Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN06G2832 Fragaria x ananassa HOM05D003984 ORTHO05D004740 1.8e-142 509.2 260 100.0
FAN03G0045 Fragaria x ananassa HOM05D003984 ORTHO05D004740 5.4e-142 507.7 260 99.2
FvH4_7g20520 Fragaria vesca HOM05D003984 ORTHO05D004740 9.2e-142 506.9 260 99.2
FAN10G1795 Fragaria x ananassa HOM05D003984 ORTHO05D004740 1.6e-141 506.1 260 98.8
RcHm_v2.0_Chr1g0364411 Rosa chinensis HOM05D003984 ORTHO05D004740 9.8e-136 486.9 267 93.6
Prupe.2G220800 Prunus persica HOM05D003984 ORTHO05D004740 5.6e-131 471.1 267 90.3
MD07G1182100 Malus domestica HOM05D003984 ORTHO05D004740 8.0e-130 467.2 267 89.9
MD01G1114200 Malus domestica HOM05D003984 ORTHO05D004740 8.9e-129 463.8 267 89.5
CANSAT56G1305 Cannabis sativa HOM05D003984 ORTHO05D004740 6.0e-125 451.1 267 86.1
QL08p057270 Quercus lobata HOM05D003984 ORTHO05D004740 3.0e-124 448.7 266 85.7
CiPaw.01G278000 Carya illinoinensis HOM05D003984 ORTHO05D004740 5.6e-123 444.5 267 84.3
Manes.10G040500 Manihot esculenta HOM05D003984 ORTHO05D004740 5.6e-123 444.5 267 86.1
Cfa001574 Carpinus fangiana HOM05D003984 ORTHO05D004740 2.8e-122 442.2 267 85.0
Dinv11820 Davidia involucrata HOM05D003984 ORTHO05D004740 2.8e-122 442.2 267 84.6
CiPaw.02G177500 Carya illinoinensis HOM05D003984 ORTHO05D004740 8.1e-122 440.7 268 85.8
ClCG09G020350 Citrullus lanatus HOM05D003984 ORTHO05D004740 2.3e-121 439.1 267 83.9
COL.COLO4_23777 Corchorus olitorius HOM05D003984 ORTHO05D004740 2.3e-121 439.1 267 84.6
Solyc04g049710.3 Solanum lycopersicum HOM05D003984 ORTHO05D004740 3.1e-121 438.7 264 83.7
Sopen04g019960 Solanum pennellii HOM05D003984 ORTHO05D004740 5.2e-121 438.0 264 83.7
Dinv31376 Davidia involucrata HOM05D003984 ORTHO05D004740 8.9e-121 437.2 267 83.9
Nitab4.5_0000830g0100 Nicotiana tabacum HOM05D003984 ORTHO05D004740 8.9e-121 437.2 262 84.0
Manes.07G104700 Manihot esculenta HOM05D003984 ORTHO05D004740 1.5e-120 436.4 267 84.3
CSS0011111 Camellia sinensis var. sinensis HOM05D003984 ORTHO05D004740 3.4e-120 435.3 267 84.3
CsaV3_5G026080 Cucumis sativus L. HOM05D003984 ORTHO05D004740 3.4e-120 435.3 267 83.1
Nitab4.5_0001248g0030 Nicotiana tabacum HOM05D003984 ORTHO05D004740 3.4e-120 435.3 262 83.6
Atru.chr12.610 Acer truncatum HOM05D003984 ORTHO05D004740 4.4e-120 434.9 267 84.6
CSS0036351 Camellia sinensis var. sinensis HOM05D003984 ORTHO05D004740 4.4e-120 434.9 267 82.0
Lj8A94T49 Lonicera japonica HOM05D003984 ORTHO05D004740 5.8e-120 434.5 263 84.8
SGA_v2.0_scaffold62G21447 Striga asiatica HOM05D003984 ORTHO05D004740 5.8e-120 434.5 261 84.3
CSS0025505 Camellia sinensis var. sinensis HOM05D003984 ORTHO05D004740 7.5e-120 434.1 267 82.0
Thecc.10G065000 Theobroma cacao HOM05D003984 ORTHO05D004740 7.5e-120 434.1 267 83.9
Peaxi162Scf01024g00120 Petunia axillaris HOM05D003984 ORTHO05D004740 8.3e-119 430.6 264 83.0
MSTRG.27450 Avicennia marina HOM05D003984 ORTHO05D004740 1.1e-118 430.3 267 82.8
Peaxi162Scf00195g00824 Petunia axillaris HOM05D003984 ORTHO05D004740 1.1e-118 430.3 262 84.0
