Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN06G2505 Fragaria x ananassa HOM05D005619 ORTHO05D006696 1.3e-96 356.3 174 100.0
FAN06G3728 Fragaria x ananassa HOM05D005619 ORTHO05D006696 2.7e-65 252.3 149 85.9
FvH4_7g24440 Fragaria vesca HOM05D005619 ORTHO05D006696 2.3e-64 249.2 149 84.6
FAN10G0566 Fragaria x ananassa HOM05D005619 ORTHO05D006696 6.7e-64 247.7 149 83.9
FAN01G2425 Fragaria x ananassa HOM05D005619 ORTHO05D006696 1.9e-63 246.1 149 83.2
RcHm_v2.0_Chr1g0370121 Rosa chinensis HOM05D005619 ORTHO05D006696 4.3e-63 245.0 149 82.6
CANSAT56G2799 Cannabis sativa HOM05D005619 ORTHO05D006696 3.7e-54 215.3 149 71.8
Prupe.2G249700 Prunus persica HOM05D005619 ORTHO05D006696 6.5e-51 204.5 150 66.7
Prupe.2G202300 Prunus persica HOM05D005619 ORTHO05D006696 1.1e-50 203.8 149 67.1
MD01G1152600 Malus domestica HOM05D005619 ORTHO05D006696 3.6e-49 198.7 149 66.4
TAR633G2706 Trochodendron aralioides HOM05D005619 ORTHO05D006696 7.0e-45 184.5 159 59.7
Lj6g0025019 Lotus japonicus HOM05D005619 ORTHO05D006696 1.6e-44 183.3 149 59.7
QL08p063145 Quercus lobata HOM05D005619 ORTHO05D006696 1.6e-44 183.3 149 61.7
AUR62034382 Chenopodium quinoa HOM05D005619 ORTHO05D006696 7.7e-44 181.0 148 60.8
AUR62022323 Chenopodium quinoa HOM05D005619 ORTHO05D006696 1.3e-43 180.3 148 60.8
CsaV3_6G001830 Cucumis sativus L. HOM05D005619 ORTHO05D006696 1.3e-43 180.3 148 61.5
Sed0003089 Sechium edule HOM05D005619 ORTHO05D006696 1.7e-43 179.9 147 61.9
TPR.G16245 Trifolium pratense HOM05D005619 ORTHO05D006696 2.9e-43 179.1 155 60.6
Lj1g0018800 Lotus japonicus HOM05D005619 ORTHO05D006696 3.8e-43 178.7 149 59.1
Psat5g128520 Pisum sativum HOM05D005619 ORTHO05D006696 3.8e-43 178.7 149 60.4
Sc11g0001040 Simmondsia chinensis HOM05D005619 ORTHO05D006696 3.8e-43 178.7 153 59.5
Medtr3g070470 Medicago truncatula HOM05D005619 ORTHO05D006696 8.5e-43 177.6 150 61.3
Lalb_Chr03g0027081 Lupinus albus HOM05D005619 ORTHO05D006696 1.1e-42 177.2 149 59.7
Hund13861 Selenicereus undatus HOM05D005619 ORTHO05D006696 1.1e-42 177.2 150 58.0
Aqoxy4G02564 Aquilegia oxysepala HOM05D005619 ORTHO05D006696 1.9e-42 176.4 148 60.1
arahy.Tifrunner.gnm1.ann1.IDH5I9 Arachis hypogaea HOM05D005619 ORTHO05D006696 4.2e-42 175.3 149 58.4
arahy.Tifrunner.gnm1.ann1.2YL4XG Arachis hypogaea HOM05D005619 ORTHO05D006696 5.5e-42 174.9 149 57.7
Nn2g11500 Nelumbo nucifera HOM05D005619 ORTHO05D006696 5.5e-42 174.9 147 59.2
Phvul.001G242800 Phaseolus vulgaris HOM05D005619 ORTHO05D006696 5.5e-42 174.9 149 58.4
VMungo1383G0062 Vigna mungo HOM05D005619 ORTHO05D006696 5.5e-42 174.9 146 59.6
GSVIVG01032822001 Vitis vinifera HOM05D005619 ORTHO05D006696 7.2e-42 174.5 150 60.0
Glyma.18G027600 Glycine max HOM05D005619 ORTHO05D006696 1.2e-41 173.7 148 58.8
TAR369G0168 Trochodendron aralioides HOM05D005619 ORTHO05D006696 2.7e-41 172.6 149 60.4
Cfa001322 Carpinus fangiana HOM05D005619 ORTHO05D006696 6.1e-41 171.4 142 62.0
PSO339G2325 Papaver somniferum HOM05D005619 ORTHO05D006696 6.1e-41 171.4 148 58.1
