Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN06G2746 Fragaria x ananassa HOM05D004561 ORTHO05D005315 9.1e-145 516.9 267 100.0
FvH4_7g18930 Fragaria vesca HOM05D004561 ORTHO05D005315 7.0e-137 490.7 254 100.0
FAN06G3856 Fragaria x ananassa HOM05D004561 ORTHO05D005315 7.0e-137 490.7 254 100.0
FAN08G3218 Fragaria x ananassa HOM05D004561 ORTHO05D005315 5.5e-134 481.1 254 98.4
FAN04G2378 Fragaria x ananassa HOM05D004561 ORTHO05D005315 4.4e-131 471.5 250 98.4
FvH4_5g18940 Fragaria vesca HOM05D004561 ORTHO05D005315 7.5e-131 470.7 254 96.1
RcHm_v2.0_Chr7g0203331 Rosa chinensis HOM05D004561 ORTHO05D005315 7.0e-121 437.6 254 87.8
FAN13G2292 Fragaria x ananassa HOM05D004561 ORTHO05D005315 2.2e-114 416.0 200 98.0
FAN18G3337 Fragaria x ananassa HOM05D004561 ORTHO05D005315 2.2e-114 416.0 200 98.0
Prupe.5G069900 Prunus persica HOM05D004561 ORTHO05D005315 2.0e-112 409.5 254 76.0
CiPaw.15G149700 Carya illinoinensis HOM05D004561 ORTHO05D005315 8.9e-100 367.5 254 68.1
Hma1.2p1_0018F.1_g012650 Hydrangea macrophylla HOM05D004561 ORTHO05D005315 3.7e-98 362.1 254 65.7
QL09p040874 Quercus lobata HOM05D004561 ORTHO05D005315 6.4e-98 361.3 253 67.2
CSS0045511 Camellia sinensis var. sinensis HOM05D004561 ORTHO05D005315 7.8e-96 354.4 254 66.1
MD16G1270300 Malus domestica HOM05D004561 ORTHO05D005315 7.8e-96 354.4 200 80.5
Dinv14864 Davidia involucrata HOM05D004561 ORTHO05D005315 1.1e-94 350.5 254 67.3
Potri.012G041700 Populus trichocarpa HOM05D004561 ORTHO05D005315 1.1e-94 350.5 256 65.2
GSVIVG01028605001 Vitis vinifera HOM05D004561 ORTHO05D005315 5.6e-94 348.2 256 64.8
Sabra12G0028700 Salix brachista HOM05D004561 ORTHO05D005315 4.7e-93 345.1 256 64.1
Thecc.01G124300 Theobroma cacao HOM05D004561 ORTHO05D005315 1.1e-92 344.0 254 65.0
Eucgr.B03172 Eucalyptus grandis HOM05D004561 ORTHO05D005315 5.2e-92 341.7 258 62.0
COL.COLO4_13996 Corchorus olitorius HOM05D004561 ORTHO05D005315 3.4e-91 339.0 254 65.0
TWI15G0666 Tripterygium wilfordii HOM05D004561 ORTHO05D005315 3.4e-91 339.0 254 63.0
Sed0015683 Sechium edule HOM05D004561 ORTHO05D005315 2.2e-90 336.3 255 63.9
Manes.08G062966 Manihot esculenta HOM05D004561 ORTHO05D005315 3.7e-90 335.5 254 63.0
HanXRQChr15g0480201 Helianthus annuus HOM05D004561 ORTHO05D005315 6.4e-90 334.7 254 61.0
Lj1A1185G61 Lonicera japonica HOM05D004561 ORTHO05D005315 8.4e-90 334.3 292 57.5
CsaV3_1G002780 Cucumis sativus L. HOM05D004561 ORTHO05D005315 3.2e-89 332.4 254 63.0
Ciclev10002226m.g Citrus clementina HOM05D004561 ORTHO05D005315 7.1e-89 331.3 254 62.2
Atru.chr13.142 Acer truncatum HOM05D004561 ORTHO05D005315 9.2e-89 330.9 253 64.0
TAR628G1415 Trochodendron aralioides HOM05D004561 ORTHO05D005315 1.2e-88 330.5 256 62.5
