Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN06G3074 Fragaria x ananassa HOM05D005287 ORTHO05D006893 3.3e-201 706.1 834 100.0
FvH4_7g20132 Fragaria vesca HOM05D005287 ORTHO05D006893 5.7e-185 652.1 834 97.4
FAN03G3353 Fragaria x ananassa HOM05D005287 ORTHO05D006893 2.0e-137 494.2 769 95.6
FAN01G0321 Fragaria x ananassa HOM05D005287 ORTHO05D006893 5.6e-124 449.5 240 96.7
RcHm_v2.0_Chr1g0364091 Rosa chinensis HOM05D005287 ORTHO05D006893 2.5e-100 370.9 239 79.1
MD07G1179000 Malus domestica HOM05D005287 ORTHO05D006893 2.9e-80 304.3 236 66.1
Prupe.2G218100 Prunus persica HOM05D005287 ORTHO05D006893 1.3e-75 288.9 240 63.8
MD01G1131000 Malus domestica HOM05D005287 ORTHO05D006893 1.6e-75 288.5 231 64.5
CANSAT54G2917 Cannabis sativa HOM05D005287 ORTHO05D006893 3.9e-69 267.3 229 58.1
Cfa001592 Carpinus fangiana HOM05D005287 ORTHO05D006893 6.7e-69 266.5 231 58.4
Haze_16934 Corylus avellana HOM05D005287 ORTHO05D006893 6.7e-69 266.5 231 58.9
Cfa001595 Carpinus fangiana HOM05D005287 ORTHO05D006893 1.9e-68 265.0 231 58.0
CiPaw.01G276400 Carya illinoinensis HOM05D005287 ORTHO05D006893 4.3e-68 263.8 231 60.2
QL08p056824 Quercus lobata HOM05D005287 ORTHO05D006893 5.7e-68 263.5 229 58.1
Dinv11806 Davidia involucrata HOM05D005287 ORTHO05D006893 5.3e-66 256.9 234 58.1
Lalb_Chr06g0171161 Lupinus albus HOM05D005287 ORTHO05D006893 2.6e-65 254.6 224 58.5
Manes.10G042800 Manihot esculenta HOM05D005287 ORTHO05D006893 3.2e-63 247.7 240 57.1
Sed0021424 Sechium edule HOM05D005287 ORTHO05D006893 2.7e-62 244.6 231 54.5
ClCG02G013900 Citrullus lanatus HOM05D005287 ORTHO05D006893 6.7e-61 240.0 239 53.6
Rhsim06G0174700 Rhododendron simsii HOM05D005287 ORTHO05D006893 1.8e-58 231.9 240 53.3
Atru.chr12.633 Acer truncatum HOM05D005287 ORTHO05D006893 8.5e-56 223.0 233 54.1
Ciclev10033834m.g Citrus clementina HOM05D005287 ORTHO05D006893 1.4e-55 222.2 245 52.7
Nn5g30586 Nelumbo nucifera HOM05D005287 ORTHO05D006893 1.4e-55 222.2 211 53.6
Psat6g186200 Pisum sativum HOM05D005287 ORTHO05D006893 3.2e-55 221.1 227 52.9
Lj5g0006814 Lotus japonicus HOM05D005287 ORTHO05D006893 4.2e-55 220.7 228 53.5
PGR142G4068 Punica granatum HOM05D005287 ORTHO05D006893 1.6e-54 218.8 237 51.5
MELO3C011729.2 Cucumis melo HOM05D005287 ORTHO05D006893 2.7e-54 218.0 226 50.0
Aa31LG8G14080 Aethionema arabicum HOM05D005287 ORTHO05D006893 4.6e-54 217.2 244 50.0
Medtr1g095880 Medicago truncatula HOM05D005287 ORTHO05D006893 4.6e-54 217.2 228 51.8
Cc09_g02740 Coffea canephora HOM05D005287 ORTHO05D006893 5.1e-53 213.8 232 52.6
Hma1.2p1_0286F.1_g114160 Hydrangea macrophylla HOM05D005287 ORTHO05D006893 5.1e-53 213.8 242 49.6
DCAR_015277 Daucus carota HOM05D005287 ORTHO05D006893 6.7e-53 213.4 244 49.6
Thhalv10022574m.g Eutrema salsugineum HOM05D005287 ORTHO05D006893 1.3e-51 209.1 244 49.6
TAR628G1500 Trochodendron aralioides HOM05D005287 ORTHO05D006893 1.3e-51 209.1 225 52.0
A07p04270 Brassica napus HOM05D005287 ORTHO05D006893 2.2e-51 208.4 245 49.0
