Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN06G2530 Fragaria x ananassa HOM05D022825 ORTHO05D001282 3.6e-69 265.0 155 100.0
FAN06G0722 Fragaria x ananassa HOM05D001463 ORTHO05D001282 1.7e-66 256.1 154 93.5
FvH4_7g23590 Fragaria vesca HOM05D001463 ORTHO05D001282 2.5e-62 242.3 153 91.5
FAN03G1607 Fragaria x ananassa HOM05D022825 ORTHO05D001282 9.2e-57 223.8 150 90.7
FAN10G4334 Fragaria x ananassa HOM05D022825 ORTHO05D001282 9.6e-46 187.2 125 90.4
FAN01G2241 Fragaria x ananassa HOM05D022825 ORTHO05D001282 2.0e-43 179.5 127 88.2
RcHm_v2.0_Chr1g0368821 Rosa chinensis HOM05D022825 ORTHO05D001282 4.6e-40 168.3 151 73.5
MD07G1207300 Malus domestica HOM05D001463 ORTHO05D001282 2.8e-21 105.9 166 49.4
MD01G1141700 Malus domestica HOM05D001463 ORTHO05D001282 2.2e-18 96.3 161 49.7
CiPaw.02G188100 Carya illinoinensis HOM05D001463 ORTHO05D001282 2.5e-17 92.8 179 40.8
QL08p062024 Quercus lobata HOM05D001463 ORTHO05D001282 3.5e-16 89.0 168 40.5
Potri.008G061700 Populus trichocarpa HOM05D001463 ORTHO05D001282 4.6e-16 88.6 172 40.1
Sabra08G0045300 Salix brachista HOM05D001463 ORTHO05D001282 6.1e-16 88.2 172 39.5
CiPaw.01G293300 Carya illinoinensis HOM05D001463 ORTHO05D001282 7.9e-16 87.8 170 41.8
Haze_17151 Corylus avellana HOM05D001463 ORTHO05D001282 1.0e-15 87.4 172 40.7
Lalb_Chr18g0052921 Lupinus albus HOM05D001463 ORTHO05D001282 1.0e-15 87.4 168 44.0
Sed0003709 Sechium edule HOM05D001463 ORTHO05D001282 5.1e-15 85.1 167 40.1
Cpa.g.sc19.255 Carica papaya HOM05D001463 ORTHO05D001282 1.1e-14 84.0 162 44.4
Glyma.02G252500 Glycine max HOM05D001463 ORTHO05D001282 1.9e-14 83.2 163 41.7
Hma1.2p1_0026F.1_g016620 Hydrangea macrophylla HOM05D001463 ORTHO05D001282 5.7e-14 81.6 155 41.9
Sabra10G0151000 Salix brachista HOM05D001463 ORTHO05D001282 1.3e-13 80.5 151 40.4
ClCG07G003740 Citrullus lanatus HOM05D001463 ORTHO05D001282 4.8e-13 78.6 167 39.5
Lj6g0014007 Lotus japonicus HOM05D001463 ORTHO05D001282 4.8e-13 78.6 141 44.0
Rhsim03G0137600 Rhododendron simsii HOM05D001463 ORTHO05D001282 6.3e-13 78.2 139 43.9
A05p06550 Brassica napus HOM05D001463 ORTHO05D001282 8.2e-13 77.8 168 41.1
Potri.010G196400 Populus trichocarpa HOM05D001463 ORTHO05D001282 8.2e-13 77.8 146 38.4
Phvul.001G238300 Phaseolus vulgaris HOM05D001463 ORTHO05D001282 1.1e-12 77.4 168 38.1
Atru.chr12.267 Acer truncatum HOM05D001463 ORTHO05D001282 1.8e-12 76.6 138 40.6
Manes.07G122500 Manihot esculenta HOM05D001463 ORTHO05D001282 1.8e-12 76.6 145 40.0
VMungo1383G2188 Vigna mungo HOM05D001463 ORTHO05D001282 1.8e-12 76.6 141 39.7
C04p67640 Brassica napus HOM05D001463 ORTHO05D001282 2.4e-12 76.3 166 39.8
