Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN06G2896 Fragaria x ananassa HOM05D006036 ORTHO05D007736 3.9e-44 181.0 89 100.0
FAN10G0738 Fragaria x ananassa HOM05D006036 ORTHO05D007736 3.6e-37 157.9 76 100.0
FAN10G3538 Fragaria x ananassa HOM05D006036 ORTHO05D007736 3.6e-37 157.9 76 100.0
FAN03G0372 Fragaria x ananassa HOM05D006036 ORTHO05D007736 4.7e-37 157.5 76 98.7
RcHm_v2.0_Chr1g0350591 Rosa chinensis HOM05D006036 ORTHO05D007736 1.4e-36 156.0 76 97.4
FAN01G0425 Fragaria x ananassa HOM05D006036 ORTHO05D007736 3.9e-36 154.5 76 96.1
FAN06G1700 Fragaria x ananassa HOM05D006036 ORTHO05D007736 8.8e-36 153.3 77 98.7
Dinv32378 Davidia involucrata HOM05D006036 ORTHO05D007736 5.7e-35 150.6 84 83.3
FvH4_7g11910 Fragaria vesca HOM05D006036 ORTHO05D007736 5.7e-35 150.6 76 98.7
Gohir.A08G134500 Gossypium hirsutum HOM05D006036 ORTHO05D007736 9.7e-35 149.8 76 90.8
Cpa.g.sc349.4 Carica papaya HOM05D006036 ORTHO05D007736 2.4e-33 145.2 76 86.8
Nn1g01232 Nelumbo nucifera HOM05D006036 ORTHO05D007736 2.4e-33 145.2 76 86.8
Thecc.01G376100 Theobroma cacao HOM05D006036 ORTHO05D007736 2.4e-33 145.2 76 86.8
Psat7g231640 Pisum sativum HOM05D006036 ORTHO05D007736 3.1e-33 144.8 76 86.8
DCAR_031531 Daucus carota HOM05D006036 ORTHO05D007736 9.1e-33 143.3 78 83.3
Oeu037915.1 Olea europaea HOM05D006036 ORTHO05D007736 1.2e-32 142.9 77 84.4
TWI14G1308 Tripterygium wilfordii HOM05D006036 ORTHO05D007736 1.2e-32 142.9 76 86.8
ATR0810G113 Amborella trichopoda HOM05D006036 ORTHO05D007736 1.6e-32 142.5 84 79.8
Prupe.2G145700 Prunus persica HOM05D006036 ORTHO05D007736 1.6e-32 142.5 76 88.2
Cfa001720 Carpinus fangiana HOM05D006036 ORTHO05D007736 2.0e-32 142.1 76 84.2
Duzib133G1287 Durio zibethinus HOM05D006036 ORTHO05D007736 2.6e-32 141.7 84 79.8
QL08p052466 Quercus lobata HOM05D006036 ORTHO05D007736 2.6e-32 141.7 76 85.5
Hund17020 Selenicereus undatus HOM05D006036 ORTHO05D007736 2.6e-32 141.7 76 84.2
Ca_03013_v3 Cicer arietinum L. HOM05D006036 ORTHO05D007736 3.5e-32 141.4 76 81.6
Ciclev10022362m.g Citrus clementina HOM05D006036 ORTHO05D007736 3.5e-32 141.4 76 85.5
Ah.16g109830 Amaranthus hybridus HOM05D006036 ORTHO05D007736 4.5e-32 141.0 76 82.9
Manes.05G045200 Manihot esculenta HOM05D006036 ORTHO05D007736 4.5e-32 141.0 77 85.7
CiPaw.01G261900 Carya illinoinensis HOM05D006036 ORTHO05D007736 7.7e-32 140.2 76 85.5
Atru.chr5.310 Acer truncatum HOM05D006036 ORTHO05D007736 1.0e-31 139.8 76 84.2
Aqoxy7G00627 Aquilegia oxysepala HOM05D006036 ORTHO05D007736 1.0e-31 139.8 76 82.9
MELO3C035247.2 Cucumis melo HOM05D006036 ORTHO05D007736 1.0e-31 139.8 76 82.9
