Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN06G2548 Fragaria x ananassa HOM05D006988 ORTHO05D008731 2.2e-160 568.9 287 100.0
FvH4_7g10720 Fragaria vesca HOM05D006988 ORTHO05D008731 9.2e-111 404.1 214 96.7
FAN06G3033 Fragaria x ananassa HOM05D006988 ORTHO05D008731 9.2e-111 404.1 214 99.5
FAN01G2452 Fragaria x ananassa HOM05D006988 ORTHO05D008731 3.5e-110 402.1 240 87.1
FAN03G1007 Fragaria x ananassa HOM05D006988 ORTHO05D008731 4.0e-106 388.7 214 92.1
Prupe.2G135300 Prunus persica HOM05D006988 ORTHO05D008731 9.9e-89 330.9 214 78.0
MD07G1111900 Malus domestica HOM05D006988 ORTHO05D008731 7.1e-87 324.7 214 77.1
Haze_02728 Corylus avellana HOM05D006988 ORTHO05D008731 6.7e-85 318.2 216 74.5
RcHm_v2.0_Chr1g0348671 Rosa chinensis HOM05D006988 ORTHO05D008731 6.7e-85 318.2 182 89.0
Manes.01G270400 Manihot esculenta HOM05D006988 ORTHO05D008731 2.5e-84 316.2 214 73.8
Duzib133G0505 Durio zibethinus HOM05D006988 ORTHO05D008731 4.3e-84 315.5 222 71.2
Atru.chr5.214 Acer truncatum HOM05D006988 ORTHO05D008731 2.1e-83 313.2 192 80.7
Potri.014G058400 Populus trichocarpa HOM05D006988 ORTHO05D008731 2.1e-83 313.2 222 72.5
Sabra14G0042600 Salix brachista HOM05D006988 ORTHO05D008731 1.8e-82 310.1 222 72.5
Gorai.001G175700 Gossypium raimondii HOM05D006988 ORTHO05D008731 4.0e-82 308.9 188 80.9
Thecc.01G386200 Theobroma cacao HOM05D006988 ORTHO05D008731 4.0e-82 308.9 188 80.9
Gohir.D07G153600 Gossypium hirsutum HOM05D006988 ORTHO05D008731 6.9e-82 308.1 188 80.9
Phvul.008G157000 Phaseolus vulgaris HOM05D006988 ORTHO05D008731 1.5e-81 307.0 188 79.3
QL04p035766 Quercus lobata HOM05D006988 ORTHO05D008731 2.0e-81 306.6 219 74.4
Gohir.A07G147500 Gossypium hirsutum HOM05D006988 ORTHO05D008731 3.4e-81 305.8 188 81.4
VMungo1383G3408 Vigna mungo HOM05D006988 ORTHO05D008731 5.8e-81 305.1 188 79.3
arahy.Tifrunner.gnm1.ann1.EWF75K Arachis hypogaea HOM05D006988 ORTHO05D008731 7.6e-81 304.7 218 70.6
arahy.Tifrunner.gnm1.ann1.I2GGUW Arachis hypogaea HOM05D006988 ORTHO05D008731 7.6e-81 304.7 218 70.6
Ca_27093_v3 Cicer arietinum L. HOM05D006988 ORTHO05D008731 1.7e-80 303.5 188 79.8
CiPaw.13G030900 Carya illinoinensis HOM05D006988 ORTHO05D008731 2.2e-80 303.1 189 77.2
Glyma.01G076100 Glycine max HOM05D006988 ORTHO05D008731 4.9e-80 302.0 187 78.1
MELO3C021141.2 Cucumis melo HOM05D006988 ORTHO05D008731 1.1e-79 300.8 214 69.6
Solyc10g018590.2 Solanum lycopersicum HOM05D006988 ORTHO05D008731 1.1e-79 300.8 217 72.4
CsaV3_6G009120 Cucumis sativus L. HOM05D006988 ORTHO05D008731 1.4e-79 300.4 214 70.1
Lj1g0025695 Lotus japonicus HOM05D006988 ORTHO05D008731 1.9e-79 300.1 188 78.2
