Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN06G2494 Fragaria x ananassa HOM05D004925 ORTHO05D005643 3.0e-121 438.7 254 100.0
FvH4_7g00160 Fragaria vesca HOM05D004925 ORTHO05D005643 4.0e-118 428.3 255 94.9
FAN10G2396 Fragaria x ananassa HOM05D004925 ORTHO05D005643 1.1e-115 420.2 254 92.9
FAN01G2076 Fragaria x ananassa HOM05D004925 ORTHO05D005643 7.2e-107 391.0 254 84.3
FAN01G0312 Fragaria x ananassa HOM05D004925 ORTHO05D005643 2.5e-104 382.5 258 82.9
FAN03G1097 Fragaria x ananassa HOM05D004925 ORTHO05D005643 8.2e-103 377.5 254 82.7
RcHm_v2.0_Chr1g0313411 Rosa chinensis HOM05D004925 ORTHO05D005643 9.4e-91 337.4 260 73.5
MD07G1002600 Malus domestica HOM05D004925 ORTHO05D005643 3.7e-55 219.2 313 47.6
MD02G1318600 Malus domestica HOM05D004925 ORTHO05D005643 1.2e-50 204.1 317 46.4
CiPaw.13G000800 Carya illinoinensis HOM05D004925 ORTHO05D005643 9.8e-48 194.5 156 65.4
Manes.10G151100 Manihot esculenta HOM05D004925 ORTHO05D005643 1.1e-46 191.0 171 60.8
Cfa004806 Carpinus fangiana HOM05D004925 ORTHO05D005643 3.5e-45 186.0 257 49.0
TWI09G1281 Tripterygium wilfordii HOM05D004925 ORTHO05D005643 3.5e-45 186.0 160 61.9
CANSAT11G0505 Cannabis sativa HOM05D004925 ORTHO05D005643 1.3e-44 184.1 159 61.6
Dinv43931 Davidia involucrata HOM05D004925 ORTHO05D005643 3.9e-44 182.6 159 65.4
Haze_10419 Corylus avellana HOM05D006965 ORTHO05D008652 6.6e-44 181.8 145 68.3
Haze_10424 Corylus avellana HOM05D006965 ORTHO05D008652 6.6e-44 181.8 145 68.3
ClCG10G012660 Citrullus lanatus HOM05D004925 ORTHO05D005643 8.6e-44 181.4 158 61.4
Sed0003173 Sechium edule HOM05D004925 ORTHO05D005643 2.5e-43 179.9 155 60.6
CsaV3_3G032460 Cucumis sativus L. HOM05D004925 ORTHO05D005643 3.3e-43 179.5 156 61.5
Dinv43491 Davidia involucrata HOM05D004925 ORTHO05D005643 7.3e-43 178.3 161 64.6
TWI73G1095 Tripterygium wilfordii HOM05D004925 ORTHO05D005643 1.2e-42 177.6 171 60.8
Peaxi162Scf00878g00036 Petunia axillaris HOM05D004925 ORTHO05D005643 2.8e-42 176.4 161 60.2
CAN.G261.6 Capsicum annuum HOM05D004925 ORTHO05D005643 4.7e-42 175.6 155 61.3
Sopen01g033490 Solanum pennellii HOM05D004925 ORTHO05D005643 2.3e-41 173.3 155 61.3
Thecc.01G416300 Theobroma cacao HOM05D004925 ORTHO05D005643 3.1e-41 172.9 162 59.9
Solyc01g073920.3 Solanum lycopersicum HOM05D004925 ORTHO05D005643 4.0e-41 172.6 155 61.3
COL.COLO4_25137 Corchorus olitorius HOM05D004925 ORTHO05D005643 6.8e-41 171.8 214 47.7
Hma1.2p1_0860F.1_g229570 Hydrangea macrophylla HOM05D004925 ORTHO05D005643 8.9e-41 171.4 160 61.9
GSVIVG01001367001 Vitis vinifera HOM05D004925 ORTHO05D005643 8.9e-41 171.4 259 45.6
Cpa.g.sc189.17 Carica papaya HOM05D004925 ORTHO05D005643 1.2e-40 171.0 151 65.6
Gohir.A08G026720 Gossypium hirsutum HOM05D004925 ORTHO05D005643 2.0e-40 170.2 152 57.2
Gohir.D08G037401 Gossypium hirsutum HOM05D004925 ORTHO05D005643 2.6e-40 169.9 143 60.1
Gorai.004G035400 Gossypium raimondii HOM05D004925 ORTHO05D005643 3.4e-40 169.5 143 60.1
Potri.001G229800 Populus trichocarpa HOM05D004925 ORTHO05D005643 3.4e-40 169.5 169 58.0
Nn2g15712 Nelumbo nucifera HOM05D004925 ORTHO05D005643 5.8e-40 168.7 153 59.5
arahy.Tifrunner.gnm1.ann1.WEBP2W Arachis hypogaea HOM05D004925 ORTHO05D005643 7.5e-40 168.3 159 58.5
QL04p000066 Quercus lobata HOM05D004925 ORTHO05D005643 1.7e-39 167.2 167 58.1
Duzib114G0283 Durio zibethinus HOM05D004925 ORTHO05D005643 2.2e-39 166.8 160 56.2
