Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN06G3007 Fragaria x ananassa HOM05D006991 ORTHO05D009188 0.0e+00 1364.4 675 100.0
FAN01G0340 Fragaria x ananassa HOM05D006991 ORTHO05D009188 0.0e+00 1359.7 675 99.7
FAN06G2381 Fragaria x ananassa HOM05D006991 ORTHO05D009188 0.0e+00 1352.4 693 97.3
FAN10G0464 Fragaria x ananassa HOM05D006991 ORTHO05D009188 0.0e+00 1315.8 682 96.8
FvH4_7g13830 Fragaria vesca HOM05D006991 ORTHO05D009188 0.0e+00 1290.8 675 95.6
FAN03G2057 Fragaria x ananassa HOM05D006991 ORTHO05D009188 0.0e+00 1276.9 675 94.4
RcHm_v2.0_Chr1g0354041 Rosa chinensis HOM05D006991 ORTHO05D009188 0.0e+00 1222.6 676 90.2
Prupe.2G164100 Prunus persica HOM05D006991 ORTHO05D009188 0.0e+00 1097.0 679 82.0
MD01G1054400 Malus domestica HOM05D006991 ORTHO05D009188 0.0e+00 1088.6 665 82.3
Potri.002G157400 Populus trichocarpa HOM05D006991 ORTHO05D009188 4.2e-279 964.5 662 73.0
GSVIVG01026850001 Vitis vinifera HOM05D006991 ORTHO05D009188 2.1e-278 962.2 671 71.5
TPR.G4402 Trifolium pratense HOM05D006991 ORTHO05D009188 8.1e-275 950.3 668 71.4
Lj3g0006815 Lotus japonicus HOM05D006991 ORTHO05D009188 4.0e-274 948.0 674 70.5
QL08p049512 Quercus lobata HOM05D006991 ORTHO05D009188 4.0e-274 948.0 675 72.3
CANSAT56G3382 Cannabis sativa HOM05D006991 ORTHO05D009188 8.4e-272 940.3 668 71.9
Ciclev10019238m.g Citrus clementina HOM05D006991 ORTHO05D009188 1.9e-271 939.1 667 71.7
Medtr8g031480 Medicago truncatula HOM05D006991 ORTHO05D009188 3.2e-271 938.3 671 69.7
Haze_15467 Corylus avellana HOM05D006991 ORTHO05D009188 5.5e-271 937.6 668 71.9
Lalb_Chr04g0256761 Lupinus albus HOM05D006991 ORTHO05D009188 7.1e-271 937.2 671 70.2
Glyma.07G073500 Glycine max HOM05D006991 ORTHO05D009188 4.6e-270 934.5 668 70.4
TWI23G0867 Tripterygium wilfordii HOM05D006991 ORTHO05D009188 1.0e-264 916.8 659 70.9
Cfa003952 Carpinus fangiana HOM05D006991 ORTHO05D009188 3.5e-262 908.3 670 70.1
Dinv43786 Davidia involucrata HOM05D006991 ORTHO05D009188 8.7e-261 903.7 668 67.8
VMungo0331G1855 Vigna mungo HOM05D006991 ORTHO05D009188 8.2e-259 897.1 655 69.9
Nn6g33525 Nelumbo nucifera HOM05D006991 ORTHO05D009188 1.3e-256 889.8 668 65.7
Atru.chr5.484 Acer truncatum HOM05D006991 ORTHO05D009188 1.2e-254 883.2 626 71.7
Duzib138G0243 Durio zibethinus HOM05D006991 ORTHO05D009188 2.1e-254 882.5 672 68.5
Thecc.01G363100 Theobroma cacao HOM05D006991 ORTHO05D009188 5.1e-253 877.9 670 68.8
CSS0011179 Camellia sinensis var. sinensis HOM05D006991 ORTHO05D009188 8.7e-253 877.1 656 67.1
