004257 2.0e-98 363.6 316 60.1
Thecc.01G357700 Theobroma cacao HOM05D001925 ORTHO05D004257 8.4e-97 358.2 312 60.9
MD07G1135300 Malus domestica HOM05D001925 ORTHO05D004257 9.3e-96 354.8 331 60.4
Atru.chr5.510 Acer truncatum HOM05D001925 ORTHO05D004257 3.5e-95 352.8 316 57.9
Haze_15511 Corylus avellana HOM05D001925 ORTHO05D005701 3.0e-94 349.7 315 60.0
Duzib133G0433 Durio zibethinus HOM05D001925 ORTHO05D004257 3.9e-94 349.4 316 58.2
Duzib138G1880 Durio zibethinus HOM05D001925 ORTHO05D004257 5.1e-94 349.0 317 59.3
COL.COLO4_12725 Corchorus olitorius HOM05D001925 ORTHO05D005701 2.8e-92 343.2 317 58.0
CANSAT21G1319 Cannabis sativa HOM05D001925 ORTHO05D004257 6.2e-92 342.0 312 60.3
vmacro20933 Vaccinium macrocarpon HOM05D001925 ORTHO05D004257 2.4e-91 340.1 317 58.7
QL04p053608 Quercus lobata HOM05D001925 ORTHO05D004257 5.3e-91 339.0 283 63.3
Manes.01G255700 Manihot esculenta HOM05D001925 ORTHO05D004257 1.2e-90 337.8 315 58.1
Gohir.A11G089800 Gossypium hirsutum HOM05D001925 ORTHO05D004257 1.3e-86 324.3 318 57.5
Gorai.007G100500 Gossypium raimondii HOM05D001925 ORTHO05D004257 5.1e-86 322.4 314 58.0
TAR629G3070 Trochodendron aralioides HOM05D001925 ORTHO05D004257 5.1e-86 322.4 319 54.5
TWI23G0808 Tripterygium wilfordii HOM05D001925 ORTHO05D004257 6.7e-86 322.0 316 53.8
Hma1.2p1_0780F.1_g216780 Hydrangea macrophylla HOM05D001925 ORTHO05D004257 1.9e-85 320.5 336 52.4
VMungo1383G2450 Vigna mungo HOM05D001925 ORTHO05D004257 1.9e-85 320.5 319 53.9
Cfa003907 Carpinus fangiana HOM05D001925 ORTHO05D005701 4.3e-85 319.3 286 58.4
Gohir.D11G094100 Gossypium hirsutum HOM05D001925 ORTHO05D004257 4.3e-85 319.3 314 58.0
Manes.05G033200 Manihot esculenta HOM05D001925 ORTHO05D004257 7.4e-85 318.5 316 56.0
TAR375G1105 Trochodendron aralioides HOM05D001925 ORTHO05D004257 9.6e-85 318.2 320 53.4
Actinidia02837 Actinidia chinensis HOM05D001925 ORTHO05D004257 1.1e-83 314.7 319 55.8
Glyma.18G234100 Glycine max HOM05D001925 ORTHO05D004257 1.1e-83 314.7 318 53.8
Phvul.008G061700 Phaseolus vulgaris HOM05D001925 ORTHO05D004257 1.4e-83 314.3 319 53.9
Sabra14G0062300 Salix brachista HOM05D001925 ORTHO05D004257 4.0e-83 312.8 316 56.0
CiPaw.02G032000 Carya illinoinensis HOM05D001925 ORTHO05D004257 5.3e-83 312.4 284 57.0
Potri.014G086000 Populus trichocarpa HOM05D001925 ORTHO05D004257 9.0e-83 311.6 316 55.4
Nn6g33385 Nelumbo nucifera HOM05D001925 ORTHO05D004257 1.5e-82 310.8 320 53.1
Glyma.09G258600 Glycine max HOM05D001925 ORTHO05D004257 4.5e-82 309.3 316 52.8