Sed0003028 Sechium edule HOM05D003984 ORTHO05D004740 1.1e-118 430.3 267 81.6
Potri.008G046000 Populus trichocarpa HOM05D003984 ORTHO05D004740 2.4e-118 429.1 267 83.5
GSVIVG01032647001 Vitis vinifera HOM05D003984 ORTHO05D004740 3.2e-118 428.7 267 82.8
Actinidia13840 Actinidia chinensis HOM05D003984 ORTHO05D004740 4.1e-118 428.3 262 83.2
Cc09_g02350 Coffea canephora HOM05D003984 ORTHO05D004740 5.4e-118 427.9 267 81.3
Oeu055063.1 Olea europaea HOM05D003984 ORTHO05D004740 3.5e-117 425.2 267 80.9
Ciclev10032445m.g Citrus clementina HOM05D003984 ORTHO05D004740 6.0e-117 424.5 268 82.8
Migut.F02015 Erythranthe guttata HOM05D003984 ORTHO05D004740 7.8e-117 424.1 261 82.0
Duzib114G0791 Durio zibethinus HOM05D003984 ORTHO05D004740 1.0e-116 423.7 267 83.9
Medtr1g116240 Medicago truncatula HOM05D003984 ORTHO05D004740 1.0e-116 423.7 267 81.6
Lj5g0020432 Lotus japonicus HOM05D003984 ORTHO05D004740 1.3e-116 423.3 264 82.2
TAR633G2252 Trochodendron aralioides HOM05D003984 ORTHO05D004740 1.7e-116 422.9 267 80.9
Duzib128G0096 Durio zibethinus HOM05D003984 ORTHO05D004740 3.0e-116 422.2 268 84.0
Potri.010G215500 Populus trichocarpa HOM05D003984 ORTHO05D004740 3.9e-116 421.8 269 83.3
Rhsim09G0154900 Rhododendron simsii HOM05D003984 ORTHO05D004740 5.1e-116 421.4 315 71.7
Lalb_Chr21g0307521 Lupinus albus HOM05D003984 ORTHO05D004740 8.6e-116 420.6 274 80.7
TPR.G10390 Trifolium pratense HOM05D003984 ORTHO05D004740 1.1e-115 420.2 268 81.3
Lalb_Chr06g0164371 Lupinus albus HOM05D003984 ORTHO05D004740 4.3e-115 418.3 267 82.0
CSS0002243 Camellia sinensis var. sinensis HOM05D003984 ORTHO05D004740 5.6e-115 417.9 255 85.1
Psat6g240040 Pisum sativum HOM05D003984 ORTHO05D004740 5.6e-115 417.9 264 81.8
TWI15G0393 Tripterygium wilfordii HOM05D003984 ORTHO05D004740 5.6e-115 417.9 264 80.7
Sabra08G0032300 Salix brachista HOM05D003984 ORTHO05D004740 9.5e-115 417.2 275 80.4
Nitab4.5_0000691g0240 Nicotiana tabacum HOM05D003984 ORTHO05D004740 1.1e-113 413.7 264 80.3
DCAR_019150 Daucus carota HOM05D003984 ORTHO05D004740 2.3e-113 412.5 267 78.7
Glyma.10G294300 Glycine max HOM05D003984 ORTHO05D004740 8.9e-113 410.6 267 79.4
Gorai.012G092700 Gossypium raimondii HOM05D003984 ORTHO05D004740 1.2e-112 410.2 267 79.8
Lalb_Chr02g0144171 Lupinus albus HOM05D003984 ORTHO05D004740 2.6e-112 409.1 270 78.9
AUR62036011 Chenopodium quinoa HOM05D003984 ORTHO05D004740 3.4e-112 408.7 260 80.8
PGSC0003DMG400032551 Solanum tuberosum HOM05D003984 ORTHO05D004740 3.4e-112 408.7 264 79.2
SGA_v2.0_scaffold329G48849 Striga asiatica HOM05D003984 ORTHO05D004740 4.4e-112 408.3 268 79.9
VMungo0720G0811 Vigna mungo HOM05D003984 ORTHO05D004740 5.8e-112 407.9 265 80.8
Gohir.A05G343700 Gossypium hirsutum HOM05D003984 ORTHO05D004740 7.6e-112 407.5 267 79.4
Nn2g10608 Nelumbo nucifera HOM05D003984 ORTHO05D004740 7.6e-112 407.5 269 76.6
DCAR_015251 Daucus carota HOM05D003984 ORTHO05D004740 9.9e-112 407.1 250 81.6