Eucgr.E01417 Eucalyptus grandis HOM05D006036 ORTHO05D007736 1.0e-31 139.8 75 84.0
Lalb_Chr07g0189801 Lupinus albus HOM05D006036 ORTHO05D007736 1.0e-31 139.8 76 81.6
Glyma.01G142900 Glycine max HOM05D006036 ORTHO05D007736 1.3e-31 139.4 76 82.9
Glyma.03G023900 Glycine max HOM05D006036 ORTHO05D007736 1.3e-31 139.4 76 82.9
Glyma.14G070200 Glycine max HOM05D006036 ORTHO05D007736 1.3e-31 139.4 76 82.9
Lj9A569G50 Lonicera japonica HOM05D006036 ORTHO05D007736 1.3e-31 139.4 85 75.3
Haze_16816 Corylus avellana HOM05D006036 ORTHO05D007736 1.7e-31 139.0 76 84.2
MD02G1204100 Malus domestica HOM05D006036 ORTHO05D007736 1.7e-31 139.0 76 86.8
Sed0014119 Sechium edule HOM05D006036 ORTHO05D007736 2.2e-31 138.7 76 81.6
GSVIVG01027612001 Vitis vinifera HOM05D006036 ORTHO05D007736 2.2e-31 138.7 76 82.9
ClCG06G000370 Citrullus lanatus HOM05D006036 ORTHO05D007736 2.9e-31 138.3 76 81.6
Peaxi162Scf00021g01720 Petunia axillaris HOM05D006036 ORTHO05D007736 2.9e-31 138.3 76 82.9
Phvul.010G084400 Phaseolus vulgaris HOM05D006036 ORTHO05D007736 2.9e-31 138.3 76 82.9
CANSAT56G2189 Cannabis sativa HOM05D006036 ORTHO05D007736 3.8e-31 137.9 76 82.9
Medtr4g023550 Medicago truncatula HOM05D006036 ORTHO05D007736 3.8e-31 137.9 76 80.3
SalBow5G0783 Salvia bowleyana HOM05D006036 ORTHO05D007736 3.8e-31 137.9 76 82.9
SalBow5G3583 Salvia bowleyana HOM05D006036 ORTHO05D007736 3.8e-31 137.9 76 82.9
Cc02_g36690 Coffea canephora HOM05D006036 ORTHO05D007736 8.5e-31 136.7 76 80.3
Nitab4.5_0005372g0020 Nicotiana tabacum HOM05D006036 ORTHO05D007736 8.5e-31 136.7 76 81.6
Sed0006891 Sechium edule HOM05D006036 ORTHO05D007736 8.5e-31 136.7 76 80.3
Solyc01g091360.4 Solanum lycopersicum HOM05D006036 ORTHO05D007736 8.5e-31 136.7 76 81.6
Sopen01g037100 Solanum pennellii HOM05D006036 ORTHO05D007736 8.5e-31 136.7 76 81.6
TPR.G9852 Trifolium pratense HOM05D006036 ORTHO05D007736 8.5e-31 136.7 76 81.6
VMungo0331G0186 Vigna mungo HOM05D006036 ORTHO05D007736 8.5e-31 136.7 76 81.6
EL10Ac1g00899 Beta vulgaris HOM05D006036 ORTHO05D007736 1.5e-30 136.0 76 81.6
CsaV3_6G006160 Cucumis sativus L. HOM05D006036 ORTHO05D007736 1.5e-30 136.0 76 80.3
Sc02g0002580 Simmondsia chinensis HOM05D006036 ORTHO05D007736 1.5e-30 136.0 76 81.6
AUR62013628 Chenopodium quinoa HOM05D006036 ORTHO05D007736 1.9e-30 135.6 76 80.3
Actinidia12688 Actinidia chinensis HOM05D006036 ORTHO05D007736 2.5e-30 135.2 84 78.6
MSTRG.4890 Avicennia marina HOM05D006036 ORTHO05D007736 2.5e-30 135.2 76 80.3
unitig_8.g4983 Utricularia gibba HOM05D006036 ORTHO05D007736 3.2e-30 134.8 76 81.6
AUR62004220 Chenopodium quinoa HOM05D006036 ORTHO05D007736 5.5e-30 134.0 76 80.3