Nn1g01562 Nelumbo nucifera HOM05D001925 ORTHO05D004257 1.0e-81 308.1 321 53.3
TAR374G1741 Trochodendron aralioides HOM05D001925 ORTHO05D004257 1.1e-80 304.7 321 52.0
Ca_07929_v3 Cicer arietinum L. HOM05D001925 ORTHO05D004257 3.2e-80 303.1 318 52.2
Ciclev10021244m.g Citrus clementina HOM05D001925 ORTHO05D004257 4.2e-80 302.8 319 53.0
Cc02_g38170 Coffea canephora HOM05D001925 ORTHO05D004257 5.5e-80 302.4 319 51.7
Hma1.2p1_0780F.1_g216750 Hydrangea macrophylla HOM05D001925 ORTHO05D004257 9.3e-80 301.6 338 50.6
Potri.002G160700 Populus trichocarpa HOM05D001925 ORTHO05D004257 1.2e-79 301.2 316 55.7
arahy.Tifrunner.gnm1.ann1.E5DFEG Arachis hypogaea HOM05D001925 ORTHO05D004257 4.6e-79 299.3 315 52.7
arahy.Tifrunner.gnm1.ann1.IGP217 Arachis hypogaea HOM05D001925 ORTHO05D004257 7.9e-79 298.5 315 53.0
Cpa.g.sc11.19 Carica papaya HOM05D001925 ORTHO05D004257 2.3e-78 297.0 321 52.0
CiPaw.01G062900 Carya illinoinensis HOM05D001925 ORTHO05D004257 2.3e-78 297.0 317 53.3
Peaxi162Scf00020g00730 Petunia axillaris HOM05D001925 ORTHO05D004257 5.1e-78 295.8 315 52.4
Sabra02G0127500 Salix brachista HOM05D001925 ORTHO05D004257 1.1e-77 294.7 315 54.3
Lalb_Chr23g0275821 Lupinus albus HOM05D001925 ORTHO05D004257 1.5e-77 294.3 316 51.6
Lj1g0025308 Lotus japonicus HOM05D001925 ORTHO05D004257 3.3e-77 293.1 318 53.1
TWI59G0730 Tripterygium wilfordii HOM05D001925 ORTHO05D004257 9.6e-77 291.6 285 53.3
ClCG05G001470 Citrullus lanatus HOM05D001925 ORTHO05D004257 1.5e-74 284.3 319 54.5
PGR031G2850 Punica granatum HOM05D001925 ORTHO05D004257 2.0e-74 283.9 315 51.7
TPR.G37799 Trifolium pratense HOM05D001925 ORTHO05D004257 2.0e-74 283.9 318 49.4
SalBow8G4919 Salvia bowleyana HOM05D001925 ORTHO05D004257 5.9e-74 282.3 316 48.4
PGSC0003DMG400000175 Solanum tuberosum HOM05D001925 ORTHO05D004257 5.9e-74 282.3 317 50.5
Lj9A584T67 Lonicera japonica HOM05D001925 ORTHO05D004257 1.0e-73 281.6 309 49.2
Medtr7g077860 Medicago truncatula HOM05D001925 ORTHO05D004257 2.2e-73 280.4 320 50.0
MSTRG.14225 Avicennia marina HOM05D001925 ORTHO05D004257 3.8e-73 279.6 316 50.0
Eucgr.D02304 Eucalyptus grandis HOM05D001925 ORTHO05D004257 3.8e-73 279.6 317 53.0
CsaV3_3G008850 Cucumis sativus L. HOM05D001925 ORTHO05D004257 1.4e-72 277.7 317 54.3
Migut.M00740 Erythranthe guttata HOM05D001925 ORTHO05D004257 1.4e-72 277.7 317 49.5
MELO3C006104.2 Cucumis melo HOM05D001925 ORTHO05D004257 1.9e-72 277.3 313 54.3
Rhsim07G0013800 Rhododendron simsii HOM05D001925 ORTHO05D004257 2.5e-72 276.9 284 52.5
