Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN06G2635 Fragaria x ananassa HOM05D001384 ORTHO05D001215 5.9e-23 110.5 81 100.0
FAN06G3780 Fragaria x ananassa HOM05D001384 ORTHO05D001215 1.1e-21 106.3 81 98.8
FAN01G1051 Fragaria x ananassa HOM05D001384 ORTHO05D001215 9.5e-21 103.2 84 89.3
FAN10G1694 Fragaria x ananassa HOM05D001384 ORTHO05D001215 1.6e-20 102.4 82 96.3
FAN10G3769 Fragaria x ananassa HOM05D001384 ORTHO05D001215 1.6e-20 102.4 86 93.0
RcHm_v2.0_Chr1g0358781 Rosa chinensis HOM05D001384 ORTHO05D001215 5.2e-19 97.4 84 88.1
FAN03G0436 Fragaria x ananassa HOM05D001384 ORTHO05D001215 8.9e-19 96.7 84 91.7
Prupe.2G183500 Prunus persica HOM05D001384 ORTHO05D001215 8.6e-14 80.1 92 57.6
MD07G1144900 Malus domestica HOM05D001384 ORTHO05D001215 1.9e-13 79.0 97 66.0
MD01G1076000 Malus domestica HOM05D001384 ORTHO05D001215 1.2e-12 76.3 97 71.1
TAR375G0324 Trochodendron aralioides HOM05D001384 ORTHO05D001215 4.7e-12 74.3 37 100.0
Actinidia02805 Actinidia chinensis HOM05D001384 ORTHO05D001215 6.2e-12 73.9 37 97.3
ClCG05G001090 Citrullus lanatus HOM05D001384 ORTHO05D001215 6.2e-12 73.9 36 100.0
Sed0001168 Sechium edule HOM05D001384 ORTHO05D001215 6.2e-12 73.9 36 100.0
TAR636G2986 Trochodendron aralioides HOM05D001384 ORTHO05D001215 6.2e-12 73.9 74 70.3
Duzib133G0751 Durio zibethinus HOM05D001384 ORTHO05D001215 8.1e-12 73.6 74 60.8
Actinidia28493 Actinidia chinensis HOM05D001384 ORTHO05D001215 1.1e-11 73.2 37 97.3
Atru.chr5.621 Acer truncatum HOM05D001384 ORTHO05D001215 1.4e-11 72.8 76 60.5
CsaV3_3G008420 Cucumis sativus L. HOM05D001384 ORTHO05D001215 1.4e-11 72.8 36 97.2
Hma1.2p1_0384F.1_g141070 Hydrangea macrophylla HOM05D001384 ORTHO05D001215 1.4e-11 72.8 37 94.6
Actinidia20196 Actinidia chinensis HOM05D001384 ORTHO05D001215 1.8e-11 72.4 38 92.1
Duzib138G1328 Durio zibethinus HOM05D001384 ORTHO05D001215 1.8e-11 72.4 37 97.3
vmacro22519 Vaccinium macrocarpon HOM05D001384 ORTHO05D001215 1.8e-11 72.4 38 92.1
Cpa.g.sc194.9 Carica papaya HOM05D001384 ORTHO05D001215 2.3e-11 72.0 37 97.3
Gohir.A11G094700 Gossypium hirsutum HOM05D001384 ORTHO05D001215 2.3e-11 72.0 37 97.3
Gohir.D11G099700 Gossypium hirsutum HOM05D001384 ORTHO05D001215 2.3e-11 72.0 37 97.3
Gorai.007G105900 Gossypium raimondii HOM05D001384 ORTHO05D001215 2.3e-11 72.0 37 97.3
Gohir.A10G068700 Gossypium hirsutum HOM05D001384 ORTHO05D001215 3.1e-11 71.6 37 94.6
GSVIVG01027049001 Vitis vinifera HOM05D001384 ORTHO05D001215 4.0e-11 71.2 37 94.6
COL.COLO4_06332 Corchorus olitorius HOM05D001384 ORTHO05D001215 5.2e-11 70.9 74 58.1
Dinv32554 Davidia involucrata HOM05D001384 ORTHO05D001215 5.2e-11 70.9 37 97.3
Gohir.A12G110700 Gossypium hirsutum HOM05D001384 ORTHO05D001215 5.2e-11 70.9 37 94.6