DCAR_015941 Daucus carota HOM05D006991 ORTHO05D009188 1.8e-250 869.4 663 66.2
AUR62004323 Chenopodium quinoa HOM05D006991 ORTHO05D009188 2.6e-249 865.5 671 65.6
COL.COLO4_12678 Corchorus olitorius HOM05D006991 ORTHO05D009188 2.6e-249 865.5 664 67.3
BolC8t52898H Brassica oleracea HOM05D006991 ORTHO05D009188 3.8e-248 861.7 659 66.9
Ah.05g176510 Amaranthus hybridus HOM05D006991 ORTHO05D009188 6.5e-248 860.9 670 64.8
Cc02_g37710 Coffea canephora HOM05D006991 ORTHO05D009188 1.9e-247 859.4 652 65.5
Lj9A581T68 Lonicera japonica HOM05D006991 ORTHO05D009188 1.9e-247 859.4 660 64.8
THA.LOC104801448 Tarenaya hassleriana HOM05D006991 ORTHO05D009188 7.2e-247 857.4 665 65.4
Cpa.g.sc18.226 Carica papaya HOM05D006991 ORTHO05D009188 9.4e-247 857.1 681 65.5
AT1G01770 Arabidopsis thaliana HOM05D006991 ORTHO05D009188 2.1e-246 855.9 656 66.5
MSTRG.28216 Avicennia marina HOM05D006991 ORTHO05D009188 2.1e-246 855.9 672 63.4
ClCG05G001680 Citrullus lanatus HOM05D006991 ORTHO05D009188 4.6e-246 854.7 660 65.9
HanXRQChr04g0121651 Helianthus annuus HOM05D006991 ORTHO05D009188 4.6e-246 854.7 657 64.8
PGR042G0621 Punica granatum HOM05D006991 ORTHO05D009188 7.9e-246 854.0 659 65.9
Thhalv10007047m.g Eutrema salsugineum HOM05D006991 ORTHO05D009188 1.8e-245 852.8 664 65.2
AL1G10570 Arabidopsis lyrata HOM05D006991 ORTHO05D009188 1.1e-244 850.1 663 65.6
Aqoxy5G03423_Aqoxy5G03424 Aquilegia oxysepala HOM05D006991 ORTHO05D009188 2.0e-244 849.4 668 64.7
C08p53830 Brassica napus HOM05D006991 ORTHO05D009188 2.5e-244 849.0 653 66.6
Aa31LG1G11140 Aethionema arabicum HOM05D006991 ORTHO05D009188 5.7e-244 847.8 668 65.1
Sp1g00530 Schrenkiella parvula HOM05D006991 ORTHO05D009188 9.7e-244 847.0 657 65.0
BraA09t42261Z Brassica rapa HOM05D006991 ORTHO05D009188 2.2e-243 845.9 651 66.4
Eucgr.E00177 Eucalyptus grandis HOM05D006991 ORTHO05D009188 1.1e-242 843.6 684 63.6
Lsat_1_v5_gn_7_5201 Lactuca sativa HOM05D006991 ORTHO05D009188 1.1e-242 843.6 659 65.4
Sed0028010 Sechium edule HOM05D006991 ORTHO05D009188 3.1e-242 842.0 661 65.4
Rhsim07G0017800 Rhododendron simsii HOM05D006991 ORTHO05D009188 1.5e-241 839.7 659 65.6
Gohir.D07G148700 Gossypium hirsutum HOM05D006991 ORTHO05D009188 2.0e-241 839.3 664 65.5
Nitab4.5_0002160g0070 Nicotiana tabacum HOM05D006991 ORTHO05D009188 2.6e-241 839.0 655 64.0
PSO063G6634 Papaver somniferum HOM05D006991 ORTHO05D009188 4.5e-241 838.2 660 65.5
Gorai.001G170100 Gossypium raimondii HOM05D006991 ORTHO05D009188 5.9e-241 837.8 664 65.4
CSS0000914 Camellia sinensis var. sinensis HOM05D006991 ORTHO05D009188 8.5e-240 833.9 656 64.8
