Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN06G3020 Fragaria x ananassa HOM05D004003 ORTHO05D004595 1.5e-92 342.8 171 100.0
FvH4_7g30480 Fragaria vesca HOM05D004003 ORTHO05D004595 5.7e-92 340.9 171 99.4
FAN01G1512 Fragaria x ananassa HOM05D004003 ORTHO05D004595 5.7e-92 340.9 171 99.4
FAN10G2159 Fragaria x ananassa HOM05D004003 ORTHO05D004595 1.7e-91 339.3 171 98.8
FAN03G0349 Fragaria x ananassa HOM05D004003 ORTHO05D004595 3.7e-91 338.2 169 98.8
FAN03G2611 Fragaria x ananassa HOM05D004003 ORTHO05D004595 3.7e-91 338.2 169 98.8
FAN06G1184 Fragaria x ananassa HOM05D004003 ORTHO05D004595 4.8e-91 337.8 171 98.2
FAN10G2319 Fragaria x ananassa HOM05D004003 ORTHO05D004595 1.1e-90 336.7 171 98.2
RcHm_v2.0_Chr1g0378851 Rosa chinensis HOM05D004003 ORTHO05D004595 2.7e-89 332.0 171 96.5
Prupe.2G302600 Prunus persica HOM05D004003 ORTHO05D004595 1.0e-85 320.1 169 92.3
MD01G1210300 Malus domestica HOM05D004003 ORTHO05D004595 2.8e-83 312.0 169 88.8
MD07G1280400 Malus domestica HOM05D004003 ORTHO05D004595 1.1e-82 310.1 169 89.3
CiPaw.06G004300 Carya illinoinensis HOM05D004003 ORTHO05D004595 2.1e-78 295.8 169 85.8
Eucgr.A02717 Eucalyptus grandis HOM05D004003 ORTHO05D004595 1.0e-77 293.5 173 86.7
BcaB01g04212 Brassica carinata HOM05D004003 ORTHO05D004595 3.0e-77 292.0 170 84.1
CsaV3_3G017590 Cucumis sativus L. HOM05D004003 ORTHO05D004595 2.0e-76 289.3 155 89.7
AT5G52840 Arabidopsis thaliana HOM05D004003 ORTHO05D004595 3.4e-76 288.5 163 85.9
MELO3C006949.2 Cucumis melo HOM05D004003 ORTHO05D004595 1.7e-75 286.2 155 89.0
PGR042G1718 Punica granatum HOM05D004003 ORTHO05D004595 1.7e-75 286.2 169 84.6
Duzib084G0289 Durio zibethinus HOM05D004003 ORTHO05D004595 2.2e-75 285.8 165 85.5
Gohir.D11G013100 Gossypium hirsutum HOM05D004003 ORTHO05D004595 2.2e-75 285.8 169 84.0
THA.LOC104800278 Tarenaya hassleriana HOM05D004003 ORTHO05D004595 2.2e-75 285.8 163 84.7
BolC3t14217H Brassica oleracea HOM05D004003 ORTHO05D004595 2.8e-75 285.4 169 82.2
BraA03t10847Z Brassica rapa HOM05D004003 ORTHO05D004595 2.8e-75 285.4 169 82.2
COL.COLO4_30289 Corchorus olitorius HOM05D004003 ORTHO05D004595 2.8e-75 285.4 162 85.8
CARHR265770 Cardamine hirsuta HOM05D004003 ORTHO05D004595 3.7e-75 285.0 169 82.2
Ciclev10006072m.g Citrus clementina HOM05D004003 ORTHO05D004595 3.7e-75 285.0 169 82.8
Thhalv10014849m.g Eutrema salsugineum HOM05D004003 ORTHO05D004595 4.9e-75 284.6 169 82.8
BcaC01g06202 Brassica carinata HOM05D004003 ORTHO05D004595 6.3e-75 284.3 169 81.7