Gohir.D12G114000 Gossypium hirsutum HOM05D001384 ORTHO05D001215 5.2e-11 70.9 37 94.6
Gorai.008G123500 Gossypium raimondii HOM05D001384 ORTHO05D001215 5.2e-11 70.9 37 94.6
PGSC0003DMG400000207 Solanum tuberosum HOM05D001384 ORTHO05D001215 5.2e-11 70.9 37 91.9
Potri.014G094800 Populus trichocarpa HOM05D001384 ORTHO05D001215 6.8e-11 70.5 81 64.2
Sabra02G0144100 Salix brachista HOM05D001384 ORTHO05D001215 6.8e-11 70.5 37 91.9
Thecc.01G347500 Theobroma cacao HOM05D001384 ORTHO05D001215 6.8e-11 70.5 74 58.1
TWI59G0487 Tripterygium wilfordii HOM05D001384 ORTHO05D001215 6.8e-11 70.5 37 91.9
Nitab4.5_0000305g0110 Nicotiana tabacum HOM05D001384 ORTHO05D001215 8.9e-11 70.1 37 91.9
Haze_15620 Corylus avellana HOM05D001384 ORTHO05D001215 1.2e-10 69.7 37 94.6
Dinv43894 Davidia involucrata HOM05D001384 ORTHO05D001215 1.2e-10 69.7 37 94.6
Gohir.A07G139600 Gossypium hirsutum HOM05D001384 ORTHO05D001215 1.2e-10 69.7 37 91.9
Gohir.D07G144700 Gossypium hirsutum HOM05D001384 ORTHO05D001215 1.2e-10 69.7 37 91.9
Gorai.001G156700 Gossypium raimondii HOM05D001384 ORTHO05D001215 1.2e-10 69.7 37 91.9
Rhsim01G0169300 Rhododendron simsii HOM05D001384 ORTHO05D001215 1.5e-10 69.3 37 94.6
Gohir.A10G199650 Gossypium hirsutum HOM05D001384 ORTHO05D001215 2.0e-10 68.9 73 56.2
QL04p059433 Quercus lobata HOM05D001384 ORTHO05D001215 2.0e-10 68.9 79 65.8
Rhsim07G0006800 Rhododendron simsii HOM05D001384 ORTHO05D001215 2.0e-10 68.9 38 89.5
CiPaw.01G072100 Carya illinoinensis HOM05D001384 ORTHO05D001215 2.6e-10 68.6 75 58.7
Manes.05G026100 Manihot esculenta HOM05D001384 ORTHO05D001215 2.6e-10 68.6 81 66.7
Solyc01g095515.1 Solanum lycopersicum HOM05D001384 ORTHO05D001215 2.6e-10 68.6 37 89.2
Sopen01g039270 Solanum pennellii HOM05D001384 ORTHO05D001215 2.6e-10 68.6 37 89.2
Nitab4.5_0009232g0020 Nicotiana tabacum HOM05D001384 ORTHO05D001215 3.4e-10 68.2 37 89.2
Sed0020989 Sechium edule HOM05D001384 ORTHO05D001215 3.4e-10 68.2 37 91.9
Nitab4.5_0008261g0010 Nicotiana tabacum HOM05D001384 ORTHO05D001215 4.4e-10 67.8 67 55.2
THA.LOC104817336 Tarenaya hassleriana HOM05D001384 ORTHO05D001215 4.4e-10 67.8 37 86.5
Aa31LG10G15620 Aethionema arabicum HOM05D001384 ORTHO05D001215 5.8e-10 67.4 38 92.1
Nitab4.5_0000522g0080 Nicotiana tabacum HOM05D001384 ORTHO05D001215 5.8e-10 67.4 67 55.2
FvH4_7g15910 Fragaria vesca HOM05D001384 ORTHO05D001215 7.5e-10 67.0 68 91.2
QL04p058637 Quercus lobata HOM05D001384 ORTHO05D001215 7.5e-10 67.0 35 91.4
CSS0003232 Camellia sinensis var. sinensis HOM05D001384 ORTHO05D001215 9.9e-10 66.6 38 92.1
CAN.G986.43 Capsicum annuum HOM05D001384 ORTHO05D001215 9.9e-10 66.6 37 89.2
Lalb_Chr04g0261751 Lupinus albus HOM05D001384 ORTHO05D001215 9.9e-10 66.6 35 94.3