BraA07t28218Z Brassica rapa HOM05D005287 ORTHO05D006893 2.2e-51 208.4 245 49.0
CARHR107150 Cardamine hirsuta HOM05D005287 ORTHO05D006893 3.7e-51 207.6 244 48.8
SHI08859 Sapria himalayana HOM05D005287 ORTHO05D006893 3.7e-51 207.6 240 50.8
AL3G49590 Arabidopsis lyrata HOM05D005287 ORTHO05D006893 1.4e-50 205.7 238 48.7
Peaxi162Scf00016g01355 Petunia axillaris HOM05D005287 ORTHO05D006893 1.4e-50 205.7 238 50.4
AT2G16880 Arabidopsis thaliana HOM05D005287 ORTHO05D006893 1.8e-50 205.3 244 48.0
DCAR_001539 Daucus carota HOM05D005287 ORTHO05D006893 4.1e-50 204.1 233 49.8
Sp3g30160 Schrenkiella parvula HOM05D005287 ORTHO05D006893 2.6e-49 201.4 244 48.8
BcaB03g16413 Brassica carinata HOM05D005287 ORTHO05D006893 3.8e-48 197.6 245 47.3
Sopen01g053530 Solanum pennellii HOM05D005287 ORTHO05D006893 1.1e-47 196.1 234 48.7
Cpa.g.sc53.25 Carica papaya HOM05D005287 ORTHO05D006893 1.4e-47 195.7 233 47.2
Potri.010G217600 Populus trichocarpa HOM05D005287 ORTHO05D006893 1.4e-47 195.7 245 46.5
BcaC06g36186 Brassica carinata HOM05D005287 ORTHO05D006893 4.2e-47 194.1 239 47.3
C07p06750 Brassica napus HOM05D005287 ORTHO05D006893 4.2e-47 194.1 239 47.3
Solyc01g111470.4 Solanum lycopersicum HOM05D005287 ORTHO05D006893 1.2e-46 192.6 234 48.3
BolC7t41098H Brassica oleracea HOM05D005287 ORTHO05D006893 1.6e-46 192.2 239 46.9
MSTRG.8165 Avicennia marina HOM05D005287 ORTHO05D006893 2.7e-46 191.4 238 49.2
FAN10G3161 Fragaria x ananassa HOM05D005287 ORTHO05D006893 6.1e-46 190.3 99 94.9
Oeu007697.1 Olea europaea HOM05D005287 ORTHO05D006893 6.1e-46 190.3 246 48.0
Lsat_1_v5_gn_9_67461 Lactuca sativa HOM05D005287 ORTHO05D006893 7.9e-46 189.9 242 44.6
Ca_10593_v3 Cicer arietinum L. HOM05D005287 ORTHO05D006893 1.0e-45 189.5 226 46.0
THA.LOC104805786 Tarenaya hassleriana HOM05D005287 ORTHO05D006893 1.4e-45 189.1 235 46.0
Aqoxy5G00866 Aquilegia oxysepala HOM05D005287 ORTHO05D006893 1.8e-45 188.7 227 43.6
CAN.G588.65 Capsicum annuum HOM05D005287 ORTHO05D006893 2.6e-44 184.9 219 48.4
arahy.Tifrunner.gnm1.ann1.JQA4UT Arachis hypogaea HOM05D005287 ORTHO05D006893 9.7e-44 183.0 229 47.6
arahy.Tifrunner.gnm1.ann1.NBNI0E Arachis hypogaea HOM05D005287 ORTHO05D006893 2.2e-43 181.8 229 46.7
arahy.Tifrunner.gnm1.ann1.VJ1NN4 Arachis hypogaea HOM05D005287 ORTHO05D006893 2.8e-43 181.4 236 45.3
PSO566G0007 Papaver somniferum HOM05D005287 ORTHO05D006893 4.8e-43 180.6 234 43.6
Gohir.D04G136700 Gossypium hirsutum HOM05D005287 ORTHO05D006893 4.1e-42 177.6 224 44.2
TWI15G0219 Tripterygium wilfordii HOM05D005287 ORTHO05D006893 4.1e-42 177.6 221 47.5
arahy.Tifrunner.gnm1.ann1.VE562J Arachis hypogaea HOM05D005287 ORTHO05D006893 7.0e-42 176.8 236 47.0
HanXRQChr09g0246581 Helianthus annuus HOM05D005287 ORTHO05D006893 7.0e-42 176.8 207 45.9
SGA_v2.0_scaffold122G33244 Striga asiatica HOM05D005287 ORTHO05D006893 9.1e-42 176.4 240 45.4
TWI63G1618 Tripterygium wilfordii HOM05D005287 ORTHO05D006893 5.0e-40 170.6 230 46.5