C03p18160 Brassica napus HOM05D004003 ORTHO05D004595 6.3e-75 284.3 169 81.7
Carub.0008s1300 Capsella rubella HOM05D004003 ORTHO05D004595 6.3e-75 284.3 169 82.2
Duzib205G1856 Durio zibethinus HOM05D004003 ORTHO05D004595 6.3e-75 284.3 169 83.4
AL8G27280 Arabidopsis lyrata HOM05D004003 ORTHO05D004595 8.3e-75 283.9 169 82.2
BraA10t43109Z Brassica rapa HOM05D004003 ORTHO05D004595 8.3e-75 283.9 163 84.0
ClCG05G008500 Citrullus lanatus HOM05D004003 ORTHO05D004595 8.3e-75 283.9 155 87.7
BcaB05g21985 Brassica carinata HOM05D004003 ORTHO05D004595 1.1e-74 283.5 162 85.2
Sp6g15000 Schrenkiella parvula HOM05D004003 ORTHO05D004595 1.1e-74 283.5 163 84.7
A03p15550 Brassica napus HOM05D004003 ORTHO05D004595 1.4e-74 283.1 169 81.7
Thhalv10026409m.g Eutrema salsugineum HOM05D004003 ORTHO05D004595 1.4e-74 283.1 161 84.5
Gohir.A11G012800 Gossypium hirsutum HOM05D004003 ORTHO05D004595 1.8e-74 282.7 169 82.8
BcaB08g35638 Brassica carinata HOM05D004003 ORTHO05D004595 3.2e-74 282.0 165 82.4
BcaC04g20535 Brassica carinata HOM05D004003 ORTHO05D004595 3.2e-74 282.0 163 84.0
C09p42440 Brassica napus HOM05D004003 ORTHO05D004595 3.2e-74 282.0 163 84.0
Sc14g0006860 Simmondsia chinensis HOM05D004003 ORTHO05D004595 3.2e-74 282.0 170 80.6
THA.LOC104825117 Tarenaya hassleriana HOM05D004003 ORTHO05D004595 3.2e-74 282.0 169 81.7
A02p11580 Brassica napus HOM05D004003 ORTHO05D004595 4.1e-74 281.6 160 85.0
Aa31LG3G9080 Aethionema arabicum HOM05D004003 ORTHO05D004595 7.0e-74 280.8 169 81.7
Sed0009881 Sechium edule HOM05D004003 ORTHO05D004595 7.0e-74 280.8 158 86.1
A10p10290 Brassica napus HOM05D004003 ORTHO05D004595 9.2e-74 280.4 163 83.4
BraA02t06220Z Brassica rapa HOM05D004003 ORTHO05D004595 9.2e-74 280.4 160 84.4
CANSAT21G1389 Cannabis sativa HOM05D004003 ORTHO05D004595 9.2e-74 280.4 155 84.5
CANSAT21G1446 Cannabis sativa HOM05D004003 ORTHO05D004595 9.2e-74 280.4 155 84.5
Thecc.03G186200 Theobroma cacao HOM05D004003 ORTHO05D004595 9.2e-74 280.4 169 82.2
Sed0014667 Sechium edule HOM05D004003 ORTHO05D004595 1.6e-73 279.6 164 83.5
Gorai.007G013400 Gossypium raimondii HOM05D004003 ORTHO05D004595 2.0e-73 279.3 165 84.8
TAR629G0127 Trochodendron aralioides HOM05D004003 ORTHO05D004595 2.7e-73 278.9 169 81.1
Sp7g25950 Schrenkiella parvula HOM05D004003 ORTHO05D004595 4.5e-73 278.1 152 86.8
Actinidia31844 Actinidia chinensis HOM05D004003 ORTHO05D004595 7.8e-73 277.3 151 87.4
Actinidia08590 Actinidia chinensis HOM05D004003 ORTHO05D004595 1.3e-72 276.6 152 85.5