Nitab4.5_0009210g0040 Nicotiana tabacum HOM05D006991 ORTHO05D009188 1.1e-239 833.6 655 63.5
MELO3C006127.2 Cucumis melo HOM05D006991 ORTHO05D009188 1.4e-239 833.2 668 63.8
PGSC0003DMG400000156 Solanum tuberosum HOM05D006991 ORTHO05D009188 1.4e-239 833.2 656 63.6
Psat4g154080 Pisum sativum HOM05D006991 ORTHO05D009188 1.9e-239 832.8 610 68.5
Carub.0001s0044 Capsella rubella HOM05D006991 ORTHO05D009188 2.5e-239 832.4 666 64.1
CAN.G78.50 Capsicum annuum HOM05D006991 ORTHO05D009188 3.2e-239 832.0 657 63.2
Hma1.2p1_0001F.1_g001590 Hydrangea macrophylla HOM05D006991 ORTHO05D009188 3.2e-239 832.0 661 64.0
Migut.N01431 Erythranthe guttata HOM05D006991 ORTHO05D009188 2.7e-238 828.9 654 63.0
CsaV3_3G009060 Cucumis sativus L. HOM05D006991 ORTHO05D009188 2.3e-237 825.9 658 64.3
Solyc01g094330.3 Solanum lycopersicum HOM05D006991 ORTHO05D009188 3.9e-237 825.1 678 62.2
Sopen01g038120 Solanum pennellii HOM05D006991 ORTHO05D009188 1.1e-236 823.5 656 63.1
ATR0680G083 Amborella trichopoda HOM05D006991 ORTHO05D009188 4.4e-236 821.6 672 61.3
Peaxi162Scf00020g00011 Petunia axillaris HOM05D006991 ORTHO05D009188 4.4e-236 821.6 683 61.3
CDE05G1529 Ceratophyllum demersum HOM05D006991 ORTHO05D009188 3.7e-235 818.5 673 61.2
ECA236G3544 Erigeron canadensis HOM05D006991 ORTHO05D009188 1.8e-234 816.2 654 62.7
Sc26g0001000 Simmondsia chinensis HOM05D006991 ORTHO05D009188 2.0e-233 812.8 655 63.2
SGA_v2.0_scaffold43G16441 Striga asiatica HOM05D006991 ORTHO05D009188 3.8e-232 808.5 656 61.3
Hund27298 Selenicereus undatus HOM05D006991 ORTHO05D002850 1.2e-230 803.5 667 63.3
Gohir.A07G142900 Gossypium hirsutum HOM05D006991 ORTHO05D009188 2.7e-230 802.4 666 63.7
vmacro13305 Vaccinium macrocarpon HOM05D006991 ORTHO05D009188 4.7e-230 801.6 715 59.0
SalBow5G3488 Salvia bowleyana HOM05D006991 ORTHO05D009188 9.7e-228 793.9 671 60.5
SalBow5G3803 Salvia bowleyana HOM05D006991 ORTHO05D009188 9.7e-228 793.9 671 60.5
Os07g0457300 Oryza sativa ssp. japonica HOM05D006991 ORTHO05D009188 1.8e-221 773.1 657 59.5
arahy.Tifrunner.gnm1.ann1.NT7Z8Q Arachis hypogaea HOM05D006991 ORTHO05D009188 5.7e-220 768.1 661 61.1
Zm00001eb306550 Zea mays HOM05D006991 ORTHO05D009188 1.0e-216 757.3 671 58.4
EL10Ac1g00536 Beta vulgaris HOM05D006991 ORTHO05D009188 3.7e-211 738.8 668 57.9
Hma1.2p1_0001F.1_g001600 Hydrangea macrophylla HOM05D006991 ORTHO05D009188 7.0e-210 734.6 497 72.4
HPP92_004979 Vanilla planifolia HOM05D006991 ORTHO05D009188 5.0e-208 728.4 659 56.1
CiPaw.02G028700 Carya illinoinensis HOM05D006991 ORTHO05D009188 1.5e-199 700.3 478 73.6