Sed0016586 Sechium edule HOM05D006988 ORTHO05D008731 1.9e-79 300.1 214 71.0
COL.COLO4_12466 Corchorus olitorius HOM05D006988 ORTHO05D008731 2.5e-79 299.7 187 78.1
Glyma.11G164037 Glycine max HOM05D006988 ORTHO05D008731 4.2e-79 298.9 214 70.1
Sopen10g008330 Solanum pennellii HOM05D006988 ORTHO05D008731 4.2e-79 298.9 216 70.8
CSS0001978 Camellia sinensis var. sinensis HOM05D006988 ORTHO05D008731 9.3e-79 297.7 222 71.2
ClCG06G003000 Citrullus lanatus HOM05D006988 ORTHO05D008731 1.2e-78 297.4 214 68.7
CSS0011747 Camellia sinensis var. sinensis HOM05D006988 ORTHO05D008731 1.6e-78 297.0 191 77.0
TAR636G1375 Trochodendron aralioides HOM05D006988 ORTHO05D008731 1.6e-78 297.0 191 73.8
Nn6g33931 Nelumbo nucifera HOM05D006988 ORTHO05D008731 4.6e-78 295.4 185 76.8
THA.LOC104814078 Tarenaya hassleriana HOM05D006988 ORTHO05D008731 7.9e-78 294.7 185 74.6
Peaxi162Scf00350g00014 Petunia axillaris HOM05D006988 ORTHO05D008731 2.3e-77 293.1 224 67.0
PGSC0003DMG400011763 Solanum tuberosum HOM05D006988 ORTHO05D008731 3.9e-77 292.4 217 70.0
CANSAT01G0747 Cannabis sativa HOM05D006988 ORTHO05D008731 8.7e-77 291.2 210 71.0
Migut.B01575 Erythranthe guttata HOM05D006988 ORTHO05D008731 8.7e-77 291.2 194 72.7
CARHR248070 Cardamine hirsuta HOM05D006988 ORTHO05D008731 1.5e-76 290.4 191 71.2
MBI04_g09512_MAGBIO Magnolia biondii HOM05D006988 ORTHO05D008731 3.3e-76 289.3 217 67.7
Dinv43657 Davidia involucrata HOM05D006988 ORTHO05D008731 1.3e-75 287.3 225 67.1
Nitab4.5_0000882g0050 Nicotiana tabacum HOM05D006988 ORTHO05D008731 1.3e-75 287.3 233 66.1
Rhsim07G0032500 Rhododendron simsii HOM05D006988 ORTHO05D008731 3.7e-75 285.8 188 75.5
Medtr7g444820 Medicago truncatula HOM05D006988 ORTHO05D008731 1.1e-74 284.3 185 75.7
SalBow5G4855 Salvia bowleyana HOM05D006988 ORTHO05D008731 1.1e-74 284.3 218 67.0
CAN.G160.69 Capsicum annuum HOM05D006988 ORTHO05D008731 3.1e-74 282.7 188 73.9
Cc02_g24580 Coffea canephora HOM05D006988 ORTHO05D008731 5.3e-74 282.0 192 72.4
AUR62013709 Chenopodium quinoa HOM05D006988 ORTHO05D008731 3.4e-73 279.3 184 75.5
Aqoxy7G00790 Aquilegia oxysepala HOM05D006988 ORTHO05D008731 5.8e-73 278.5 202 67.3
AUR62004148 Chenopodium quinoa HOM05D006988 ORTHO05D008731 5.8e-73 278.5 225 67.1
Lj9A563T51 Lonicera japonica HOM05D006988 ORTHO05D008731 5.8e-73 278.5 214 66.8
Sp6g00080 Schrenkiella parvula HOM05D006988 ORTHO05D008731 1.0e-72 277.7 191 70.7
Nitab4.5_0001501g0030 Nicotiana tabacum HOM05D006988 ORTHO05D008731 2.2e-72 276.6 203 70.0
Carub.0006s3719 Capsella rubella HOM05D006988 ORTHO05D008731 3.8e-72 275.8 190 66.8