BolC4t28263H Brassica oleracea HOM05D001463 ORTHO05D001282 2.4e-12 76.3 166 39.8
MELO3C026564.2 Cucumis melo HOM05D001463 ORTHO05D001282 3.1e-12 75.9 146 38.4
C04p07650 Brassica napus HOM05D001463 ORTHO05D001282 4.1e-12 75.5 139 45.3
THA.LOC104810063 Tarenaya hassleriana HOM05D001463 ORTHO05D001282 5.3e-12 75.1 141 44.0
TWI15G0258 Tripterygium wilfordii HOM05D001463 ORTHO05D001282 6.9e-12 74.7 135 45.2
Eucgr.J00967 Eucalyptus grandis HOM05D001463 ORTHO05D001282 9.0e-12 74.3 188 32.4
A04p04330 Brassica napus HOM05D001463 ORTHO05D001282 2.6e-11 72.8 138 38.4
C04p36660 Brassica napus HOM05D001463 ORTHO05D001282 2.6e-11 72.8 136 38.2
BolC4t25129H Brassica oleracea HOM05D001463 ORTHO05D001282 2.6e-11 72.8 136 38.2
BraA04t16144Z Brassica rapa HOM05D001463 ORTHO05D001282 2.6e-11 72.8 138 38.4
BraA05t19624Z Brassica rapa HOM05D001463 ORTHO05D001282 2.6e-11 72.8 147 42.2
CsaV3_5G008550 Cucumis sativus L. HOM05D001463 ORTHO05D001282 2.6e-11 72.8 146 37.7
BolC4t22381H Brassica oleracea HOM05D001463 ORTHO05D001282 3.4e-11 72.4 147 42.9
BcaC02g12118 Brassica carinata HOM05D001463 ORTHO05D001282 4.5e-11 72.0 139 43.2
BcaB02g09078 Brassica carinata HOM05D001463 ORTHO05D001282 5.9e-11 71.6 137 43.8
BcaC02g09782 Brassica carinata HOM05D001463 ORTHO05D001282 5.9e-11 71.6 136 38.2
Dinv34453 Davidia involucrata HOM05D001463 ORTHO05D001282 5.9e-11 71.6 179 39.1
Glyma.14G064100 Glycine max HOM05D001463 ORTHO05D001282 5.9e-11 71.6 169 41.4
LjContig00141g0012501 Lotus japonicus HOM05D001463 ORTHO05D001282 5.9e-11 71.6 171 39.8
AL4G37420 Arabidopsis lyrata HOM05D001463 ORTHO05D001282 7.7e-11 71.2 164 35.4
Dinv16275 Davidia involucrata HOM05D001463 ORTHO05D001282 1.0e-10 70.9 183 36.6
COL.COLO4_25564 Corchorus olitorius HOM05D001463 ORTHO05D001282 2.2e-10 69.7 102 43.1
LjContig00141g0025360 Lotus japonicus HOM05D001463 ORTHO05D001282 5.0e-10 68.6 170 39.4
BcaB02g08404 Brassica carinata HOM05D001463 ORTHO05D001282 6.5e-10 68.2 135 37.8
Cc02_g07230 Coffea canephora HOM05D001463 ORTHO05D001282 6.5e-10 68.2 144 38.2
HanXRQChr07g0202061 Helianthus annuus HOM05D001463 ORTHO05D001282 8.5e-10 67.8 175 36.6
TAR623G0111 Trochodendron aralioides HOM05D001463 ORTHO05D001282 8.5e-10 67.8 175 36.0
vmacro07015 Vaccinium macrocarpon HOM05D001463 ORTHO05D001282 8.5e-10 67.8 124 42.7
Glyma.18G033302 Glycine max HOM05D001463 ORTHO05D001282 1.1e-09 67.4 147 38.8
Gohir.D05G092800 Gossypium hirsutum HOM05D001463 ORTHO05D001282 1.1e-09 67.4 132 37.9
Gohir.D10G238356 Gossypium hirsutum HOM05D001463 ORTHO05D001282 1.1e-09 67.4 157 37.6