CAN.G186.31 Capsicum annuum HOM05D003984 ORTHO05D004740 2.2e-111 406.0 264 78.0
Glyma.20G244200 Glycine max HOM05D003984 ORTHO05D004740 2.2e-111 406.0 262 80.2
EL10Ac2g03538 Beta vulgaris HOM05D003984 ORTHO05D004740 4.9e-111 404.8 261 80.5
Solyc04g009550.3 Solanum lycopersicum HOM05D003984 ORTHO05D004740 1.1e-110 403.7 264 78.0
Nitab4.5_0004104g0120 Nicotiana tabacum HOM05D003984 ORTHO05D004740 1.4e-110 403.3 250 81.6
Hund22456 Selenicereus undatus HOM05D003984 ORTHO05D004740 1.4e-110 403.3 268 80.6
arahy.Tifrunner.gnm1.ann1.V3HSKN Arachis hypogaea HOM05D003984 ORTHO05D004740 2.4e-110 402.5 267 79.4
Eucgr.J01137 Eucalyptus grandis HOM05D003984 ORTHO05D004740 4.1e-110 401.7 267 79.0
Phvul.007G005800 Phaseolus vulgaris HOM05D003984 ORTHO05D004740 4.1e-110 401.7 268 79.1
PGR044G2197 Punica granatum HOM05D003984 ORTHO05D004740 5.4e-110 401.4 260 80.4
Migut.F01787 Erythranthe guttata HOM05D003984 ORTHO05D004740 7.1e-110 401.0 262 79.8
Gohir.D10G216200 Gossypium hirsutum HOM05D003984 ORTHO05D004740 1.2e-109 400.2 267 79.0
Gorai.011G241800 Gossypium raimondii HOM05D003984 ORTHO05D004740 2.1e-109 399.4 267 79.0
TWI63G0288 Tripterygium wilfordii HOM05D003984 ORTHO05D004740 6.0e-109 397.9 257 79.0
ECA238G2056 Erigeron canadensis HOM05D003984 ORTHO05D004740 7.8e-109 397.5 259 79.5
HanXRQChr12g0367731 Helianthus annuus HOM05D003984 ORTHO05D004740 1.0e-108 397.1 267 77.9
Sed0000226 Sechium edule HOM05D003984 ORTHO05D004740 1.3e-108 396.7 264 78.0
Nn2g12956 Nelumbo nucifera HOM05D003984 ORTHO05D004740 3.0e-108 395.6 268 76.5
Ah.10g033080 Amaranthus hybridus HOM05D003984 ORTHO05D004740 3.9e-108 395.2 284 74.3
Gohir.A10G208060 Gossypium hirsutum HOM05D003984 ORTHO05D004740 3.9e-108 395.2 267 78.7
TAR623G0696 Trochodendron aralioides HOM05D003984 ORTHO05D004740 3.9e-108 395.2 251 79.3
Lj1A928T58 Lonicera japonica HOM05D003984 ORTHO05D004740 3.3e-107 392.1 303 70.0
THA.LOC104825886 Tarenaya hassleriana HOM05D003984 ORTHO05D004740 4.3e-107 391.7 264 76.5
AUR62041612 Chenopodium quinoa HOM05D003984 ORTHO05D004740 7.3e-107 391.0 287 72.5
Haze_16954 Corylus avellana HOM05D003984 ORTHO05D004740 9.6e-107 390.6 238 83.6
Oeu057248.1 Olea europaea HOM05D003984 ORTHO05D004740 2.1e-106 389.4 254 77.6
Aqoxy4G03159 Aquilegia oxysepala HOM05D003984 ORTHO05D004740 1.8e-105 386.3 279 73.8
Sabra10G0166500 Salix brachista HOM05D003984 ORTHO05D004740 1.8e-105 386.3 284 74.3
THA.LOC104824242 Tarenaya hassleriana HOM05D003984 ORTHO05D004740 8.9e-105 384.0 262 76.3
HanXRQChr07g0200921 Helianthus annuus HOM05D003984 ORTHO05D004740 3.4e-104 382.1 260 76.5
Lsat_1_v5_gn_2_115481 Lactuca sativa HOM05D003984 ORTHO05D004740 3.4e-104 382.1 252 79.4
PSO339G2647 Papaver somniferum HOM05D003984 ORTHO05D004740 5.8e-104 381.3 269 75.1
PSO339G0239 Papaver somniferum HOM05D003984 ORTHO05D004740 3.8e-103 378.6 267 74.5
PSO384G2137 Papaver somniferum HOM05D003984 ORTHO05D004740 8.4e-103 377.5 267 74.2