TWI81G0190 Tripterygium wilfordii HOM05D004561 ORTHO05D005315 1.6e-88 330.1 254 62.2
MSTRG.11225 Avicennia marina HOM05D004561 ORTHO05D005315 3.5e-88 328.9 254 61.4
PGSC0003DMG400009224 Solanum tuberosum HOM05D004561 ORTHO05D005315 3.5e-88 328.9 254 61.4
Solyc08g074360.3 Solanum lycopersicum HOM05D004561 ORTHO05D005315 7.8e-88 327.8 254 60.2
Lalb_Chr12g0208781 Lupinus albus HOM05D004561 ORTHO05D005315 2.3e-87 326.2 255 62.0
MELO3C017214.2 Cucumis melo HOM05D004561 ORTHO05D005315 3.9e-87 325.5 254 61.8
MSTRG.22847 Avicennia marina HOM05D004561 ORTHO05D005315 5.1e-87 325.1 254 59.8
Migut.I00621 Erythranthe guttata HOM05D004561 ORTHO05D005315 6.6e-87 324.7 254 63.4
FAN18G2677 Fragaria x ananassa HOM05D004561 ORTHO05D005315 1.1e-86 323.9 179 88.3
CAN.G370.25 Capsicum annuum HOM05D004561 ORTHO05D005315 1.5e-86 323.6 254 60.2
Gorai.012G033300 Gossypium raimondii HOM05D004561 ORTHO05D005315 1.5e-86 323.6 254 61.4
Sopen08g023020 Solanum pennellii HOM05D004561 ORTHO05D005315 1.5e-86 323.6 254 60.6
Solyc11g017400.2 Solanum lycopersicum HOM05D004561 ORTHO05D005315 3.3e-86 322.4 254 61.0
Gohir.A05G386400 Gossypium hirsutum HOM05D004561 ORTHO05D005315 5.6e-86 321.6 254 61.0
Gohir.D04G023500 Gossypium hirsutum HOM05D004561 ORTHO05D005315 7.3e-86 321.2 254 61.0
Lsat_1_v5_gn_7_30581 Lactuca sativa HOM05D004561 ORTHO05D005315 9.6e-86 320.9 255 60.4
Lj4g0004659 Lotus japonicus HOM05D004561 ORTHO05D005315 9.6e-86 320.9 254 61.4
ClCG06G015750 Citrullus lanatus HOM05D000113 ORTHO05D002571 2.8e-85 319.3 241 62.7
Glyma.08G081300 Glycine max HOM05D004561 ORTHO05D005315 4.7e-85 318.5 251 62.5
Sc18g0002470 Simmondsia chinensis HOM05D004561 ORTHO05D005315 4.7e-85 318.5 254 57.5
BraA07t30043Z Brassica rapa HOM05D004561 ORTHO05D005315 6.2e-85 318.2 254 59.4
Nitab4.5_0000422g0080 Nicotiana tabacum HOM05D004561 ORTHO05D005315 8.1e-85 317.8 244 63.1
Sp5g04590 Schrenkiella parvula HOM05D004561 ORTHO05D005315 1.4e-84 317.0 253 60.5
Medtr4g094538 Medicago truncatula HOM05D004561 ORTHO05D005315 1.8e-84 316.6 254 61.4
Psat1g047920 Pisum sativum HOM05D004561 ORTHO05D005315 1.8e-84 316.6 255 62.4
TPR.G30372 Trifolium pratense HOM05D004561 ORTHO05D005315 2.4e-84 316.2 254 61.4
Peaxi162Scf00152g00158 Petunia axillaris HOM05D004561 ORTHO05D005315 4.0e-84 315.5 257 59.5
SalBow3G1851 Salvia bowleyana HOM05D004561 ORTHO05D005315 5.2e-84 315.1 268 57.5
THA.LOC104822320 Tarenaya hassleriana HOM05D004561 ORTHO05D005315 8.9e-84 314.3 255 60.0
PGSC0003DMG403029595 Solanum tuberosum HOM05D004561 ORTHO05D005315 5.8e-83 311.6 241 60.6
A07p23920 Brassica napus HOM05D004561 ORTHO05D005315 1.3e-82 310.5 253 58.5
VMungo0251G0557 Vigna mungo HOM05D004561 ORTHO05D005315 1.3e-82 310.5 200 71.0
Glyma.05G126500 Glycine max HOM05D004561 ORTHO05D005315 2.2e-82 309.7 273 56.4