DCAR_024854 Daucus carota HOM05D001463 ORTHO05D001282 1.9e-09 66.6 155 36.8
MSTRG.8288 Avicennia marina HOM05D001463 ORTHO05D001282 2.5e-09 66.2 170 35.9
Gohir.A05G302600 Gossypium hirsutum HOM05D001463 ORTHO05D001282 2.5e-09 66.2 181 33.7
Thhalv10017636m.g Eutrema salsugineum HOM05D001463 ORTHO05D001282 4.2e-09 65.5 97 49.5
Gorai.009G095400 Gossypium raimondii HOM05D001463 ORTHO05D001282 4.2e-09 65.5 127 39.4
Gorai.011G273400 Gossypium raimondii HOM05D001463 ORTHO05D001282 4.2e-09 65.5 156 37.2
Psat2g037000 Pisum sativum HOM05D001463 ORTHO05D001282 4.2e-09 65.5 162 37.7
Prupe.2G242500 Prunus persica HOM05D001463 ORTHO05D001282 4.2e-09 65.5 137 47.4
Solyc05g052890.3 Solanum lycopersicum HOM05D001463 ORTHO05D001282 4.2e-09 65.5 141 37.6
Gohir.A05G092000 Gossypium hirsutum HOM05D001463 ORTHO05D001282 7.2e-09 64.7 127 37.8
Peaxi162Scf00140g01313 Petunia axillaris HOM05D001463 ORTHO05D001282 9.4e-09 64.3 179 35.2
Sopen05g031400 Solanum pennellii HOM05D001463 ORTHO05D001282 9.4e-09 64.3 141 37.6
Thecc.10G031300 Theobroma cacao HOM05D001463 ORTHO05D001282 9.4e-09 64.3 155 39.4
Actinidia02381 Actinidia chinensis HOM05D001463 ORTHO05D001282 1.2e-08 63.9 136 37.5
HanXRQChr07g0202081 Helianthus annuus HOM05D001463 ORTHO05D001282 1.2e-08 63.9 146 38.4
DCAR_011755 Daucus carota HOM05D001463 ORTHO05D001282 1.6e-08 63.5 147 36.7
Carub.0004s2198 Capsella rubella HOM05D001463 ORTHO05D001282 2.1e-08 63.2 121 41.3
Ca_05913_v3 Cicer arietinum L. HOM05D001463 ORTHO05D001282 2.1e-08 63.2 170 34.7
Lalb_Chr10g0104861 Lupinus albus HOM05D001463 ORTHO05D001282 2.1e-08 63.2 142 38.7
Medtr5g081360 Medicago truncatula HOM05D001463 ORTHO05D001282 2.1e-08 63.2 168 35.7
PGSC0003DMG400027191 Solanum tuberosum HOM05D001463 ORTHO05D001282 2.1e-08 63.2 168 34.5
THA.LOC104814892 Tarenaya hassleriana HOM05D001463 ORTHO05D001282 2.1e-08 63.2 120 33.3
A06p20670 Brassica napus HOM05D001463 ORTHO05D001282 3.6e-08 62.4 123 38.2
PGR044G2554 Punica granatum HOM05D001463 ORTHO05D001282 3.6e-08 62.4 131 37.4
Medtr3g069570 Medicago truncatula HOM05D001463 ORTHO05D001282 4.6e-08 62.0 164 36.6
THA.LOC104810744 Tarenaya hassleriana HOM05D001463 ORTHO05D001282 4.6e-08 62.0 111 36.9
Gohir.A10G225400 Gossypium hirsutum HOM05D001463 ORTHO05D001282 6.1e-08 61.6 159 34.6
Thecc.09G312500 Theobroma cacao HOM05D001463 ORTHO05D001282 6.1e-08 61.6 149 35.6
GSVIVG01016436001 Vitis vinifera HOM05D001463 ORTHO05D001282 7.9e-08 61.2 179 38.5
Sp4g22150 Schrenkiella parvula HOM05D001463 ORTHO05D001282 1.0e-07 60.8 139 39.6
AL8G35630 Arabidopsis lyrata HOM05D001463 ORTHO05D001282 1.4e-07 60.5 122 37.7