Lj3g0008791 Lotus japonicus HOM05D006036 ORTHO05D007736 7.2e-30 133.7 76 78.9
VMungo0251G0926 Vigna mungo HOM05D006036 ORTHO05D007736 7.2e-30 133.7 76 80.3
PGSC0003DMG400012774 Solanum tuberosum HOM05D006036 ORTHO05D007736 9.4e-30 133.3 76 80.3
vmacro21009 Vaccinium macrocarpon HOM05D006036 ORTHO05D007736 2.1e-29 132.1 77 80.5
Glyma.08G286100 Glycine max HOM05D006036 ORTHO05D007736 3.6e-29 131.3 76 78.9
MBI04_g35276_MAGBIO Magnolia biondii HOM05D006036 ORTHO05D007736 4.7e-29 131.0 85 71.8
Potri.002G148400 Populus trichocarpa HOM05D006036 ORTHO05D007736 4.7e-29 131.0 77 76.6
Rhsim01G0147400 Rhododendron simsii HOM05D006036 ORTHO05D007736 4.7e-29 131.0 76 81.6
CDE02G2016 Ceratophyllum demersum HOM05D006036 ORTHO05D007736 6.1e-29 130.6 76 80.3
PGR042G0035 Punica granatum HOM05D006036 ORTHO05D007736 6.1e-29 130.6 75 80.0
Sabra02G0117300 Salix brachista HOM05D006036 ORTHO05D007736 6.1e-29 130.6 77 77.9
BcaC07g40602 Brassica carinata HOM05D006036 ORTHO05D007736 8.0e-29 130.2 76 81.6
C08p35770 Brassica napus HOM05D006036 ORTHO05D007736 8.0e-29 130.2 76 81.6
BolC8t51167H Brassica oleracea HOM05D006036 ORTHO05D007736 8.0e-29 130.2 76 81.6
CARHR171200 Cardamine hirsuta HOM05D006036 ORTHO05D007736 1.0e-28 129.8 76 81.6
Sabra02G0115600 Salix brachista HOM05D006036 ORTHO05D007736 1.0e-28 129.8 77 77.9
vmacro21008 Vaccinium macrocarpon HOM05D006036 ORTHO05D007736 1.4e-28 129.4 76 80.3
A09p53070 Brassica napus HOM05D006036 ORTHO05D007736 3.0e-28 128.3 76 80.3
BraA09t40733Z Brassica rapa HOM05D006036 ORTHO05D007736 3.0e-28 128.3 76 80.3
CSS0011162 Camellia sinensis var. sinensis HOM05D006036 ORTHO05D007736 3.0e-28 128.3 76 80.3
CSS0022013 Camellia sinensis var. sinensis HOM05D006036 ORTHO05D007736 3.0e-28 128.3 76 80.3
Carub.0005s2756 Capsella rubella HOM05D006036 ORTHO05D007736 3.0e-28 128.3 76 80.3
Aa31LG10G15050 Aethionema arabicum HOM05D006036 ORTHO05D007736 4.0e-28 127.9 76 80.3
Sp5g02440 Schrenkiella parvula HOM05D006036 ORTHO05D007736 4.0e-28 127.9 76 80.3
AL5G43130 Arabidopsis lyrata HOM05D006036 ORTHO05D007736 5.2e-28 127.5 76 80.3
AT3G60810 Arabidopsis thaliana HOM05D006036 ORTHO05D007736 5.2e-28 127.5 76 80.3
HanXRQChr16g0520241 Helianthus annuus HOM05D006036 ORTHO05D007736 5.2e-28 127.5 76 76.3
BcaC07g42642 Brassica carinata HOM05D006036 ORTHO05D007736 6.7e-28 127.1 76 78.9
SEGI_01363 Sequoiadendron giganteum HOM05D006036 ORTHO05D007736 6.7e-28 127.1 76 76.3
THA.LOC104802443 Tarenaya hassleriana HOM05D006036 ORTHO05D007736 8.8e-28 126.7 77 76.6
CAN.G388.12 Capsicum annuum HOM05D006036 ORTHO05D007736 1.2e-27 126.3 76 75.0