Duzib114G0447 Durio zibethinus HOM05D005287 ORTHO05D006893 1.9e-39 168.7 223 43.5
Thecc.10G068400 Theobroma cacao HOM05D005287 ORTHO05D006893 7.2e-39 166.8 224 43.3
Gorai.012G120500 Gossypium raimondii HOM05D005287 ORTHO05D006893 2.7e-38 164.9 224 42.0
Gohir.A04G096900 Gossypium hirsutum HOM05D005287 ORTHO05D006893 3.6e-38 164.5 224 42.0
CsaV3_5G006270 Cucumis sativus L. HOM05D005287 ORTHO05D006893 1.4e-37 162.5 138 56.5
Glyma.10G213600 Glycine max HOM05D005287 ORTHO05D006893 1.5e-36 159.1 231 40.7
Carub.0003s3067 Capsella rubella HOM05D005287 ORTHO05D006893 1.7e-35 155.6 179 49.7
EL10Ac2g03556 Beta vulgaris HOM05D005287 ORTHO05D006893 1.1e-34 152.9 158 47.5
arahy.Tifrunner.gnm1.ann1.TR9913 Arachis hypogaea HOM05D005287 ORTHO05D006893 3.5e-33 147.9 236 42.4
Sc06g0001790 Simmondsia chinensis HOM05D005287 ORTHO05D006893 3.5e-33 147.9 140 52.9
Ah.16g108250 Amaranthus hybridus HOM05D005287 ORTHO05D006893 3.8e-32 144.4 154 45.5
PSO782G5729 Papaver somniferum HOM05D005287 ORTHO05D006893 2.5e-31 141.7 246 38.6
SalBow6G0018 Salvia bowleyana HOM05D005287 ORTHO05D006893 6.1e-30 137.1 235 40.4
Actinidia38253 Actinidia chinensis HOM05D005287 ORTHO05D006893 1.5e-28 132.5 132 49.2
AUR62027913 Chenopodium quinoa HOM05D005287 ORTHO05D006893 4.4e-28 131.0 167 41.9
AUR62043641 Chenopodium quinoa HOM05D005287 ORTHO05D006893 4.4e-28 131.0 167 41.9
AUR62020786 Chenopodium quinoa HOM05D005287 ORTHO05D006893 1.7e-27 129.0 168 41.1
arahy.Tifrunner.gnm1.ann1.IRN669 Arachis hypogaea HOM05D005287 ORTHO05D006893 2.8e-27 128.3 172 44.2
arahy.Tifrunner.gnm1.ann1.KW58JW Arachis hypogaea HOM05D005287 ORTHO05D006893 1.2e-25 122.9 217 43.3
HanXRQChr09g0246521 Helianthus annuus HOM05D005287 ORTHO05D006893 1.0e-24 119.8 148 45.3
PSO210G1683 Papaver somniferum HOM05D005287 ORTHO05D006893 1.1e-23 116.3 197 39.1
HPP92_023661 Vanilla planifolia HOM05D005287 ORTHO05D006893 2.5e-23 115.2 216 38.4
PSO210G6828 Papaver somniferum HOM05D005287 ORTHO05D006893 4.2e-23 114.4 201 39.3
arahy.Tifrunner.gnm1.ann1.SZH9K7 Arachis hypogaea HOM05D005287 ORTHO05D006893 8.8e-21 106.7 132 39.4
arahy.Tifrunner.gnm1.ann1.C25YBK Arachis hypogaea HOM05D005287 ORTHO05D006893 5.7e-20 104.0 128 39.8
arahy.Tifrunner.gnm1.ann1.V5M9Y5 Arachis hypogaea HOM05D005287 ORTHO05D006893 1.7e-19 102.4 132 39.4
Migut.F01800 Erythranthe guttata HOM05D005287 ORTHO05D006893 1.7e-19 102.4 119 47.1
arahy.Tifrunner.gnm1.ann1.W4HSG5 Arachis hypogaea HOM05D005287 ORTHO05D006893 3.1e-18 98.2 235 31.5
CSS0048123 Camellia sinensis var. sinensis HOM05D005287 ORTHO05D006893 9.2e-18 96.7 85 52.9
arahy.Tifrunner.gnm1.ann1.0HW3LW Arachis hypogaea HOM05D005287 ORTHO05D006893 1.2e-17 96.3 185 42.7
Eucgr.G02802 Eucalyptus grandis HOM05D005287 ORTHO05D006893 5.9e-17 94.0 87 51.7
Sabra10G0168300 Salix brachista HOM05D005287 ORTHO05D006893 5.9e-17 94.0 85 47.1
arahy.Tifrunner.gnm1.ann1.K64M7Y Arachis hypogaea HOM05D005287 ORTHO05D006893 1.0e-16 93.2 88 45.5
COL.COLO4_23731 Corchorus olitorius HOM05D005287 ORTHO05D006893 9.5e-15 86.7 79 51.9