DCAR_031865 Daucus carota HOM05D006988 ORTHO05D008731 3.8e-72 275.8 218 64.7
AT4G00030 Arabidopsis thaliana HOM05D006988 ORTHO05D008731 8.4e-72 274.6 187 67.4
Hund17063 Selenicereus undatus HOM05D006988 ORTHO05D008731 8.4e-72 274.6 191 71.7
Hma1.2p1_0341F.1_g130300 Hydrangea macrophylla HOM05D006988 ORTHO05D008731 1.1e-71 274.2 187 72.2
EL10Ac1g00818 Beta vulgaris HOM05D006988 ORTHO05D008731 1.4e-71 273.9 181 75.1
SGA_v2.0_scaffold153G36954 Striga asiatica HOM05D006988 ORTHO05D008731 1.9e-71 273.5 222 64.0
AL6G53480 Arabidopsis lyrata HOM05D006988 ORTHO05D008731 3.2e-71 272.7 188 67.0
PSO170G6265 Papaver somniferum HOM05D006988 ORTHO05D008731 4.2e-71 272.3 181 74.0
Lsat_1_v5_gn_7_10320 Lactuca sativa HOM05D006988 ORTHO05D008731 9.3e-71 271.2 187 71.1
BcaB01g02207 Brassica carinata HOM05D006988 ORTHO05D008731 2.1e-70 270.0 191 68.1
C09p00070 Brassica napus HOM05D006988 ORTHO05D008731 2.7e-70 269.6 185 70.3
BraA09t35681Z Brassica rapa HOM05D006988 ORTHO05D008731 2.7e-70 269.6 185 70.3
BcaC04g24207 Brassica carinata HOM05D006988 ORTHO05D008731 1.8e-69 266.9 175 72.0
BolC9t52942H Brassica oleracea HOM05D006988 ORTHO05D008731 1.8e-69 266.9 175 72.0
ATR0317G076 Amborella trichopoda HOM05D006988 ORTHO05D008731 3.9e-69 265.8 188 68.1
Aa31LG5G100 Aethionema arabicum HOM05D006988 ORTHO05D008731 2.5e-68 263.1 207 61.8
COL.COLO4_37993 Corchorus olitorius HOM05D006988 ORTHO05D008731 1.6e-67 260.4 194 68.6
SEGI_39512 Sequoiadendron giganteum HOM05D006988 ORTHO05D008731 2.2e-67 260.0 216 59.3
ECA236G3211 Erigeron canadensis HOM05D006988 ORTHO05D008731 6.3e-67 258.5 190 66.8
HanXRQChr06g0168881 Helianthus annuus HOM05D006988 ORTHO05D008731 2.4e-66 256.5 175 72.0
TWI59G0585 Tripterygium wilfordii HOM05D006988 ORTHO05D008731 3.1e-66 256.1 214 65.4
TPR.G39083 Trifolium pratense HOM05D006988 ORTHO05D008731 2.9e-64 249.6 144 82.6
Ciclev10022767m.g Citrus clementina HOM05D006988 ORTHO05D008731 1.1e-63 247.7 141 83.0
Eucgr.D02502 Eucalyptus grandis HOM05D006988 ORTHO05D008731 1.2e-62 244.2 159 76.7
GSVIVG01018209001 Vitis vinifera HOM05D006988 ORTHO05D008731 7.9e-62 241.5 141 80.1
Zm00001eb257570 Zea mays HOM05D006988 ORTHO05D008731 1.8e-61 240.4 173 68.2
Os04g0551700 Oryza sativa ssp. japonica HOM05D006988 ORTHO05D008731 8.8e-61 238.0 173 67.1
Pp3c14_7270 Physcomitrium patens HOM05D006988 ORTHO05D008731 5.3e-58 228.8 190 61.1
Cpa.g.sc620.2 Carica papaya HOM05D006988 ORTHO05D008731 1.5e-57 227.3 185 64.3
Ah.16g110010 Amaranthus hybridus HOM05D006988 ORTHO05D008731 6.5e-56 221.9 151 72.8
Mapoly0004s0296 Marchantia polymorpha HOM05D006988 ORTHO05D008731 1.4e-55 220.7 170 62.4