CARHR207250 Cardamine hirsuta HOM05D012265 ORTHO05D014407 1.4e-07 60.5 150 34.7
Manes.10G021200 Manihot esculenta HOM05D001463 ORTHO05D001282 1.4e-07 60.5 150 38.0
Hund16038 Selenicereus undatus HOM05D001463 ORTHO05D001282 1.4e-07 60.5 82 50.0
BcaB02g09077 Brassica carinata HOM05D001463 ORTHO05D001282 1.8e-07 60.1 137 42.3
Carub.0008s1987 Capsella rubella HOM05D001463 ORTHO05D001282 1.8e-07 60.1 122 35.2
TAR369G0036 Trochodendron aralioides HOM05D001463 ORTHO05D001282 1.8e-07 60.1 154 38.3
HanXRQChr14g0458451 Helianthus annuus HOM05D001463 ORTHO05D001282 2.3e-07 59.7 143 37.8
THA.LOC104816242 Tarenaya hassleriana HOM05D001463 ORTHO05D001282 2.3e-07 59.7 124 36.3
Actinidia02902 Actinidia chinensis HOM05D001463 ORTHO05D001282 3.0e-07 59.3 94 42.6
Ciclev10033996m.g Citrus clementina HOM05D001463 ORTHO05D001282 3.0e-07 59.3 167 36.5
MD03G1083100 Malus domestica HOM05D001463 ORTHO05D001282 3.0e-07 59.3 147 35.4
Aa31LG1G11770 Aethionema arabicum HOM05D001463 ORTHO05D001282 3.9e-07 58.9 126 34.9
DCAR_027565 Daucus carota HOM05D001463 ORTHO05D001282 3.9e-07 58.9 151 36.4
Nitab4.5_0002822g0010 Nicotiana tabacum HOM05D001463 ORTHO05D001282 3.9e-07 58.9 88 45.5
Psat5g124880 Pisum sativum HOM05D001463 ORTHO05D001282 3.9e-07 58.9 131 37.4
CANSAT56G2845 Cannabis sativa HOM05D001463 ORTHO05D001282 6.7e-07 58.2 176 38.6
CARHR285550 Cardamine hirsuta HOM05D001463 ORTHO05D001282 6.7e-07 58.2 120 35.0
Manes.02G126600 Manihot esculenta HOM05D001463 ORTHO05D001282 6.7e-07 58.2 75 44.0
Manes.08G082200 Manihot esculenta HOM05D001463 ORTHO05D001282 6.7e-07 58.2 151 33.1
Solyc09g011470.3 Solanum lycopersicum HOM05D001463 ORTHO05D001282 6.7e-07 58.2 148 30.4
AT3G46880 Arabidopsis thaliana HOM05D001463 ORTHO05D001282 8.8e-07 57.8 121 38.0
CARHR134770 Cardamine hirsuta HOM05D001463 ORTHO05D001282 8.8e-07 57.8 138 38.4
COL.COLO4_18603 Corchorus olitorius HOM05D001463 ORTHO05D001282 8.8e-07 57.8 149 32.2
BcaC01g01877 Brassica carinata HOM05D001463 ORTHO05D001282 1.1e-06 57.4 122 39.3
Duzib150G0778 Durio zibethinus HOM05D001463 ORTHO05D001282 1.1e-06 57.4 145 34.5
Nn2g13529 Nelumbo nucifera HOM05D001463 ORTHO05D001282 1.1e-06 57.4 140 36.4
Prupe.6G067400 Prunus persica HOM05D001463 ORTHO05D001282 1.1e-06 57.4 133 37.6
Sed0008803 Sechium edule HOM05D001463 ORTHO05D001282 1.1e-06 57.4 120 37.5
BcaNung07238 Brassica carinata HOM05D001463 ORTHO05D001282 1.5e-06 57.0 79 43.0
FAN16G2865 Fragaria x ananassa HOM05D001463 ORTHO05D001282 1.5e-06 57.0 153 34.6
Nn2g11290 Nelumbo nucifera HOM05D001463 ORTHO05D001282 1.5e-06 57.0 83 44.6
Peaxi162Scf00975g10014 Petunia axillaris HOM05D001463 ORTHO05D001282 1.5e-06 57.0 134 35.1