MELO3C006062.2 Cucumis melo HOM05D001384 ORTHO05D001215 1.3e-09 66.2 36 91.7
Solyc10g011730.3 Solanum lycopersicum HOM05D001384 ORTHO05D001215 1.3e-09 66.2 72 51.4
Sopen10g005520 Solanum pennellii HOM05D001384 ORTHO05D001215 1.3e-09 66.2 72 51.4
Peaxi162Scf01012g00121 Petunia axillaris HOM05D001384 ORTHO05D001215 1.7e-09 65.9 37 83.8
AL4G45630 Arabidopsis lyrata HOM05D001384 ORTHO05D001215 2.2e-09 65.5 38 89.5
AT2G46330 Arabidopsis thaliana HOM05D001384 ORTHO05D001215 2.2e-09 65.5 38 89.5
BcaB01g03229 Brassica carinata HOM05D001384 ORTHO05D001215 2.2e-09 65.5 38 89.5
BcaC01g05082 Brassica carinata HOM05D001384 ORTHO05D001215 2.2e-09 65.5 38 89.5
A03p25570 Brassica napus HOM05D001384 ORTHO05D001215 2.2e-09 65.5 38 89.5
BraA03t11773Z Brassica rapa HOM05D001384 ORTHO05D001215 2.2e-09 65.5 38 89.5
Carub.0004s2903 Capsella rubella HOM05D001384 ORTHO05D001215 2.2e-09 65.5 38 89.5
CDE09G1367 Ceratophyllum demersum HOM05D001384 ORTHO05D001215 2.2e-09 65.5 38 84.2
Ciclev10023364m.g Citrus clementina HOM05D001384 ORTHO05D001215 2.2e-09 65.5 38 89.5
Thhalv10001752m.g Eutrema salsugineum HOM05D001384 ORTHO05D001215 2.2e-09 65.5 38 89.5
Peaxi162Scf00099g01816 Petunia axillaris HOM05D001384 ORTHO05D001215 2.9e-09 65.1 37 83.8
PGR031G3192 Punica granatum HOM05D001384 ORTHO05D001215 2.9e-09 65.1 37 89.2
Sp4g28370 Schrenkiella parvula HOM05D001384 ORTHO05D001215 2.9e-09 65.1 38 89.5
vmacro13148 Vaccinium macrocarpon HOM05D001384 ORTHO05D001215 2.9e-09 65.1 38 84.2
AT3G61640 Arabidopsis thaliana HOM05D001384 ORTHO05D001215 3.7e-09 64.7 39 87.2
MBI07_g20448_MAGBIO Magnolia biondii HOM05D001384 ORTHO05D001215 3.7e-09 64.7 37 86.5
C03p30500 Brassica napus HOM05D001384 ORTHO05D001215 4.9e-09 64.3 38 86.8
CDE02G0411 Ceratophyllum demersum HOM05D001384 ORTHO05D001215 4.9e-09 64.3 37 83.8
Gohir.A11G210500 Gossypium hirsutum HOM05D001384 ORTHO05D001215 4.9e-09 64.3 75 53.3
THA.LOC104802055 Tarenaya hassleriana HOM05D001384 ORTHO05D001215 4.9e-09 64.3 37 86.5
Aa31LG1G27700 Aethionema arabicum HOM05D001384 ORTHO05D001215 6.4e-09 63.9 38 86.8
BcaB01g03227 Brassica carinata HOM05D001384 ORTHO05D001215 6.4e-09 63.9 38 86.8
BcaC01g05077 Brassica carinata HOM05D001384 ORTHO05D001215 6.4e-09 63.9 38 86.8
Zm00001eb359480 Zea mays HOM05D001384 ORTHO05D001215 6.4e-09 63.9 32 96.9
Aqoxy5G04117 Aquilegia oxysepala HOM05D001384 ORTHO05D001215 8.3e-09 63.5 38 89.5
Glyma.03G255700 Glycine max HOM05D001384 ORTHO05D001215 8.3e-09 63.5 73 50.7
HPP92_026774 Vanilla planifolia HOM05D001384 ORTHO05D001215 8.3e-09 63.5 38 86.8
arahy.Tifrunner.gnm1.ann1.1BHK1H Arachis hypogaea HOM05D001384 ORTHO05D001215 1.1e-08 63.2 34 91.2