unitig_748.g7107 Utricularia gibba HOM05D006991 ORTHO05D009188 1.0e-192 677.6 618 57.4
Actinidia10005 Actinidia chinensis HOM05D006991 ORTHO05D009188 6.2e-190 668.3 566 61.7
arahy.Tifrunner.gnm1.ann1.JH251T Arachis hypogaea HOM05D006991 ORTHO05D009188 7.5e-188 661.4 661 55.7
Pp3c9_2540 Physcomitrium patens HOM05D006991 ORTHO05D009188 7.1e-178 628.2 642 52.3
Ca_23659_v3 Cicer arietinum L. HOM05D006991 ORTHO05D009188 2.2e-171 606.7 641 52.7
SMO164G0214 Selaginella moellendorffii HOM05D006991 ORTHO05D009188 6.0e-169 598.6 648 49.8
MBI18_g09765_MAGBIO Magnolia biondii HOM05D006991 ORTHO05D009188 2.5e-167 593.2 504 60.1
Phvul.010G096000 Phaseolus vulgaris HOM05D006991 ORTHO05D009188 1.5e-159 567.4 374 75.1
CARHR000550 Cardamine hirsuta HOM05D006991 ORTHO05D009188 1.3e-152 544.3 450 61.1
Manes.01G259800 Manihot esculenta HOM05D006991 ORTHO05D009188 6.7e-144 515.4 347 74.6
RcHm_v2.0_Chr1g0354021 Rosa chinensis HOM05D006991 ORTHO05D009188 2.5e-138 496.9 447 62.4
TAR375G0043 Trochodendron aralioides HOM05D006991 ORTHO05D009188 2.5e-138 496.9 355 69.0
AagrBONN_evm.TU.Sc2ySwM_344.4948 Anthoceros agrestis HOM05D006991 ORTHO05D009188 3.1e-133 479.9 466 52.4
EL10Ac1g02136 Beta vulgaris HOM05D006991 ORTHO05D009188 4.9e-78 296.6 268 57.1
Sabra02G0125100 Salix brachista HOM05D006991 ORTHO05D009188 3.0e-75 287.3 211 71.6
EL10Ac3g06779 Beta vulgaris HOM05D006991 ORTHO05D009188 8.1e-73 279.3 183 68.3
Ca_23662_v3 Cicer arietinum L. HOM05D006991 ORTHO05D028457 5.8e-55 219.9 148 74.3
HanXRQChr01g0021681 Helianthus annuus HOM05D006991 ORTHO05D009188 3.2e-53 214.2 224 53.1
AUR62033321 Chenopodium quinoa HOM05D006991 ORTHO05D028457 3.3e-50 204.1 129 76.0
EL10Ac5g11247 Beta vulgaris HOM05D006991 ORTHO05D009188 1.3e-49 202.2 191 54.5
QL09p021383 Quercus lobata HOM05D006991 ORTHO05D009188 3.1e-48 197.6 182 61.5
PSO782G3099 Papaver somniferum HOM05D006991 ORTHO05D028457 1.9e-42 178.3 173 56.6
AUR62003727 Chenopodium quinoa HOM05D001417 ORTHO05D001496 7.6e-39 166.4 167 55.7
CAN.G1527.6 Capsicum annuum HOM05D006991 ORTHO05D028457 1.1e-32 146.0 103 68.0
HanXRQChr01g0025441 Helianthus annuus HOM05D006991 ORTHO05D009188 7.6e-31 139.8 73 84.9
HanXRQChr03g0092981 Helianthus annuus HOM05D006991 ORTHO05D226355 7.9e-28 129.8 114 56.1
AUR62036784 Chenopodium quinoa HOM05D006991 ORTHO05D138340 6.1e-20 103.6 77 62.3
CAN.G226.8 Capsicum annuum HOM05D006991 ORTHO05D000001 2.4e-16 91.7 53 75.5


User provided reference genes

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