Cc03_g07430 Coffea canephora HOM05D004561 ORTHO05D005315 4.9e-82 308.5 256 59.8
BolC6t37673H Brassica oleracea HOM05D004561 ORTHO05D005315 8.4e-82 307.8 253 58.5
Nn5g27375 Nelumbo nucifera HOM05D004561 ORTHO05D005315 8.4e-82 307.8 254 56.7
Oeu031248.3 Olea europaea HOM05D004561 ORTHO05D005315 8.4e-82 307.8 286 54.5
BcaB02g07548 Brassica carinata HOM05D004561 ORTHO05D005315 1.1e-81 307.4 273 54.9
AUR62010959 Chenopodium quinoa HOM05D004561 ORTHO05D005315 1.4e-81 307.0 240 61.2
CARHR168490 Cardamine hirsuta HOM05D004561 ORTHO05D005315 1.9e-81 306.6 253 58.5
SGA_v2.0_scaffold37G14646 Striga asiatica HOM05D004561 ORTHO05D005315 2.4e-81 306.2 238 60.9
ECA233G0879 Erigeron canadensis HOM05D004561 ORTHO05D005315 3.2e-81 305.8 254 55.9
Hund26218 Selenicereus undatus HOM05D004561 ORTHO05D005315 3.2e-81 305.8 200 69.5
AL5G39820 Arabidopsis lyrata HOM05D004561 ORTHO05D005315 7.1e-81 304.7 253 58.1
AUR62007426 Chenopodium quinoa HOM05D004561 ORTHO05D005315 9.3e-81 304.3 240 60.4
Carub.0005s2498 Capsella rubella HOM05D004561 ORTHO05D005315 6.0e-80 301.6 253 56.1
Rhsim06G0237000 Rhododendron simsii HOM05D004561 ORTHO05D005315 6.0e-80 301.6 291 51.5
AT3G58130 Arabidopsis thaliana HOM05D004561 ORTHO05D005315 1.0e-79 300.8 253 58.1
Aqoxy6G01699 Aquilegia oxysepala HOM05D004561 ORTHO05D005315 1.3e-79 300.4 254 57.9
Phvul.002G198500 Phaseolus vulgaris HOM05D004561 ORTHO05D005315 1.3e-79 300.4 194 71.6
C06p25150 Brassica napus HOM05D004561 ORTHO05D005315 1.1e-78 297.4 295 51.5
Thhalv10002077m.g Eutrema salsugineum HOM05D004561 ORTHO05D005315 1.5e-78 297.0 257 57.6
vmacro18667 Vaccinium macrocarpon HOM05D004561 ORTHO05D005315 1.5e-78 297.0 318 50.0
AT2G27340 Arabidopsis thaliana HOM05D004561 ORTHO05D005315 1.9e-78 296.6 251 57.0
PSO210G6857 Papaver somniferum HOM05D004561 ORTHO05D005315 7.3e-78 294.7 254 56.3
BcaC08g44900 Brassica carinata HOM05D004561 ORTHO05D005315 6.2e-77 291.6 253 56.1
Thhalv10002036m.g Eutrema salsugineum HOM05D004561 ORTHO05D005315 5.3e-76 288.5 254 56.3
RcHm_v2.0_Chr7g0203411 Rosa chinensis HOM05D004561 ORTHO05D005315 3.4e-75 285.8 225 63.6
Peaxi162Scf00310g00711 Petunia axillaris HOM05D004561 ORTHO05D005315 8.4e-74 281.2 236 58.5
EL10Ac8g18446 Beta vulgaris HOM05D004561 ORTHO05D005315 1.1e-73 280.8 242 56.6
AUR62021469 Chenopodium quinoa HOM05D004561 ORTHO05D005315 4.2e-73 278.9 198 65.7
SalBow1G5912 Salvia bowleyana HOM05D004561 ORTHO05D005315 4.2e-73 278.9 194 66.5
unitig_744.g24647 Utricularia gibba HOM05D004561 ORTHO05D005315 1.2e-72 277.3 268 53.0
C08p33660 Brassica napus HOM05D004561 ORTHO05D005315 1.0e-71 274.2 253 53.4
CDE04G2633 Ceratophyllum demersum HOM05D004561 ORTHO05D005315 1.3e-71 273.9 200 59.5