Manes.06G153700 Manihot esculenta HOM05D004003 ORTHO05D004595 1.3e-72 276.6 169 82.2
Dinv35269 Davidia involucrata HOM05D004003 ORTHO05D004595 2.9e-72 275.4 151 86.1
Gorai.008G273600 Gossypium raimondii HOM05D004003 ORTHO05D004595 3.9e-72 275.0 169 79.9
Manes.14G021000 Manihot esculenta HOM05D004003 ORTHO05D004595 3.9e-72 275.0 151 86.1
CSS0000705 Camellia sinensis var. sinensis HOM05D004003 ORTHO05D004595 5.0e-72 274.6 151 85.4
Hund13071 Selenicereus undatus HOM05D004003 ORTHO05D004595 5.0e-72 274.6 169 81.1
Hma1.2p1_1713F.1_g298900 Hydrangea macrophylla HOM05D004003 ORTHO05D004595 6.6e-72 274.2 151 86.1
QL09p012375 Quercus lobata HOM05D004003 ORTHO05D004595 6.6e-72 274.2 169 78.7
Aqoxy7G00202 Aquilegia oxysepala HOM05D004003 ORTHO05D004595 8.6e-72 273.9 169 79.9
Cc02_g02230 Coffea canephora HOM05D004003 ORTHO05D004595 1.5e-71 273.1 178 75.8
Gohir.D12G255500 Gossypium hirsutum HOM05D004003 ORTHO05D004595 1.9e-71 272.7 169 79.3
Gohir.D12G255550 Gossypium hirsutum HOM05D004003 ORTHO05D004595 1.9e-71 272.7 169 79.3
Rhsim03G0192400 Rhododendron simsii HOM05D004003 ORTHO05D004595 5.6e-71 271.2 171 77.8
Actinidia03142 Actinidia chinensis HOM05D004003 ORTHO05D004595 7.3e-71 270.8 151 84.8
Oeu061668.1 Olea europaea HOM05D004003 ORTHO05D004595 7.3e-71 270.8 176 76.7
AUR62037745 Chenopodium quinoa HOM05D004003 ORTHO05D004595 9.5e-71 270.4 152 84.2
TWI23G0858 Tripterygium wilfordii HOM05D004003 ORTHO05D004595 9.5e-71 270.4 160 81.9
VMungo0464G2050 Vigna mungo HOM05D004003 ORTHO05D004595 9.5e-71 270.4 171 79.5
Atru.chr1.335 Acer truncatum HOM05D004003 ORTHO05D004595 1.2e-70 270.0 153 83.7
Oeu003331.1 Olea europaea HOM05D004003 ORTHO05D004595 1.2e-70 270.0 177 76.3
Gohir.A12G253200 Gossypium hirsutum HOM05D004003 ORTHO05D004595 1.6e-70 269.6 169 78.7
TWI14G1326 Tripterygium wilfordii HOM05D004003 ORTHO05D004595 1.6e-70 269.6 163 81.0
DCAR_010652 Daucus carota HOM05D004003 ORTHO05D004595 3.6e-70 268.5 169 78.7
Ah.11g045360 Amaranthus hybridus HOM05D004003 ORTHO05D004595 4.7e-70 268.1 166 78.3
Rhsim09G0201100 Rhododendron simsii HOM05D004003 ORTHO05D004595 4.7e-70 268.1 151 82.8
EL10Ac2g03211 Beta vulgaris HOM05D004003 ORTHO05D004595 1.0e-69 266.9 170 77.1
PSO017G3679 Papaver somniferum HOM05D004003 ORTHO05D004595 1.0e-69 266.9 168 81.0
Phvul.004G105700 Phaseolus vulgaris HOM05D004003 ORTHO05D004595 1.0e-69 266.9 171 78.4
SalBow2G3526 Salvia bowleyana HOM05D004003 ORTHO05D004595 1.0e-69 266.9 165 79.4
Dinv28379 Davidia involucrata HOM05D004003 ORTHO05D004595 1.8e-69 266.2 148 86.5