Eucgr.G03057 Eucalyptus grandis HOM05D005619 ORTHO05D006696 8.0e-41 171.0 149 58.4
Lj3A878T24 Lonicera japonica HOM05D005619 ORTHO05D006696 8.0e-41 171.0 148 60.8
EL10Ac2g04534 Beta vulgaris HOM05D005619 ORTHO05D006696 1.0e-40 170.6 153 57.5
Haze_17223 Corylus avellana HOM05D005619 ORTHO05D006696 1.8e-40 169.9 142 61.3
Aqoxy5G02842 Aquilegia oxysepala HOM05D005619 ORTHO05D006696 3.0e-40 169.1 148 58.1
Atru.chr12.29 Acer truncatum HOM05D005619 ORTHO05D006696 4.0e-40 168.7 145 58.6
ClCG11G006160 Citrullus lanatus HOM05D005619 ORTHO05D006696 1.5e-39 166.8 147 59.2
Glyma.11G229600 Glycine max HOM05D005619 ORTHO05D006696 2.0e-39 166.4 148 56.1
MBI05_g05306_MAGBIO Magnolia biondii HOM05D005619 ORTHO05D006696 2.0e-39 166.4 148 56.8
CiPaw.08G091200 Carya illinoinensis HOM05D005619 ORTHO05D006696 2.6e-39 166.0 141 58.9
CiPaw.02G192300 Carya illinoinensis HOM05D000781 ORTHO05D000643 3.3e-39 165.6 142 58.5
Dinv16155 Davidia involucrata HOM05D005619 ORTHO05D006696 4.4e-39 165.2 148 59.5
Gohir.A06G163800 Gossypium hirsutum HOM05D005619 ORTHO05D006696 5.7e-39 164.9 149 57.0
Gohir.D06G169500 Gossypium hirsutum HOM05D005619 ORTHO05D006696 5.7e-39 164.9 149 57.0
Gorai.010G198200 Gossypium raimondii HOM05D005619 ORTHO05D006696 5.7e-39 164.9 149 57.0
CARHR135030 Cardamine hirsuta HOM05D005619 ORTHO05D006696 7.5e-39 164.5 149 57.0
DCAR_023625 Daucus carota HOM05D005619 ORTHO05D006696 9.7e-39 164.1 156 54.5
Thhalv10017287m.g Eutrema salsugineum HOM05D005619 ORTHO05D006696 9.7e-39 164.1 149 57.0
Thecc.10G016900 Theobroma cacao HOM05D005619 ORTHO05D006696 1.3e-38 163.7 149 56.4
Duzib114G0170 Durio zibethinus HOM05D005619 ORTHO05D006696 6.3e-38 161.4 149 55.7
PGR142G0483 Punica granatum HOM05D005619 ORTHO05D006696 6.3e-38 161.4 149 55.0
Duzib128G1619 Durio zibethinus HOM05D005619 ORTHO05D006696 1.1e-37 160.6 147 56.5
AT1G19080 Arabidopsis thaliana HOM05D005619 ORTHO05D006696 2.4e-37 159.5 149 55.7
AT3G55490 Arabidopsis thaliana HOM05D005619 ORTHO05D006696 2.4e-37 159.5 149 55.7
Carub.0005s2221 Capsella rubella HOM05D005619 ORTHO05D006696 2.4e-37 159.5 149 54.4
CARHR165540 Cardamine hirsuta HOM05D005619 ORTHO05D006696 2.4e-37 159.5 149 54.4
Cpa.g.sc19.176 Carica papaya HOM05D005619 ORTHO05D006696 2.4e-37 159.5 149 53.7
THA.LOC104824313 Tarenaya hassleriana HOM05D005619 ORTHO05D006696 2.4e-37 159.5 149 55.0
AL5G36640 Arabidopsis lyrata HOM05D005619 ORTHO05D006696 4.1e-37 158.7 149 55.0
Potri.008G068100 Populus trichocarpa HOM05D005619 ORTHO05D006696 1.6e-36 156.8 147 56.5
ECA233G2873 Erigeron canadensis HOM05D005619 ORTHO05D006696 2.0e-36 156.4 147 53.7
Sabra08G0050000 Salix brachista HOM05D005619 ORTHO05D006696 2.7e-36 156.0 147 56.5
Sp4g22380 Schrenkiella parvula HOM05D005619 ORTHO05D006696 3.5e-36 155.6 149 53.7
Lsat_1_v5_gn_8_41961 Lactuca sativa HOM05D005619 ORTHO05D006696 5.9e-36 154.8 147 55.1
MSTRG.870 Avicennia marina HOM05D005619 ORTHO05D006696 1.0e-35 154.1 150 54.7
ECA247G2146 Erigeron canadensis HOM05D005619 ORTHO05D006696 1.0e-35 154.1 147 53.7