Lj6g0005186 Lotus japonicus HOM05D004561 ORTHO05D005315 2.5e-70 269.6 222 58.1
Zm00001eb433850 Zea mays HOM05D004561 ORTHO05D005315 3.3e-70 269.2 255 50.6
DCAR_002722 Daucus carota HOM05D004561 ORTHO05D005315 5.6e-70 268.5 183 66.7
ATR0661G441 Amborella trichopoda HOM05D004561 ORTHO05D005315 6.2e-69 265.0 254 53.1
Os04g0678800 Oryza sativa ssp. japonica HOM05D004561 ORTHO05D005315 9.9e-67 257.7 255 51.8
BcaC07g40276 Brassica carinata HOM05D004561 ORTHO05D005315 2.4e-65 253.1 202 59.4
Aa31LG10G12840 Aethionema arabicum HOM05D004561 ORTHO05D005315 1.6e-64 250.4 293 46.8
Sopen11g009350 Solanum pennellii HOM05D004561 ORTHO05D005315 2.1e-64 250.0 174 63.8
SHI05351 Sapria himalayana HOM05D004561 ORTHO05D005315 3.3e-62 242.7 203 56.2
arahy.Tifrunner.gnm1.ann1.AX2CN5 Arachis hypogaea HOM05D004561 ORTHO05D005315 1.7e-58 230.3 260 48.8
CAN.G1530.1 Capsicum annuum HOM05D004561 ORTHO05D005315 1.1e-57 227.6 188 56.9
A09p50910 Brassica napus HOM05D004561 ORTHO05D005315 1.9e-54 216.9 201 55.2
vmacro21453 Vaccinium macrocarpon HOM05D004561 ORTHO05D005315 4.3e-54 215.7 196 54.1
arahy.Tifrunner.gnm1.ann1.3X42ZC Arachis hypogaea HOM05D004561 ORTHO05D005315 1.8e-52 210.3 173 57.8
Pp3c13_19470 Physcomitrium patens HOM05D004561 ORTHO05D005315 6.9e-52 208.4 206 47.6
HPP92_027560 Vanilla planifolia HOM05D004561 ORTHO05D005315 2.6e-51 206.5 191 52.4
Cpa.g.sc437.1 Carica papaya HOM05D004561 ORTHO05D005315 8.4e-50 201.4 146 63.0
BolC8t50963H Brassica oleracea HOM05D004561 ORTHO05D005315 1.1e-49 201.1 172 55.2
Carub.0339s0001 Capsella rubella HOM05D004561 ORTHO05D005315 5.1e-47 192.2 134 64.9
AUR62002652 Chenopodium quinoa HOM05D004561 ORTHO05D005315 1.1e-46 191.0 190 49.5
ECA236G3170 Erigeron canadensis HOM05D004561 ORTHO05D005315 1.1e-46 191.0 135 60.7
AagrBONN_evm.TU.Sc2ySwM_368.3407 Anthoceros agrestis HOM05D004561 ORTHO05D005315 1.9e-46 190.3 211 46.9
Zm00001eb066050 Zea mays HOM05D004561 ORTHO05D005315 1.6e-45 187.2 187 49.7
BcaC07g40185 Brassica carinata HOM05D004561 ORTHO05D005315 2.2e-45 186.8 199 49.2
Haze_18936 Corylus avellana HOM05D004561 ORTHO05D005315 2.2e-45 186.8 169 55.6
PSO761G0502 Papaver somniferum HOM05D004561 ORTHO05D005315 6.3e-45 185.3 179 52.0
CiPaw.16G098200 Carya illinoinensis HOM05D004561 ORTHO05D005315 5.3e-44 182.2 152 56.6
MD06G1059000 Malus domestica HOM05D004561 ORTHO05D005315 1.7e-42 177.2 108 74.1
Nitab4.5_0000560g0110 Nicotiana tabacum HOM05D004561 ORTHO05D005315 1.7e-42 177.2 154 56.5
Mapoly0029s0047 Marchantia polymorpha HOM05D004561 ORTHO05D005315 2.5e-41 173.3 198 44.9
Sopen08g022960 Solanum pennellii HOM05D004561 ORTHO05D005315 4.1e-36 156.0 133 57.9
Hund02231 Selenicereus undatus HOM05D004561 ORTHO05D005315 1.2e-35 154.5 185 45.4