Lsat_1_v5_gn_2_131500 Lactuca sativa HOM05D004003 ORTHO05D004595 2.3e-69 265.8 168 78.6
Migut.F01081 Erythranthe guttata HOM05D004003 ORTHO05D004595 3.1e-69 265.4 178 74.7
Glyma.09G129000 Glycine max HOM05D004003 ORTHO05D004595 3.1e-69 265.4 168 78.6
Lj2g0001989 Lotus japonicus HOM05D004003 ORTHO05D004595 3.1e-69 265.4 171 77.8
SGA_v2.0_scaffold10G05280 Striga asiatica HOM05D004003 ORTHO05D004595 3.1e-69 265.4 153 85.0
arahy.Tifrunner.gnm1.ann1.SB31NP Arachis hypogaea HOM05D004003 ORTHO05D004595 4.0e-69 265.0 171 78.4
HanXRQChr15g0494181 Helianthus annuus HOM05D004003 ORTHO05D004595 4.0e-69 265.0 163 79.8
arahy.Tifrunner.gnm1.ann1.R03NAB Arachis hypogaea HOM05D004003 ORTHO05D004595 6.8e-69 264.2 171 78.4
Lsat_1_v5_gn_9_56860 Lactuca sativa HOM05D004003 ORTHO05D004595 6.8e-69 264.2 174 76.4
GSVIVG01028820001 Vitis vinifera HOM05D004003 ORTHO05D004595 6.8e-69 264.2 169 76.9
C02p19300 Brassica napus HOM05D004003 ORTHO05D004595 8.9e-69 263.8 168 78.0
BolC2t08066H Brassica oleracea HOM05D004003 ORTHO05D004595 8.9e-69 263.8 168 78.0
DCAR_020275 Daucus carota HOM05D004003 ORTHO05D004595 8.9e-69 263.8 153 84.3
Nn6g32413 Nelumbo nucifera HOM05D004003 ORTHO05D004595 8.9e-69 263.8 169 75.1
PSO478G4828 Papaver somniferum HOM05D004003 ORTHO05D004595 2.0e-68 262.7 170 77.6
Nitab4.5_0011314g0010 Nicotiana tabacum HOM05D004003 ORTHO05D004595 2.6e-68 262.3 174 76.4
CAN.G126.15 Capsicum annuum HOM05D004003 ORTHO05D004595 3.4e-68 261.9 174 77.0
Peaxi162Scf00444g00034 Petunia axillaris HOM05D004003 ORTHO05D004595 3.4e-68 261.9 174 74.1
Lalb_Chr19g0130491 Lupinus albus HOM05D004003 ORTHO05D004595 4.4e-68 261.5 151 84.1
Lalb_Chr03g0034981 Lupinus albus HOM05D004003 ORTHO05D004595 9.8e-68 260.4 171 77.2
Solyc03g007660.4 Solanum lycopersicum HOM05D004003 ORTHO05D004595 9.8e-68 260.4 174 76.4
MSTRG.8697 Avicennia marina HOM05D004003 ORTHO05D004595 1.7e-67 259.6 153 79.7
Sopen03g003590 Solanum pennellii HOM05D004003 ORTHO05D004595 1.7e-67 259.6 174 76.4
unitig_0.g1158 Utricularia gibba HOM05D004003 ORTHO05D004595 4.9e-67 258.1 157 79.0
Lj1A1007T57 Lonicera japonica HOM05D004003 ORTHO05D004595 8.3e-67 257.3 154 80.5
Lj1A1007T58 Lonicera japonica HOM05D004003 ORTHO05D004595 8.3e-67 257.3 154 80.5
Nitab4.5_0000472g0260 Nicotiana tabacum HOM05D004003 ORTHO05D004595 8.3e-67 257.3 153 82.4
Sabra17G0124400 Salix brachista HOM05D004003 ORTHO05D004595 1.1e-66 256.9 160 78.8
ECA232G1033 Erigeron canadensis HOM05D004003 ORTHO05D004595 2.4e-66 255.8 163 76.7