COL.COLO4_38547 Corchorus olitorius HOM05D005598 ORTHO05D006587 1.3e-35 153.7 149 53.7
HanXRQChr15g0468911 Helianthus annuus HOM05D005619 ORTHO05D006696 1.3e-35 153.7 147 53.7
Lalb_Chr01g0004131 Lupinus albus HOM05D005619 ORTHO05D006696 1.7e-35 153.3 170 49.4
SGA_v2.0_scaffold170G38815 Striga asiatica HOM05D005619 ORTHO05D006696 1.7e-35 153.3 168 50.0
HanXRQChr09g0271791 Helianthus annuus HOM05D005619 ORTHO05D006696 2.2e-35 152.9 147 53.7
A04p30090 Brassica napus HOM05D005619 ORTHO05D006696 2.9e-35 152.5 146 54.1
Oeu057772.1 Olea europaea HOM05D005619 ORTHO05D006696 2.9e-35 152.5 150 54.7
Actinidia31994 Actinidia chinensis HOM05D005619 ORTHO05D006696 3.8e-35 152.1 148 55.4
BcaNung05464 Brassica carinata HOM05D005619 ORTHO05D006696 3.8e-35 152.1 149 53.0
BraA04t18498Z Brassica rapa HOM05D005619 ORTHO05D006696 3.8e-35 152.1 149 53.0
HanXRQChr08g0213181 Helianthus annuus HOM05D005619 ORTHO05D006696 3.8e-35 152.1 147 53.1
Hma1.2p1_2256F.1_g318210 Hydrangea macrophylla HOM05D005619 ORTHO05D006696 5.0e-35 151.8 148 56.8
CSS0006460 Camellia sinensis var. sinensis HOM05D005619 ORTHO05D006696 6.5e-35 151.4 136 58.8
CDE04G2394 Ceratophyllum demersum HOM05D005619 ORTHO05D006696 6.5e-35 151.4 145 55.2
Cc03_g13530 Coffea canephora HOM05D005619 ORTHO05D006696 6.5e-35 151.4 155 53.5
DCAR_026757 Daucus carota HOM05D005619 ORTHO05D006696 6.5e-35 151.4 155 54.8
Potri.010G189200 Populus trichocarpa HOM05D005619 ORTHO05D006696 2.5e-34 149.4 147 54.4
BcaC02g07350 Brassica carinata HOM05D005619 ORTHO05D006696 5.5e-34 148.3 146 53.4
C04p67770 Brassica napus HOM05D005619 ORTHO05D006696 5.5e-34 148.3 146 53.4
Manes.04G157300 Manihot esculenta HOM05D005619 ORTHO05D006696 7.2e-34 147.9 149 51.7
ATR0481G004 Amborella trichopoda HOM05D005619 ORTHO05D006696 1.2e-33 147.1 150 48.7
CSS0006168 Camellia sinensis var. sinensis HOM05D005619 ORTHO05D006696 1.6e-33 146.7 148 54.1
BolC4t28280H Brassica oleracea HOM05D005619 ORTHO05D006696 2.1e-33 146.4 144 53.5
Ciclev10033435m.g Citrus clementina HOM05D005619 ORTHO05D006696 3.6e-33 145.6 134 54.5
SalBow8G4625 Salvia bowleyana HOM05D005619 ORTHO05D006696 3.6e-33 145.6 150 52.7
Migut.E00386 Erythranthe guttata HOM05D005619 ORTHO05D006696 4.7e-33 145.2 150 51.3
SalBow8G2997 Salvia bowleyana HOM05D005619 ORTHO05D006696 6.1e-33 144.8 141 56.0
unitig_52.g17125 Utricularia gibba HOM05D005619 ORTHO05D006696 6.1e-33 144.8 157 50.3
Cc03_g10740 Coffea canephora HOM05D005619 ORTHO05D006696 1.0e-32 144.1 150 50.7
Os08g0274700 Oryza sativa ssp. japonica HOM05D005619 ORTHO05D006696 1.4e-32 143.7 149 51.0
Zm00001eb412290 Zea mays HOM05D005619 ORTHO05D006696 1.4e-32 143.7 149 51.7
HPP92_000422 Vanilla planifolia HOM05D000755 ORTHO05D006696 1.8e-32 143.3 150 51.3
Peaxi162Scf00451g00930 Petunia axillaris HOM05D005619 ORTHO05D006696 3.0e-32 142.5 150 52.7
HPP92_000355 Vanilla planifolia HOM05D000755 ORTHO05D000642 4.0e-32 142.1 150 50.7
Zm00001eb198650 Zea mays HOM05D005619 ORTHO05D006696 5.2e-32 141.7 149 51.7