CSS0036958 Camellia sinensis var. sinensis HOM05D004561 ORTHO05D005315 1.2e-32 144.4 86 73.3
Carub.0008s0419 Capsella rubella HOM05D004561 ORTHO05D005315 1.6e-32 144.1 128 53.9
CSS0005948 Camellia sinensis var. sinensis HOM05D004561 ORTHO05D005315 7.9e-32 141.7 86 72.1
CSS0005045 Camellia sinensis var. sinensis HOM05D004561 ORTHO05D005315 1.0e-31 141.4 86 72.1
CSS0006634 Camellia sinensis var. sinensis HOM05D004561 ORTHO05D005315 3.0e-31 139.8 86 69.8
Hund26251 Selenicereus undatus HOM05D004561 ORTHO05D005315 8.8e-31 138.3 103 62.1
MCO09G807 Micromonas commoda HOM05D004561 ORTHO05D005315 4.4e-30 136.0 204 39.7
SalBow1G4548 Salvia bowleyana HOM05D004561 ORTHO05D005315 2.6e-27 126.7 108 54.6
Sopen05g006540 Solanum pennellii HOM05D004561 ORTHO05D005315 1.9e-25 120.6 142 45.1
arahy.Tifrunner.gnm1.ann1.Y05SLV Arachis hypogaea HOM05D004561 ORTHO05D005315 3.0e-23 113.2 90 62.2
CBR_g12600 Chara braunii HOM05D005240 ORTHO05D006471 4.0e-23 112.8 262 31.3
Cre06.g300100 Chlamydomonas reinhardtii HOM05D004561 ORTHO05D005315 1.1e-22 111.3 247 31.6
SalBow1G7315 Salvia bowleyana HOM05D004561 ORTHO05D005315 2.0e-22 110.5 241 34.0
RcHm_v2.0_Chr7g0204201 Rosa chinensis HOM05D004561 ORTHO05D005315 3.3e-22 109.8 83 75.9
SalBow1G5331 Salvia bowleyana HOM05D004561 ORTHO05D005315 1.3e-21 107.8 67 65.7
PRCOL_00001899 Prasinoderma coloniale HOM05D004561 ORTHO05D005315 1.7e-21 107.5 209 32.1
RcHm_v2.0_Chr7g0204241 Rosa chinensis HOM05D004561 ORTHO05D005315 1.7e-21 107.5 90 61.1
SalBow1G4039 Salvia bowleyana HOM05D004561 ORTHO05D005315 1.7e-21 107.5 67 61.2
SalBow1G2796 Salvia bowleyana HOM05D004561 ORTHO05D005315 3.7e-21 106.3 67 64.2
Cpa.g.c32558.1 Carica papaya HOM05D004561 ORTHO05D005315 8.2e-21 105.1 65 70.8
Nitab4.5_0013603g0010 Nicotiana tabacum HOM05D004561 ORTHO05D005315 3.5e-19 99.8 72 62.5
MBI08_g32523_MAGBIO Magnolia biondii HOM05D004561 ORTHO05D005315 1.7e-18 97.4 69 62.3
Solyc05g010730.3 Solanum lycopersicum HOM05D004561 ORTHO05D005315 2.5e-17 93.6 66 63.6
SEGI_12631 Sequoiadendron giganteum HOM05D004561 ORTHO05D005315 7.2e-17 92.0 83 49.4
FvH4_5g18980 Fragaria vesca HOM05D004561 ORTHO05D005315 1.7e-13 80.9 48 77.1
SalBow1G0427 Salvia bowleyana HOM05D006885 ORTHO05D008606 2.8e-13 80.1 59 57.6
SalBow1G6765 Salvia bowleyana HOM05D004561 ORTHO05D005315 2.4e-12 77.0 84 48.8
SHI05852 Sapria himalayana HOM05D000002 ORTHO05D000001 2.2e-10 70.5 77 50.6
Ca_17309_v3 Cicer arietinum L. HOM05D002967 ORTHO05D003281 3.2e-09 66.6 60 48.3
SHI05350 Sapria himalayana HOM05D004561 ORTHO05D005315 1.8e-07 60.8 137 29.2
Cc05_g02560 Coffea canephora HOM05D004561 ORTHO05D005315 2.3e-07 60.5 77 42.9


User provided reference genes

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