Actinidia10041 Actinidia chinensis HOM05D001925 ORTHO05D004257 5.5e-72 275.8 284 54.6
MBI18_g02843_MAGBIO Magnolia biondii HOM05D001925 ORTHO05D004257 7.2e-72 275.4 322 49.1
Sed0006621 Sechium edule HOM05D001925 ORTHO05D004257 4.6e-71 272.7 313 52.4
Oeu031215.1 Olea europaea HOM05D001925 ORTHO05D004257 7.9e-71 271.9 316 49.4
GSVIVG01026948001 Vitis vinifera HOM05D001925 ORTHO05D004257 1.1e-67 261.5 317 50.2
CAN.G78.91 Capsicum annuum HOM05D001925 ORTHO05D004257 5.3e-67 259.2 317 47.0
Sed0020685 Sechium edule HOM05D001925 ORTHO05D004257 1.2e-66 258.1 312 52.9
PGR042G2528 Punica granatum HOM05D001925 ORTHO05D004257 5.9e-66 255.8 324 46.6
Nitab4.5_0000583g0190 Nicotiana tabacum HOM05D001925 ORTHO05D004257 5.0e-65 252.7 317 48.9
Ah.05g180510 Amaranthus hybridus HOM05D001925 ORTHO05D004257 8.5e-65 251.9 323 46.1
Sopen01g038550 Solanum pennellii HOM05D001925 ORTHO05D004257 1.4e-64 251.1 315 45.4
Nitab4.5_0006018g0030 Nicotiana tabacum HOM05D001925 ORTHO05D004257 2.5e-64 250.4 318 46.2
THA.LOC104825845 Tarenaya hassleriana HOM05D001925 ORTHO05D004257 2.5e-64 250.4 316 46.2
Aqoxy7G00278 Aquilegia oxysepala HOM05D001925 ORTHO05D004257 9.4e-64 248.4 321 47.0
Aa31LG5G590 Aethionema arabicum HOM05D001925 ORTHO05D004257 1.2e-63 248.1 317 47.0
Psat3g108000 Pisum sativum HOM05D001925 ORTHO05D004257 2.1e-63 247.3 281 49.5
Nitab4.5_0008206g0010 Nicotiana tabacum HOM05D001925 ORTHO05D004257 3.9e-62 243.0 317 43.8
Rhsim01G0159000 Rhododendron simsii HOM05D001925 ORTHO05D004257 6.7e-62 242.3 287 49.8
Thhalv10029186m.g Eutrema salsugineum HOM05D001925 ORTHO05D004257 8.8e-62 241.9 324 45.4
DCAR_007445 Daucus carota HOM05D001925 ORTHO05D004257 1.1e-61 241.5 278 49.6
Oeu005388.3 Olea europaea HOM05D001925 ORTHO05D004257 2.0e-61 240.7 308 46.8
Nitab4.5_0000386g0060 Nicotiana tabacum HOM05D001925 ORTHO05D004257 3.7e-60 236.5 316 43.7
Sp6g00430 Schrenkiella parvula HOM05D001925 ORTHO05D004257 4.1e-59 233.0 320 44.7
DCAR_025195 Daucus carota HOM05D001925 ORTHO05D004257 2.0e-58 230.7 316 43.7
AUR62022581 Chenopodium quinoa HOM05D001925 ORTHO05D004257 5.9e-58 229.2 335 42.7
PSO478G2649 Papaver somniferum HOM05D001925 ORTHO05D004257 7.7e-58 228.8 292 44.9
Sc26g0000880 Simmondsia chinensis HOM05D001925 ORTHO05D004257 2.2e-57 227.3 302 45.0
Peaxi162Scf00008g02423 Petunia axillaris HOM05D001925 ORTHO05D004257 2.5e-56 223.8 317 41.6
THA.LOC104817027 Tarenaya hassleriana HOM05D001925 ORTHO05D004257 2.5e-56 223.8 278 44.2