arahy.Tifrunner.gnm1.ann1.B234YK Arachis hypogaea HOM05D003984 ORTHO05D004740 2.4e-102 375.9 320 65.9
SalBow3G2899 Salvia bowleyana HOM05D003984 ORTHO05D004740 2.4e-102 375.9 256 76.6
THA.LOC104810167 Tarenaya hassleriana HOM05D003984 ORTHO05D004740 1.2e-101 373.6 250 76.4
ATR0594G132 Amborella trichopoda HOM05D003984 ORTHO05D004740 1.5e-99 366.7 261 72.8
Gohir.D04G082100 Gossypium hirsutum HOM05D003984 ORTHO05D004740 2.1e-98 362.8 220 83.6
Os11g0102600 Oryza sativa ssp. japonica HOM05D003984 ORTHO05D004740 2.8e-98 362.5 258 72.5
Os12g0102200 Oryza sativa ssp. japonica HOM05D003984 ORTHO05D004740 2.8e-98 362.5 258 72.5
HanXRQChr14g0460861 Helianthus annuus HOM05D003984 ORTHO05D004740 6.2e-98 361.3 259 75.7
Lsat_1_v5_gn_8_21240 Lactuca sativa HOM05D003984 ORTHO05D004740 8.1e-98 360.9 268 71.6
CDE09G0608 Ceratophyllum demersum HOM05D003984 ORTHO05D004740 4.0e-97 358.6 268 70.9
HPP92_017944 Vanilla planifolia HOM05D003984 ORTHO05D004740 1.2e-96 357.1 265 70.6
Lj1C926T5 Lonicera japonica HOM05D003984 ORTHO05D004740 1.5e-96 356.7 263 71.9
Ca_11380_v3 Cicer arietinum L. HOM05D003984 ORTHO05D004740 1.7e-95 353.2 275 70.5
C06p22550 Brassica napus HOM05D003984 ORTHO05D004740 4.9e-95 351.7 262 70.2
Zm00001eb094350 Zea mays HOM05D003984 ORTHO05D004740 1.4e-94 350.1 258 71.3
Aa31sc33G70 Aethionema arabicum HOM05D003984 ORTHO05D004740 1.9e-94 349.7 266 70.3
BcaC08g44716 Brassica carinata HOM05D003984 ORTHO05D004740 3.2e-94 349.0 262 69.5
Thhalv10010647m.g Eutrema salsugineum HOM05D003984 ORTHO05D004740 4.2e-94 348.6 262 69.8
HPP92_019786 Vanilla planifolia HOM05D003984 ORTHO05D004740 4.2e-94 348.6 265 67.9
MELO3C025490.2 Cucumis melo HOM05D003984 ORTHO05D004740 5.4e-94 348.2 206 86.4
BcaB02g07705 Brassica carinata HOM05D003984 ORTHO05D004740 2.1e-93 346.3 262 69.8
A07p22390 Brassica napus HOM05D003984 ORTHO05D004740 2.1e-93 346.3 262 69.8
AL5G36110 Arabidopsis lyrata HOM05D003984 ORTHO05D004740 2.7e-93 345.9 262 69.1
AL5G36120 Arabidopsis lyrata HOM05D003984 ORTHO05D004740 2.7e-93 345.9 262 69.8
AT3G55000 Arabidopsis thaliana HOM05D003984 ORTHO05D004740 1.0e-92 344.0 262 69.1
BolC6t37445H Brassica oleracea HOM05D003984 ORTHO05D004740 1.3e-92 343.6 262 69.1
Zm00001eb163130 Zea mays HOM05D003984 ORTHO05D004740 1.3e-92 343.6 258 70.5
Carub.0005s2162 Capsella rubella HOM05D003984 ORTHO05D004740 6.7e-92 341.3 262 68.7
MSTRG.9196 Avicennia marina HOM05D003984 ORTHO05D004740 8.7e-92 340.9 199 86.9
Carub.0005s2163 Capsella rubella HOM05D003984 ORTHO05D004740 1.5e-91 340.1 262 69.8
CARHR165000 Cardamine hirsuta HOM05D003984 ORTHO05D004740 3.3e-91 339.0 262 69.8
Sc20g0002240 Simmondsia chinensis HOM05D003984 ORTHO05D004740 3.3e-91 339.0 260 70.8
Sp5g07430 Schrenkiella parvula HOM05D003984 ORTHO05D004740 9.6e-91 337.4 262 70.2
Sp5g07420 Schrenkiella parvula HOM05D003984 ORTHO05D004740 1.3e-90 337.0 263 68.8
AT3G55005 Arabidopsis thaliana HOM05D003984 ORTHO05D004740 3.7e-90 335.5 264 68.6
BraA07t29915Z Brassica rapa HOM05D003984 ORTHO05D004740 6.2e-90 334.7 281 65.1