Sopen06g012130 Solanum pennellii HOM05D004003 ORTHO05D004595 3.2e-66 255.4 175 74.3
Potri.004G071900 Populus trichocarpa HOM05D004003 ORTHO05D004595 1.2e-65 253.4 170 73.5
Solyc06g036350.3 Solanum lycopersicum HOM05D004003 ORTHO05D004595 1.2e-65 253.4 175 73.7
PGSC0003DMG400028905 Solanum tuberosum HOM05D004003 ORTHO05D004595 1.2e-65 253.4 175 73.7
Psat0s1604g0040 Pisum sativum HOM05D004003 ORTHO05D004595 2.0e-65 252.7 151 79.5
ECA233G0998 Erigeron canadensis HOM05D004003 ORTHO05D004595 2.7e-65 252.3 172 73.3
Psat5g299680 Pisum sativum HOM05D004003 ORTHO05D004595 2.7e-65 252.3 158 75.9
Medtr6g053280 Medicago truncatula HOM05D004003 ORTHO05D004595 7.8e-65 250.8 158 75.9
Potri.017G149100 Populus trichocarpa HOM05D004003 ORTHO05D004595 1.3e-64 250.0 172 72.7
HPP92_001384 Vanilla planifolia HOM05D004003 ORTHO05D004595 3.0e-64 248.8 149 79.2
Ca_20595_v3 Cicer arietinum L. HOM05D004003 ORTHO05D004595 3.9e-64 248.4 158 74.1
Sabra04G0047300 Salix brachista HOM05D004003 ORTHO05D004595 8.6e-64 247.3 173 74.6
TPR.G27150 Trifolium pratense HOM05D004003 ORTHO05D004595 1.1e-63 246.9 158 74.7
vmacro06614 Vaccinium macrocarpon HOM05D004003 ORTHO05D004595 1.9e-63 246.1 228 59.2
CDE05G0545 Ceratophyllum demersum HOM05D004003 ORTHO05D004595 2.1e-62 242.7 164 73.2
CDE05G3305 Ceratophyllum demersum HOM05D004003 ORTHO05D004595 1.8e-61 239.6 164 71.3
Zm00001eb015010 Zea mays HOM05D004003 ORTHO05D004595 2.0e-60 236.1 148 75.0
Os03g0313000 Oryza sativa ssp. japonica HOM05D004003 ORTHO05D004595 3.4e-60 235.3 148 74.3
ATR0721G154 Amborella trichopoda HOM05D004003 ORTHO05D004595 4.9e-59 231.5 148 73.6
AUR62042233 Chenopodium quinoa HOM05D004003 ORTHO05D004595 1.6e-57 226.5 152 73.0
PSO478G1314 Papaver somniferum HOM05D004003 ORTHO05D004595 1.6e-57 226.5 132 81.8
TAR636G0624 Trochodendron aralioides HOM05D004003 ORTHO05D004595 3.9e-56 221.9 128 82.8
BolC9t57124H Brassica oleracea HOM05D004003 ORTHO05D004595 1.5e-55 219.9 163 68.7
Haze_00063 Corylus avellana HOM05D004003 ORTHO05D004595 3.3e-55 218.8 130 81.5
SEGI_14933 Sequoiadendron giganteum HOM05D004003 ORTHO05D004595 8.1e-54 214.2 165 61.8
MD00G1172600 Malus domestica HOM05D004003 ORTHO05D004595 8.9e-53 210.7 132 77.3
MD13G1261600 Malus domestica HOM05D004003 ORTHO05D004595 3.9e-48 195.3 112 80.4
Ah.10g032500 Amaranthus hybridus HOM05D004003 ORTHO05D004595 9.9e-44 180.6 154 61.7
Pp3c5_12290 Physcomitrium patens HOM05D004003 ORTHO05D004595 1.7e-43 179.9 134 64.9