TAR636G0324 Trochodendron aralioides HOM05D001925 ORTHO05D004257 9.4e-56 221.9 297 45.8
Solyc10g012420.3 Solanum lycopersicum HOM05D001925 ORTHO05D004257 2.1e-55 220.7 316 42.4
PSO782G1204 Papaver somniferum HOM05D001925 ORTHO05D004257 2.3e-54 217.2 292 43.8
arahy.Tifrunner.gnm1.ann1.2X3TQS Arachis hypogaea HOM05D001925 ORTHO05D004257 3.0e-54 216.9 318 42.8
Sopen10g006250 Solanum pennellii HOM05D001925 ORTHO05D004257 6.7e-54 215.7 316 41.5
Hund27265 Selenicereus undatus HOM05D001925 ORTHO05D004257 1.5e-53 214.5 380 40.8
Eucgr.E00120 Eucalyptus grandis HOM05D001925 ORTHO05D004257 2.6e-53 213.8 282 44.7
PSO063G1799 Papaver somniferum HOM05D001925 ORTHO05D004257 9.7e-53 211.8 305 41.6
SalBow3G4075 Salvia bowleyana HOM05D001925 ORTHO05D004257 1.3e-52 211.5 315 41.0
EL10Ac1g00401 Beta vulgaris HOM05D001925 ORTHO05D004257 1.7e-52 211.1 252 46.8
AUR62004372 Chenopodium quinoa HOM05D001925 ORTHO05D004257 1.7e-52 211.1 341 40.5
Lj6A572T61 Lonicera japonica HOM05D001925 ORTHO05D004257 4.8e-52 209.5 245 47.8
PSO017G3573 Papaver somniferum HOM05D001925 ORTHO05D004257 2.4e-51 207.2 305 41.6
AT4G00355 Arabidopsis thaliana HOM05D001925 ORTHO05D004257 3.1e-51 206.8 316 42.1
Dinv43827 Davidia involucrata HOM05D001925 ORTHO05D005701 3.1e-51 206.8 314 45.9
ECA236G3632 Erigeron canadensis HOM05D001925 ORTHO05D004257 2.6e-50 203.8 316 40.2
CAN.G116.9 Capsicum annuum HOM05D001925 ORTHO05D004257 3.5e-50 203.4 317 40.7
AL6G53090 Arabidopsis lyrata HOM05D001925 ORTHO05D004257 1.0e-49 201.8 320 42.8
Oeu061351.3 Olea europaea HOM05D001925 ORTHO05D004257 2.2e-49 200.7 295 41.0
CARHR248450 Cardamine hirsuta HOM05D001925 ORTHO05D004257 2.9e-49 200.3 312 44.6
Sp4g28050 Schrenkiella parvula HOM05D001925 ORTHO05D004257 5.0e-49 199.5 318 41.8
THA.LOC104817300 Tarenaya hassleriana HOM05D001925 ORTHO05D004257 8.5e-49 198.7 301 40.5
unitig_749.g13536 Utricularia gibba HOM05D001925 ORTHO05D004257 8.5e-49 198.7 319 40.4
Carub.0006s3688 Capsella rubella HOM05D001925 ORTHO05D004257 1.5e-48 198.0 315 42.2
Sc23g0002810 Simmondsia chinensis HOM05D001925 ORTHO05D004257 1.5e-48 198.0 276 42.4
Thhalv10001583m.g Eutrema salsugineum HOM05D001925 ORTHO05D004257 9.4e-48 195.3 322 40.7
AL4G45210 Arabidopsis lyrata HOM05D001925 ORTHO05D004257 1.2e-47 194.9 318 41.5
AT2G45980 Arabidopsis thaliana HOM05D001925 ORTHO05D004257 1.6e-47 194.5 318 41.5
Carub.0004s2868 Capsella rubella HOM05D001925 ORTHO05D004257 3.6e-47 193.4 318 40.3