Hma1.2p1_0137F.1_g062540 Hydrangea macrophylla HOM05D049318 ORTHO05D006893 9.5e-15 86.7 96 44.8
Hma1.2p1_0556F.1_g178055 Hydrangea macrophylla HOM05D049318 ORTHO05D006893 9.5e-15 86.7 96 44.8
Actinidia03030 Actinidia chinensis HOM05D005287 ORTHO05D006893 2.1e-14 85.5 90 46.7
Lj1E922T3 Lonicera japonica HOM05D005287 ORTHO05D006893 4.0e-13 81.3 85 45.9
SalBow2G1472 Salvia bowleyana HOM05D005287 ORTHO05D006893 2.6e-12 78.6 95 46.3
HPP92_023662 Vanilla planifolia HOM05D023777 ORTHO05D031065 1.7e-11 75.9 142 33.1
TAR376G0736 Trochodendron aralioides HOM05D005287 ORTHO05D006893 2.2e-11 75.5 68 52.9
Phvul.007G091900 Phaseolus vulgaris HOM05D005287 ORTHO05D006893 4.9e-11 74.3 96 44.8
arahy.Tifrunner.gnm1.ann1.PQP9HM Arachis hypogaea HOM05D005287 ORTHO05D006893 8.3e-11 73.6 129 41.9
VMungo0720G1141 Vigna mungo HOM05D005287 ORTHO05D006893 1.1e-10 73.2 96 43.8
Nitab4.5_0000061g0180 Nicotiana tabacum HOM05D005287 ORTHO05D006893 1.4e-10 72.8 67 52.2
MBI16_g17961_MAGBIO Magnolia biondii HOM05D005287 ORTHO05D006893 2.4e-10 72.0 85 41.2
arahy.Tifrunner.gnm1.ann1.HZQS8U Arachis hypogaea HOM05D005287 ORTHO05D006893 3.2e-10 71.6 123 33.3
PGSC0003DMG401006177 Solanum tuberosum HOM05D005287 ORTHO05D006893 7.0e-10 70.5 74 45.9
PGSC0003DMG402006177 Solanum tuberosum HOM05D005287 ORTHO05D006893 7.0e-10 70.5 74 45.9
Zm00001eb007770 Zea mays HOM05D005287 ORTHO05D006893 9.2e-10 70.1 237 29.5
arahy.Tifrunner.gnm1.ann1.J60LCZ Arachis hypogaea HOM05D005287 ORTHO05D006893 4.6e-09 67.8 76 42.1
SalBow2G3146 Salvia bowleyana HOM05D005287 ORTHO05D006893 1.0e-08 66.6 138 34.8
ATR0618G019 Amborella trichopoda HOM05D006888 ORTHO05D008371 1.3e-08 66.2 181 27.6
SalBow4G1805 Salvia bowleyana HOM05D005287 ORTHO05D006893 1.3e-08 66.2 138 34.8
MBI19_g08382_MAGBIO Magnolia biondii HOM05D007545 ORTHO05D009579 5.0e-08 64.3 226 29.6
arahy.Tifrunner.gnm1.ann1.4R3XMY Arachis hypogaea HOM05D005287 ORTHO05D006893 8.6e-08 63.5 74 41.9
SalBow1G2833 Salvia bowleyana HOM05D005287 ORTHO05D006893 8.6e-08 63.5 144 34.7
FvH4_7g20140 Fragaria vesca HOM05D004699 ORTHO05D005668 1.1e-07 63.2 30 96.7
FAN03G0794 Fragaria x ananassa HOM05D004699 ORTHO05D005668 1.1e-07 63.2 30 96.7
FAN06G0847 Fragaria x ananassa HOM05D004699 ORTHO05D005668 1.1e-07 63.2 30 96.7
FAN10G1203 Fragaria x ananassa HOM05D004699 ORTHO05D005668 1.1e-07 63.2 30 96.7
ATR1127G166 Amborella trichopoda HOM05D007358 ORTHO05D009117 3.3e-07 61.6 181 27.1
FAN01G1284 Fragaria x ananassa HOM05D004699 ORTHO05D005668 3.3e-07 61.6 30 93.3
RcHm_v2.0_Chr1g0364111 Rosa chinensis HOM05D004699 ORTHO05D005668 3.3e-07 61.6 30 93.3
PGSC0003DMG400004236 Solanum tuberosum HOM05D005287 ORTHO05D006893 4.3e-07 61.2 67 43.3
CDE01G0711 Ceratophyllum demersum HOM05D005287 ORTHO05D006893 2.1e-06 58.9 64 40.6
MD01G1131100 Malus domestica HOM05D004699 ORTHO05D005668 6.2e-06 57.4 29 86.2


User provided reference genes

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