CBR_g31069 Chara braunii HOM05D004003 ORTHO05D004595 1.1e-42 177.2 133 61.7
AagrBONN_evm.TU.Sc2ySwM_344.4010 Anthoceros agrestis HOM05D004003 ORTHO05D004595 4.2e-42 175.3 134 62.7
Mapoly0111s0029 Marchantia polymorpha HOM05D004003 ORTHO05D004595 3.5e-41 172.2 134 61.2
HanXRQChr10g0304961 Helianthus annuus HOM05D004003 ORTHO05D004595 1.1e-39 167.2 108 80.6
vmacro09809 Vaccinium macrocarpon HOM05D004003 ORTHO05D004595 1.9e-39 166.4 170 51.8
Thhalv10015894m.g Eutrema salsugineum HOM05D004003 ORTHO05D004595 3.6e-38 162.2 152 59.9
RcHm_v2.0_Chr1g0362161 Rosa chinensis HOM05D004003 ORTHO05D004595 1.8e-37 159.8 86 96.5
BcaC03g14495 Brassica carinata HOM05D004003 ORTHO05D004595 1.4e-34 150.2 88 86.4
Zm00001eb395850 Zea mays HOM05D004003 ORTHO05D004595 9.3e-34 147.5 91 78.0
SMO119G0129 Selaginella moellendorffii HOM05D004003 ORTHO05D004595 1.6e-30 136.7 120 53.3
CAN.G311.32 Capsicum annuum HOM05D005247 ORTHO05D006571 2.6e-28 129.4 105 67.6
Psat6g098040 Pisum sativum HOM05D000395 ORTHO05D004595 5.8e-28 128.3 98 68.4
Ah.03g141030 Amaranthus hybridus HOM05D004003 ORTHO05D004595 1.3e-27 127.1 103 61.2
ECA238G0868 Erigeron canadensis HOM05D004003 ORTHO05D004595 2.9e-27 125.9 179 40.8
ECA240G4047 Erigeron canadensis HOM05D004003 ORTHO05D004595 4.2e-26 122.1 131 43.5
AT4G28005 Arabidopsis thaliana HOM05D004003 ORTHO05D004595 2.5e-23 112.8 169 43.2
ECA240G1980 Erigeron canadensis HOM05D004003 ORTHO05D004595 3.3e-23 112.5 136 41.9
ECA240G4361 Erigeron canadensis HOM05D004003 ORTHO05D004595 3.3e-23 112.5 136 41.9
Dinv24022 Davidia involucrata HOM05D004003 ORTHO05D004595 5.6e-23 111.7 71 76.1
CAN.G204.11 Capsicum annuum HOM05D004003 ORTHO05D004595 1.1e-21 107.5 56 82.1
BcaC03g14494 Brassica carinata HOM05D004003 ORTHO05D004595 5.8e-20 101.7 66 69.7
COL.COLO4_06858 Corchorus olitorius HOM05D004003 ORTHO05D004595 8.4e-19 97.8 57 75.4
CAN.G640.19 Capsicum annuum HOM05D004003 ORTHO05D004595 8.7e-16 87.8 67 59.7
MCO01G593 Micromonas commoda HOM05D004003 ORTHO05D004595 1.5e-15 87.0 100 42.0
MCO01G594 Micromonas commoda HOM05D004003 ORTHO05D004595 1.5e-15 87.0 100 42.0
Haze_26197 Corylus avellana HOM05D004003 ORTHO05D004595 4.8e-14 82.0 95 38.9
Rhsim03G0124900 Rhododendron simsii HOM05D004003 ORTHO05D004595 1.1e-13 80.9 55 70.9
ATR0721G175 Amborella trichopoda HOM05D004003 ORTHO05D004595 7.6e-12 74.7 54 57.4
Cre13.g568800 Chlamydomonas reinhardtii HOM05D004003 ORTHO05D004595 8.4e-11 71.2 95 43.2


User provided reference genes

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