arahy.Tifrunner.gnm1.ann1.246EX0 Arachis hypogaea HOM05D001384 ORTHO05D001215 1.1e-08 63.2 34 88.2
arahy.Tifrunner.gnm1.ann1.57RBBI Arachis hypogaea HOM05D001384 ORTHO05D001215 1.1e-08 63.2 34 88.2
Manes.01G249100 Manihot esculenta HOM05D001384 ORTHO05D001215 1.1e-08 63.2 37 91.9
Sp5g01770 Schrenkiella parvula HOM05D001384 ORTHO05D001215 1.1e-08 63.2 33 90.9
PGSC0003DMG400019380 Solanum tuberosum HOM05D001384 ORTHO05D001215 1.1e-08 63.2 70 50.0
Os02g0264800 Oryza sativa ssp. japonica HOM05D001384 ORTHO05D001215 1.4e-08 62.8 39 84.6
Os05g0217000 Oryza sativa ssp. japonica HOM05D001384 ORTHO05D001215 1.4e-08 62.8 38 84.2
BcaB01g03224 Brassica carinata HOM05D001384 ORTHO05D001215 1.9e-08 62.4 38 86.8
BcaC02g12698 Brassica carinata HOM05D001384 ORTHO05D001215 1.9e-08 62.4 38 86.8
BcaC02g12816 Brassica carinata HOM05D001384 ORTHO05D001215 1.9e-08 62.4 38 86.8
A04p00990 Brassica napus HOM05D001384 ORTHO05D001215 1.9e-08 62.4 33 87.9
A05p01460 Brassica napus HOM05D001384 ORTHO05D001215 1.9e-08 62.4 38 86.8
C04p01650 Brassica napus HOM05D001384 ORTHO05D001215 1.9e-08 62.4 38 86.8
C04p31180 Brassica napus HOM05D001384 ORTHO05D001215 1.9e-08 62.4 33 87.9
BolC4t21817H Brassica oleracea HOM05D001384 ORTHO05D001215 1.9e-08 62.4 38 86.8
BolC4t24669H Brassica oleracea HOM05D001384 ORTHO05D001215 1.9e-08 62.4 33 87.9
BraA04t15816Z Brassica rapa HOM05D001384 ORTHO05D001215 1.9e-08 62.4 33 87.9
BraA05t19143Z Brassica rapa HOM05D001384 ORTHO05D001215 1.9e-08 62.4 38 86.8
CSS0021424 Camellia sinensis var. sinensis HOM05D001384 ORTHO05D001215 1.9e-08 62.4 37 86.5
CARHR141610 Cardamine hirsuta HOM05D001384 ORTHO05D001215 1.9e-08 62.4 38 86.8
DCAR_006964 Daucus carota HOM05D001384 ORTHO05D001215 1.9e-08 62.4 37 83.8
SMO143G0078 Selaginella moellendorffii HOM05D001384 ORTHO05D001215 1.9e-08 62.4 36 83.3
arahy.Tifrunner.gnm1.ann1.JZQU6N Arachis hypogaea HOM05D001384 ORTHO05D001215 2.4e-08 62.0 33 90.9
arahy.Tifrunner.gnm1.ann1.XBFI6K Arachis hypogaea HOM05D001384 ORTHO05D001215 2.4e-08 62.0 33 90.9
Zm00001eb237880 Zea mays HOM05D001384 ORTHO05D001215 2.4e-08 62.0 38 86.8
BcaB02g08150 Brassica carinata HOM05D001384 ORTHO05D001215 3.2e-08 61.6 35 85.7
CANSAT56G0949 Cannabis sativa HOM05D001384 ORTHO05D001215 3.2e-08 61.6 35 88.6
HanXRQChr04g0121001 Helianthus annuus HOM05D001384 ORTHO05D001215 3.2e-08 61.6 37 78.4
Os01g0657000 Oryza sativa ssp. japonica HOM05D001384 ORTHO05D001215 3.2e-08 61.6 38 84.2
AL5G44040 Arabidopsis lyrata HOM05D001384 ORTHO05D001215 5.4e-08 60.8 33 87.9
Carub.0005s2833 Capsella rubella HOM05D001384 ORTHO05D001215 5.4e-08 60.8 32 90.6
CDE08G0321 Ceratophyllum demersum HOM05D001384 ORTHO05D001215 5.4e-08 60.8 38 84.2
Zm00001eb350580 Zea mays HOM05D001384 ORTHO05D001215 5.4e-08 60.8 38 81.6