Solyc05g008620.4 Solanum lycopersicum HOM05D005619 ORTHO05D006696 6.8e-32 141.4 151 52.3
CAN.G1489.22 Capsicum annuum HOM05D005619 ORTHO05D006696 8.8e-32 141.0 150 53.3
SMO356G0622 Selaginella moellendorffii HOM05D005619 ORTHO05D006696 1.2e-31 140.6 148 51.4
PGSC0003DMG400030566 Solanum tuberosum HOM05D005619 ORTHO05D006696 2.0e-31 139.8 150 52.0
Sopen05g004460 Solanum pennellii HOM05D005619 ORTHO05D006696 3.4e-31 139.0 150 52.0
MELO3C029903.2 Cucumis melo HOM05D005619 ORTHO05D006696 1.7e-30 136.7 162 51.9
TWI53G0619 Tripterygium wilfordii HOM05D005619 ORTHO05D006696 3.7e-30 135.6 129 53.5
Nitab4.5_0000350g0020 Nicotiana tabacum HOM05D005619 ORTHO05D006696 7.0e-29 131.3 136 52.2
Mapoly0034s0059 Marchantia polymorpha HOM05D005619 ORTHO05D006696 1.2e-28 130.6 150 45.3
Mapoly0053s0030 Marchantia polymorpha HOM05D005619 ORTHO05D006696 1.7e-27 126.7 148 43.9
BcaC02g07392 Brassica carinata HOM05D005619 ORTHO05D006696 2.9e-27 125.9 131 51.9
COL.COLO4_25718 Corchorus olitorius HOM05D005619 ORTHO05D006696 6.5e-27 124.8 149 48.3
Sabra10G0145900 Salix brachista HOM05D005619 ORTHO05D006696 5.5e-26 121.7 131 51.9
Aa31LG5G19540 Aethionema arabicum HOM05D005619 ORTHO05D006696 6.1e-25 118.2 103 56.3
AagrBONN_evm.TU.Sc2ySwM_228.5247 Anthoceros agrestis HOM05D005619 ORTHO05D006696 1.0e-24 117.5 130 45.4
TWI73G0774 Tripterygium wilfordii HOM05D005619 ORTHO05D006696 2.3e-24 116.3 148 45.3
CARHR159370 Cardamine hirsuta HOM05D005619 ORTHO05D006696 4.4e-23 112.1 113 49.6
CBR_g38120 Chara braunii HOM05D005619 ORTHO05D006696 7.5e-23 111.3 151 39.7
Pp3c25_12660 Physcomitrium patens HOM05D005619 ORTHO05D006696 7.5e-23 111.3 148 43.2
AagrBONN_evm.TU.Sc2ySwM_344.729 Anthoceros agrestis HOM05D005619 ORTHO05D006696 2.8e-22 109.4 147 41.5
Peaxi162Scf00205g01136 Petunia axillaris HOM05D005619 ORTHO05D006696 8.3e-22 107.8 111 53.2
Nitab4.5_0003886g0110 Nicotiana tabacum HOM05D005619 ORTHO05D006696 4.1e-21 105.5 136 47.1
ATR0568G146 Amborella trichopoda HOM05D005619 ORTHO05D006696 1.2e-15 87.4 71 56.3
C04p07340 Brassica napus HOM05D004515 ORTHO05D006013 1.5e-15 87.0 126 43.7
BcaB08g35316 Brassica carinata HOM05D005619 ORTHO05D006696 5.8e-15 85.1 56 66.1
AagrBONN_evm.TU.Sc2ySwM_344.737 Anthoceros agrestis HOM05D005619 ORTHO05D006696 2.9e-14 82.8 102 44.1
MCO08G248 Micromonas commoda HOM05D005619 ORTHO05D006696 1.3e-11 73.9 149 32.9
HanXRQChr12g0375531 Helianthus annuus HOM05D005619 ORTHO05D006696 3.9e-11 72.4 61 54.1
Actinidia33632 Actinidia chinensis HOM05D005619 ORTHO05D006696 1.2e-09 67.4 98 44.9
BolC4t22357H Brassica oleracea HOM05D004515 ORTHO05D006013 8.0e-09 64.7 78 44.9
Cre06.g251750 Chlamydomonas reinhardtii HOM05D005619 ORTHO05D006696 8.0e-09 64.7 132 28.0
Cfa027228 Carpinus fangiana HOM05D005619 ORTHO05D006696 6.8e-08 61.6 126 28.6
HanXRQChr01g0017101 Helianthus annuus HOM05D005619 ORTHO05D006696 1.3e-06 57.4 62 48.4
QL03p009034 Quercus lobata HOM05D000946 ORTHO05D006696 4.9e-06 55.5 35 62.9


User provided reference genes

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