CARHR141250 Cardamine hirsuta HOM05D001925 ORTHO05D004257 6.7e-46 189.1 319 39.8
PGSC0003DMG400006504 Solanum tuberosum HOM05D001925 ORTHO05D004257 2.6e-45 187.2 276 41.7
ATR0680G064 Amborella trichopoda HOM05D001925 ORTHO05D004257 1.3e-44 184.9 309 41.4
Aa31LG1G27390 Aethionema arabicum HOM05D001925 ORTHO05D004257 4.1e-43 179.9 312 40.4
HanXRQChr13g0426611 Helianthus annuus HOM05D001925 ORTHO05D004257 4.1e-43 179.9 269 40.5
Medtr2g027720 Medicago truncatula HOM05D001925 ORTHO05D004257 7.0e-43 179.1 252 43.3
A05p05970 Brassica napus HOM05D001925 ORTHO05D004257 1.6e-42 177.9 309 38.8
BraA05t19560Z Brassica rapa HOM05D001925 ORTHO05D004257 1.6e-42 177.9 316 38.9
THA.LOC104802035 Tarenaya hassleriana HOM05D001925 ORTHO05D004257 3.5e-42 176.8 307 36.2
C04p06900 Brassica napus HOM05D001925 ORTHO05D004257 1.7e-41 174.5 317 37.5
BolC4t22311H Brassica oleracea HOM05D001925 ORTHO05D004257 1.7e-41 174.5 317 37.5
Actinidia20895 Actinidia chinensis HOM05D001925 ORTHO05D005701 3.8e-41 173.3 197 50.3
BcaB01g02169 Brassica carinata HOM05D001925 ORTHO05D004257 1.6e-39 167.9 326 38.3
Lalb_Chr11g0072911 Lupinus albus HOM05D001925 ORTHO05D004257 1.8e-38 164.5 314 37.9
Lsat_1_v5_gn_7_4301 Lactuca sativa HOM05D001925 ORTHO05D004257 9.8e-37 158.7 365 32.9
BcaC01g06884 Brassica carinata HOM05D001925 ORTHO05D004257 3.7e-36 156.8 331 38.7
CDE08G0634 Ceratophyllum demersum HOM05D001925 ORTHO05D004257 1.1e-35 155.2 311 34.1
A03p32220 Brassica napus HOM05D001925 ORTHO05D004257 1.8e-35 154.5 323 37.8
BraA03t12392Z Brassica rapa HOM05D001925 ORTHO05D004257 1.8e-35 154.5 323 37.8
BolC3t16197H Brassica oleracea HOM05D001925 ORTHO05D004257 2.4e-35 154.1 326 37.1
C04p71970 Brassica napus HOM05D001925 ORTHO05D004257 3.1e-35 153.7 309 37.2
MBI17_g42624_MAGBIO Magnolia biondii HOM05D001925 ORTHO05D004257 5.4e-35 152.9 192 44.3
C03p39260 Brassica napus HOM05D001925 ORTHO05D004257 1.2e-34 151.8 323 37.5
A04p34180 Brassica napus HOM05D001925 ORTHO05D004257 3.5e-34 150.2 310 36.5
BraA04t18879Z Brassica rapa HOM05D001925 ORTHO05D004257 3.5e-34 150.2 310 36.5
Migut.B01767 Erythranthe guttata HOM05D001925 ORTHO05D004257 6.5e-33 146.0 321 33.6
SGA_v2.0_scaffold55G19707 Striga asiatica HOM05D001925 ORTHO05D004257 3.6e-31 140.2 283 36.7
unitig_8.g3798 Utricularia gibba HOM05D001925 ORTHO05D004257 2.3e-30 137.5 312 34.0
HPP92_014720 Vanilla planifolia HOM05D001925 ORTHO05D004257 4.4e-29 133.3 311 33.8
BolC4t28695H Brassica oleracea HOM05D001925 ORTHO05D004257 5.7e-29 132.9 314 33.8