unitig_0.g190 Utricularia gibba HOM05D003984 ORTHO05D004740 8.1e-90 334.3 225 76.0
CDE02G0952 Ceratophyllum demersum HOM05D003984 ORTHO05D004740 4.0e-89 332.0 253 69.6
FAN06G1180 Fragaria x ananassa HOM05D003984 ORTHO05D004740 4.5e-88 328.6 167 100.0
Sopen04g004710 Solanum pennellii HOM05D003984 ORTHO05D004740 4.2e-86 322.0 198 81.8
CARHR165010 Cardamine hirsuta HOM05D003984 ORTHO05D004740 8.7e-84 314.3 266 65.4
BraA09t40255Z Brassica rapa HOM05D003984 ORTHO05D004740 2.2e-79 299.7 262 62.2
C08p30240 Brassica napus HOM05D003984 ORTHO05D004740 2.9e-79 299.3 260 63.5
Sc20g0002230 Simmondsia chinensis HOM05D003984 ORTHO05D004740 9.3e-78 294.3 189 80.4
A09p48020 Brassica napus HOM05D003984 ORTHO05D004740 3.5e-77 292.4 262 61.1
Thhalv10010676m.g Eutrema salsugineum HOM05D003984 ORTHO05D004740 4.6e-77 292.0 241 68.0
BcaNung04652 Brassica carinata HOM05D003984 ORTHO05D004740 1.0e-76 290.8 260 61.9
FAN01G2342 Fragaria x ananassa HOM05D003984 ORTHO05D004740 1.1e-75 287.3 144 97.9
BcaB01g00136 Brassica carinata HOM05D003984 ORTHO05D004740 3.3e-75 285.8 260 61.2
BolC8t50631H Brassica oleracea HOM05D003984 ORTHO05D004740 1.1e-73 280.8 259 59.5
AagrBONN_evm.TU.Sc2ySwM_344.1695 Anthoceros agrestis HOM05D003984 ORTHO05D004740 1.3e-42 177.6 212 51.4
Mapoly0066s0078 Marchantia polymorpha HOM05D003984 ORTHO05D004740 3.2e-38 162.9 148 57.4
Pp3c14_5580 Physcomitrium patens HOM05D003984 ORTHO05D004740 5.5e-38 162.2 194 45.4
Actinidia29191 Actinidia chinensis HOM05D003984 ORTHO05D004740 5.4e-33 145.6 123 67.5
SEGI_35779 Sequoiadendron giganteum HOM05D003984 ORTHO05D004740 2.0e-32 143.7 244 41.4
FAN06G2469 Fragaria x ananassa HOM05D003984 ORTHO05D004740 4.5e-32 142.5 74 98.6
Cpa.g.sc1.281 Carica papaya HOM05D003984 ORTHO05D004740 1.7e-31 140.6 117 65.0
TAR624G0784 Trochodendron aralioides HOM05D003984 ORTHO05D004740 3.3e-30 136.3 93 73.1
SEGI_13922 Sequoiadendron giganteum HOM05D003984 ORTHO05D004740 6.3e-26 122.1 76 80.3
CBR_g37750 Chara braunii HOM05D000019 ORTHO05D000002 2.7e-24 116.7 263 36.1
SMO356G0399 Selaginella moellendorffii HOM05D003984 ORTHO05D004740 1.7e-18 97.4 185 36.8
CBR_g10977 Chara braunii HOM05D003984 ORTHO05D004740 1.9e-14 84.0 238 29.4
HanXRQChr17g0557371 Helianthus annuus HOM05D000549 ORTHO05D004740 1.9e-14 84.0 41 90.2
RcHm_v2.0_Chr2g0140211 Rosa chinensis HOM05D003984 ORTHO05D004740 1.8e-12 77.4 43 79.1
Nn6g33815 Nelumbo nucifera HOM05D003984 ORTHO05D004740 1.2e-11 74.7 41 80.5
CSS0046661 Camellia sinensis var. sinensis HOM05D003984 ORTHO05D004740 1.5e-11 74.3 40 82.5
AUR62035988 Chenopodium quinoa HOM05D003984 ORTHO05D004740 8.3e-10 68.6 93 46.2
SHI42769 Sapria himalayana HOM05D003984 ORTHO05D004740 3.5e-08 63.2 127 41.7
PRCOL_00000040 Prasinoderma coloniale HOM05D003984 ORTHO05D004740 7.8e-08 62.0 138 34.1
MCO05G642 Micromonas commoda HOM05D003984 ORTHO05D004740 3.9e-07 59.7 86 34.9


User provided reference genes

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