arahy.Tifrunner.gnm1.ann1.B3VI1A Arachis hypogaea HOM05D006036 ORTHO05D007736 2.6e-27 125.2 76 77.6
arahy.Tifrunner.gnm1.ann1.Y8TVDJ Arachis hypogaea HOM05D006036 ORTHO05D007736 2.6e-27 125.2 76 77.6
ECA234G4399 Erigeron canadensis HOM05D006036 ORTHO05D007736 1.3e-26 122.9 76 73.7
Thhalv10006234m.g Eutrema salsugineum HOM05D006036 ORTHO05D007736 2.2e-26 122.1 76 80.3
Lsat_1_v5_gn_4_40940 Lactuca sativa HOM05D006036 ORTHO05D007736 2.2e-26 122.1 76 73.7
Zm00001eb210410 Zea mays HOM05D006036 ORTHO05D007736 8.3e-26 120.2 76 68.4
Ca_07819_v3 Cicer arietinum L. HOM05D006036 ORTHO05D007736 2.4e-25 118.6 77 70.1
Medtr7g074920 Medicago truncatula HOM05D006036 ORTHO05D007736 2.4e-25 118.6 77 68.8
Gorai.007G091200 Gossypium raimondii HOM05D001611 ORTHO05D001464 5.3e-25 117.5 69 78.3
Os03g0858700 Oryza sativa ssp. japonica HOM05D006036 ORTHO05D007736 5.3e-25 117.5 76 67.1
AagrBONN_evm.TU.Sc2ySwM_117.1558 Anthoceros agrestis HOM05D006036 ORTHO05D007736 9.1e-25 116.7 76 69.7
SMO143G0045 Selaginella moellendorffii HOM05D006036 ORTHO05D007736 1.2e-24 116.3 76 71.1
Mapoly0007s0216 Marchantia polymorpha HOM05D006036 ORTHO05D007736 2.0e-24 115.5 76 65.8
Gohir.D11G085366 Gossypium hirsutum HOM05D001611 ORTHO05D001464 1.0e-23 113.2 69 75.4
Pp3c23_9860 Physcomitrium patens HOM05D006036 ORTHO05D007736 1.0e-23 113.2 76 69.7
CBR_g54966 Chara braunii HOM05D006036 ORTHO05D007736 3.2e-22 108.2 70 71.4
Cre11.g468750 Chlamydomonas reinhardtii HOM05D006036 ORTHO05D007736 4.7e-21 104.4 76 61.8
Gohir.D08G155400 Gossypium hirsutum HOM05D006036 ORTHO05D007736 5.7e-19 97.4 50 90.0
Lalb_Chr03g0039551 Lupinus albus HOM05D006036 ORTHO05D007736 5.5e-14 80.9 64 56.2
PSO478G2400 Papaver somniferum HOM05D006036 ORTHO05D007736 4.7e-13 77.8 41 80.5
PSO782G0421 Papaver somniferum HOM05D006036 ORTHO05D007736 1.0e-12 76.6 55 63.6
Hma1.2p1_1122F.1_g259290 Hydrangea macrophylla HOM05D006036 ORTHO05D007736 1.4e-12 76.3 38 84.2
Nitab4.5_0000457g0290 Nicotiana tabacum HOM05D006036 ORTHO05D007736 1.2e-11 73.2 38 78.9
Lj1g0011795 Lotus japonicus HOM05D006036 ORTHO05D007736 1.5e-11 72.8 38 81.6
SGA_v2.0_scaffold153G37014 Striga asiatica HOM05D006036 ORTHO05D001464 1.5e-11 72.8 38 78.9
Gorai.004G161600 Gossypium raimondii HOM05D006036 ORTHO05D007736 4.4e-11 71.2 50 70.0
Ciclev10033315m.g Citrus clementina HOM05D006036 ORTHO05D007736 1.4e-09 66.2 82 48.8
COL.COLO4_12549 Corchorus olitorius HOM05D006036 ORTHO05D007736 5.4e-09 64.3 38 78.9
MCO13G087 Micromonas commoda HOM05D006036 ORTHO05D007736 1.3e-07 59.7 82 45.1


User provided reference genes

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