HPP92_025783 Vanilla planifolia HOM05D001925 ORTHO05D004257 7.5e-29 132.5 351 31.6
CDE05G2831 Ceratophyllum demersum HOM05D001925 ORTHO05D004257 1.3e-28 131.7 256 34.4
HanXRQChr04g0121161 Helianthus annuus HOM05D001925 ORTHO05D004257 1.5e-24 118.2 265 33.2
MBI17_g35262_MAGBIO Magnolia biondii HOM05D001925 ORTHO05D004257 5.6e-24 116.3 103 55.3
Os04g0165300 Oryza sativa ssp. japonica HOM05D001925 ORTHO05D004257 5.6e-24 116.3 296 33.4
SEGI_07880 Sequoiadendron giganteum HOM05D001925 ORTHO05D004257 5.6e-24 116.3 360 30.8
Os02g0821900 Oryza sativa ssp. japonica HOM05D001925 ORTHO05D004257 2.1e-23 114.4 313 29.4
Zm00001eb318800 Zea mays HOM05D001925 ORTHO05D004257 4.7e-23 113.2 278 33.1
Zm00001eb103050 Zea mays HOM05D001925 ORTHO05D004257 2.3e-22 110.9 280 33.9
SGA_v2.0_scaffold4G02300 Striga asiatica HOM05D001925 ORTHO05D004257 3.5e-18 97.1 313 28.8
Zm00001eb191080 Zea mays HOM05D001925 ORTHO05D004257 5.0e-17 93.2 301 28.2
SGA_v2.0_scaffold95G28831 Striga asiatica HOM05D001925 ORTHO05D004257 1.6e-15 88.2 271 29.2
Lj6P578T28 Lonicera japonica HOM05D001925 ORTHO05D004257 1.4e-14 85.1 150 36.0
Zm00001eb305930 Zea mays HOM05D001925 ORTHO05D004257 3.4e-13 80.5 310 23.2
Lj7P510T18 Lonicera japonica HOM05D001925 ORTHO05D004257 5.8e-13 79.7 148 35.8
C04p06870 Brassica napus HOM05D001925 ORTHO05D004257 1.4e-11 75.1 67 56.7
BolC4t22309H Brassica oleracea HOM05D001925 ORTHO05D004257 1.4e-11 75.1 67 56.7
Mapoly0022s0094 Marchantia polymorpha HOM05D001925 ORTHO05D004257 1.9e-11 74.7 84 45.2
Oeu051126.2 Olea europaea HOM05D001925 ORTHO05D004257 2.4e-11 74.3 139 36.0
A05p05940 Brassica napus HOM05D001925 ORTHO05D004257 1.2e-10 72.0 65 53.8
BraA05t19557Z Brassica rapa HOM05D001925 ORTHO05D004257 1.2e-10 72.0 65 53.8
Zm00001eb087910 Zea mays HOM05D001925 ORTHO05D004257 1.6e-10 71.6 125 32.8
Zm00001eb415260 Zea mays HOM05D001925 ORTHO05D004257 1.6e-10 71.6 125 32.8
SMO112G0035 Selaginella moellendorffii HOM05D001925 ORTHO05D004257 3.9e-09 67.0 80 41.2
Lj6C572T1 Lonicera japonica HOM05D001925 ORTHO05D004257 6.6e-09 66.2 52 65.4
SMO364G0089 Selaginella moellendorffii HOM05D001925 ORTHO05D004257 6.6e-09 66.2 80 41.2
Os07g0418200 Oryza sativa ssp. japonica HOM05D001925 ORTHO05D004257 4.7e-07 60.1 310 23.2
Pp3c9_18340 Physcomitrium patens HOM05D001925 ORTHO05D004257 1.4e-06 58.5 89 34.8
Pp3c15_17300 Physcomitrium patens HOM05D001925 ORTHO05D004257 2.3e-06 57.8 91 36.3


User provided reference genes

Program Settings