Sc23g0003890 Simmondsia chinensis HOM05D006988 ORTHO05D008731 3.2e-55 219.5 164 65.9
MSTRG.20719 Avicennia marina HOM05D006988 ORTHO05D008731 1.6e-54 217.2 181 61.9
SMO367G0814 Selaginella moellendorffii HOM05D006988 ORTHO05D008731 2.1e-54 216.9 173 59.0
SMO367G0459 Selaginella moellendorffii HOM05D006988 ORTHO05D008731 1.0e-53 214.5 173 58.4
Psat3g157120 Pisum sativum HOM05D006988 ORTHO05D008731 3.5e-49 199.5 135 74.8
Thhalv10028565m.g Eutrema salsugineum HOM05D000447 ORTHO05D000315 1.1e-44 184.5 133 69.2
vmacro13459 Vaccinium macrocarpon HOM05D006988 ORTHO05D008731 8.2e-43 178.3 166 60.2
SMO367G0117 Selaginella moellendorffii HOM05D012767 ORTHO05D008731 8.8e-37 158.3 160 51.2
C03p91270 Brassica napus HOM05D006988 ORTHO05D008731 1.7e-35 154.1 123 62.6
Cre14.g618050 Chlamydomonas reinhardtii HOM05D006988 ORTHO05D008731 8.3e-35 151.8 201 44.8
BcaC03g13893 Brassica carinata HOM05D006988 ORTHO05D008731 1.8e-34 150.6 201 44.8
AagrBONN_evm.TU.Sc2ySwM_362.1347 Anthoceros agrestis HOM05D006988 ORTHO05D008731 9.1e-34 148.3 135 54.8
PRCOL_00005443 Prasinoderma coloniale HOM05D006988 ORTHO05D008731 2.7e-33 146.7 230 40.0
C02p10970 Brassica napus HOM05D006988 ORTHO05D008731 1.5e-31 141.0 85 72.9
BolC2t07167H Brassica oleracea HOM05D006988 ORTHO05D008731 4.2e-31 139.4 85 71.8
BcaC01g03084 Brassica carinata HOM05D006988 ORTHO05D008731 7.7e-25 118.6 168 40.5
MCO12G266 Micromonas commoda HOM05D006988 ORTHO05D008731 1.1e-23 114.8 177 41.2
Lalb_Chr19g0127481 Lupinus albus HOM05D006988 ORTHO05D008731 2.3e-21 107.1 55 85.5
Dinv19490 Davidia involucrata HOM05D006985 ORTHO05D008749 2.6e-20 103.6 93 60.2
unitig_26.g9723 Utricularia gibba HOM05D000502 ORTHO05D000356 9.8e-20 101.7 83 62.7
A09p00790 Brassica napus HOM05D006988 ORTHO05D008731 7.0e-18 95.5 103 52.4
Actinidia12175 Actinidia chinensis HOM05D006988 ORTHO05D008731 8.6e-16 88.6 82 54.9
FvH4_7g10730 Fragaria vesca HOM05D000143 ORTHO05D000072 1.5e-12 77.8 33 100.0
BolC3t17906H Brassica oleracea HOM05D001199 ORTHO05D001013 2.0e-12 77.4 62 58.1
C03p56160 Brassica napus HOM05D001199 ORTHO05D001013 7.5e-12 75.5 64 57.8
RcHm_v2.0_Chr1g0348661 Rosa chinensis HOM05D006988 ORTHO05D008731 8.3e-11 72.0 33 100.0
Lalb_Chr19g0127491 Lupinus albus HOM05D006988 ORTHO05D008731 1.9e-10 70.9 57 63.2
Dinv13821 Davidia involucrata HOM05D006988 ORTHO05D008731 2.7e-09 67.0 70 54.3
Actinidia22773 Actinidia chinensis HOM05D006988 ORTHO05D008731 1.7e-08 64.3 34 85.3
Haze_25195 Corylus avellana HOM05D005663 ORTHO05D007258 8.0e-06 55.5 139 30.2


User provided reference genes

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