Sp6g20900 Schrenkiella parvula HOM05D001463 ORTHO05D001282 1.5e-06 57.0 123 35.0
Duzib106G1623 Durio zibethinus HOM05D001463 ORTHO05D001282 2.0e-06 56.6 180 43.9
Sed0005026 Sechium edule HOM05D001463 ORTHO05D001282 2.0e-06 56.6 73 47.9
BcaB02g09079 Brassica carinata HOM05D001463 ORTHO05D001282 2.5e-06 56.2 93 48.4
Thhalv10014998m.g Eutrema salsugineum HOM05D001463 ORTHO05D001282 2.5e-06 56.2 149 30.9
Lj3P960T16 Lonicera japonica HOM05D001463 ORTHO05D001282 2.5e-06 56.2 73 50.7
PGSC0003DMG400002161 Solanum tuberosum HOM05D001463 ORTHO05D001282 2.5e-06 56.2 96 39.6
CSS0007705 Camellia sinensis var. sinensis HOM05D001463 ORTHO05D001282 3.3e-06 55.8 67 52.2
CiPaw.09G201400 Carya illinoinensis HOM05D001463 ORTHO05D001282 3.3e-06 55.8 179 30.2
FAN05G5243 Fragaria x ananassa HOM05D001463 ORTHO05D001282 3.3e-06 55.8 95 41.1
Potri.009G038300 Populus trichocarpa HOM05D001463 ORTHO05D001282 3.3e-06 55.8 149 34.2
AT2G39855 Arabidopsis thaliana HOM05D001463 ORTHO05D001282 4.3e-06 55.5 80 41.2
ECA236G4479 Erigeron canadensis HOM05D001463 ORTHO05D001282 4.3e-06 55.5 130 35.4
FAN25G3555 Fragaria x ananassa HOM05D001463 ORTHO05D001282 4.3e-06 55.5 147 34.0
Hma1.2p1_1521F.1_g288640 Hydrangea macrophylla HOM05D001463 ORTHO05D001282 4.3e-06 55.5 62 48.4
Lalb_Chr19g0125021 Lupinus albus HOM05D001463 ORTHO05D001282 4.3e-06 55.5 174 28.7
Sed0002411 Sechium edule HOM05D001463 ORTHO05D001282 4.3e-06 55.5 105 36.2
AL5G25910 Arabidopsis lyrata HOM05D001463 ORTHO05D001282 5.7e-06 55.1 120 34.2
Thhalv10014930m.g Eutrema salsugineum HOM05D001463 ORTHO05D001282 5.7e-06 55.1 140 36.4
Lalb_Chr01g0022791 Lupinus albus HOM05D001463 ORTHO05D001282 5.7e-06 55.1 74 44.6
Manes.09G098500 Manihot esculenta HOM05D001463 ORTHO05D001282 5.7e-06 55.1 151 31.8
Nitab4.5_0000647g0040 Nicotiana tabacum HOM05D001463 ORTHO05D001282 5.7e-06 55.1 166 33.1
Nitab4.5_0000647g0050 Nicotiana tabacum HOM05D001463 ORTHO05D001282 5.7e-06 55.1 125 40.8
BcaB08g36279 Brassica carinata HOM05D001463 ORTHO05D001282 7.4e-06 54.7 120 34.2
BcaC04g19809 Brassica carinata HOM05D001463 ORTHO05D001282 7.4e-06 54.7 120 34.2
A10p16390 Brassica napus HOM05D001463 ORTHO05D001282 7.4e-06 54.7 120 34.2
C03p71030 Brassica napus HOM05D001224 ORTHO05D016111 7.4e-06 54.7 125 34.4
BraA10t43726Z Brassica rapa HOM05D001463 ORTHO05D001282 7.4e-06 54.7 120 34.2
DCAR_010425 Daucus carota HOM05D001463 ORTHO05D001282 7.4e-06 54.7 61 49.2
MD12G1154800 Malus domestica HOM05D001463 ORTHO05D001282 9.7e-06 54.3 76 43.4


User provided reference genes

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