Os06g0505700 Oryza sativa ssp. japonica HOM05D001384 ORTHO05D001215 7.1e-08 60.5 38 84.2
BcaC02g10241 Brassica carinata HOM05D001384 ORTHO05D001215 9.2e-08 60.1 33 84.8
CDE02G4026 Ceratophyllum demersum HOM05D001384 ORTHO05D001215 1.2e-07 59.7 38 81.6
unitig_62.g23800 Utricularia gibba HOM05D001384 ORTHO05D001215 1.2e-07 59.7 38 73.7
Zm00001eb203920 Zea mays HOM05D001384 ORTHO05D001215 2.1e-07 58.9 39 79.5
MBI06_g32761_MAGBIO Magnolia biondii HOM05D001384 ORTHO05D001215 2.7e-07 58.5 38 81.6
PGR042G2194 Punica granatum HOM05D001384 ORTHO05D001215 2.7e-07 58.5 32 90.6
AagrBONN_evm.TU.Sc2ySwM_117.409 Anthoceros agrestis HOM05D001384 ORTHO05D001215 6.0e-07 57.4 37 70.3
SEGI_03889 Sequoiadendron giganteum HOM05D001384 ORTHO05D001215 6.0e-07 57.4 81 48.1
SEGI_03997 Sequoiadendron giganteum HOM05D001384 ORTHO05D001215 6.0e-07 57.4 81 48.1
QL02p057492 Quercus lobata HOM05D001384 ORTHO05D001215 1.3e-06 56.2 32 87.5
GSVIVG01028741001 Vitis vinifera HOM05D001384 ORTHO05D001215 1.3e-06 56.2 30 93.3
Lj1g0002747 Lotus japonicus HOM05D001384 ORTHO05D001215 1.7e-06 55.8 71 47.9
Potri.001G094700 Populus trichocarpa HOM05D001384 ORTHO05D001215 1.7e-06 55.8 31 90.3
unitig_736.g22817 Utricularia gibba HOM05D001384 ORTHO05D001215 1.7e-06 55.8 38 71.1
Actinidia27339 Actinidia chinensis HOM05D001384 ORTHO05D001215 2.3e-06 55.5 66 54.5
CDE03G0448 Ceratophyllum demersum HOM05D001384 ORTHO05D001215 2.3e-06 55.5 33 81.8
Phvul.006G110400 Phaseolus vulgaris HOM05D001384 ORTHO05D001215 3.0e-06 55.1 66 51.5
unitig_899.g14812 Utricularia gibba HOM05D001384 ORTHO05D001215 3.0e-06 55.1 38 73.7
Lsat_1_v5_gn_7_1901 Lactuca sativa HOM05D001384 ORTHO05D001215 3.9e-06 54.7 30 86.7
Duzib068G0580 Durio zibethinus HOM05D001384 ORTHO05D001215 5.1e-06 54.3 29 93.1
Duzib084G1120 Durio zibethinus HOM05D001384 ORTHO05D001215 5.1e-06 54.3 29 93.1
ECA236G1259 Erigeron canadensis HOM05D001384 ORTHO05D001215 5.1e-06 54.3 81 54.3
Gohir.A12G234600 Gossypium hirsutum HOM05D001384 ORTHO05D001215 5.1e-06 54.3 29 93.1
Gorai.008G252400 Gossypium raimondii HOM05D001384 ORTHO05D001215 5.1e-06 54.3 29 93.1
Thecc.03G292300 Theobroma cacao HOM05D001384 ORTHO05D001215 5.1e-06 54.3 29 93.1
ClCG01G002070 Citrullus lanatus HOM05D001384 ORTHO05D001215 6.6e-06 53.9 31 83.9
QL02p031550 Quercus lobata HOM05D001384 ORTHO05D001215 6.6e-06 53.9 31 87.1
TWI15G0052 Tripterygium wilfordii HOM05D001384 ORTHO05D001215 6.6e-06 53.9 29 89.7
COL.COLO4_21727 Corchorus olitorius HOM05D001384 ORTHO05D001215 8.6e-06 53.5 29 89.7
Potri.003G136600 Populus trichocarpa HOM05D001384 ORTHO05D001215 8.6e-06 53.5 31 83.9


User provided reference genes

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