TAR623G0394 Trochodendron aralioides HOM05D004925 ORTHO05D005643 3.7e-39 166.0 155 59.4
Glyma.08G148900 Glycine max HOM05D004925 ORTHO05D005643 4.9e-39 165.6 280 42.5
Phvul.005G039900 Phaseolus vulgaris HOM05D004925 ORTHO05D005643 4.1e-38 162.5 160 58.1
QL04p003160 Quercus lobata HOM05D004925 ORTHO05D005643 1.6e-37 160.6 215 48.4
Rhsim01G0134400 Rhododendron simsii HOM05D004925 ORTHO05D005643 1.6e-37 160.6 156 59.6
Sc17g0006850 Simmondsia chinensis HOM05D004925 ORTHO05D005643 1.6e-37 160.6 160 54.4
MELO3C030929.2 Cucumis melo HOM05D004925 ORTHO05D005643 4.6e-37 159.1 209 46.9
Atru.chr11.2695 Acer truncatum HOM05D004925 ORTHO05D005643 1.3e-36 157.5 257 43.2
Migut.N01664 Erythranthe guttata HOM05D004925 ORTHO05D005643 1.3e-36 157.5 158 56.3
SGA_v2.0_scaffold95G28775 Striga asiatica HOM05D004925 ORTHO05D005643 1.3e-36 157.5 161 58.4
MSTRG.5000 Avicennia marina HOM05D004925 ORTHO05D005643 1.7e-36 157.1 261 43.3
Cc02_g27070 Coffea canephora HOM05D004925 ORTHO05D005643 3.9e-36 156.0 157 57.3
Glyma.15G269200 Glycine max HOM05D004925 ORTHO05D005643 5.1e-36 155.6 299 39.8
Oeu053533.1 Olea europaea HOM05D004925 ORTHO05D005643 5.1e-36 155.6 160 54.4
SalBow4G3044 Salvia bowleyana HOM05D004925 ORTHO05D005643 8.6e-36 154.8 158 55.1
arahy.Tifrunner.gnm1.ann1.BFX48A Arachis hypogaea HOM05D004925 ORTHO05D005643 1.5e-35 154.1 159 54.7
SalBow4G1354 Salvia bowleyana HOM05D004925 ORTHO05D005643 1.9e-35 153.7 158 55.1
TAR369G0809 Trochodendron aralioides HOM05D004925 ORTHO05D005643 2.5e-35 153.3 151 55.0
THA.LOC104801020 Tarenaya hassleriana HOM05D004925 ORTHO05D005643 3.3e-35 152.9 153 59.5
AL4G28340 Arabidopsis lyrata HOM05D004925 ORTHO05D005643 7.3e-35 151.8 150 57.3
Nitab4.5_0000892g0140 Nicotiana tabacum HOM05D004925 ORTHO05D005643 1.2e-34 151.0 193 47.7
Hund25510 Selenicereus undatus HOM05D004925 ORTHO05D005643 2.1e-34 150.2 157 56.7
Prupe.2G004100 Prunus persica HOM05D004925 ORTHO05D005643 6.2e-34 148.7 319 40.4
Eucgr.G03409 Eucalyptus grandis HOM05D004925 ORTHO05D005643 1.1e-33 147.9 150 55.3
Medtr2g060910 Medicago truncatula HOM05D004925 ORTHO05D005643 1.4e-33 147.5 143 58.0
CARHR126790 Cardamine hirsuta HOM05D004925 ORTHO05D005643 3.1e-33 146.4 151 55.6
AT2G32840 Arabidopsis thaliana HOM05D004925 ORTHO05D005643 6.8e-33 145.2 150 57.3
Carub.0004s1427 Capsella rubella HOM05D004925 ORTHO05D005643 6.8e-33 145.2 150 56.0
Lalb_Chr03g0033881 Lupinus albus HOM05D004925 ORTHO05D005643 6.8e-33 145.2 152 52.0
Thhalv10016920m.g Eutrema salsugineum HOM05D004925 ORTHO05D005643 1.5e-32 144.1 151 56.3
Sp4g15220 Schrenkiella parvula HOM05D004925 ORTHO05D005643 2.6e-32 143.3 151 55.6
ECA248G0029 Erigeron canadensis HOM05D004925 ORTHO05D005643 1.3e-31 141.0 156 51.3
Ca_02951_v3 Cicer arietinum L. HOM05D004925 ORTHO05D005643 2.9e-31 139.8 145 55.2
Actinidia15855 Actinidia chinensis HOM05D004925 ORTHO05D005643 6.4e-31 138.7 175 50.3
Aqoxy1G00133 Aquilegia oxysepala HOM05D004925 ORTHO05D005643 1.1e-30 137.9 155 51.6
BcaB02g10501 Brassica carinata HOM05D004925 ORTHO05D005643 1.4e-30 137.5 152 54.6
BraA10t42612Z Brassica rapa HOM05D004925 ORTHO05D005643 1.4e-30 137.5 157 51.6
PSO384G4128 Papaver somniferum HOM05D004925 ORTHO05D005643 2.4e-30 136.7 154 50.0
BcaB01g00977 Brassica carinata HOM05D004925 ORTHO05D005643 3.2e-30 136.3 154 56.5
MBI19_g23208_MAGBIO Magnolia biondii HOM05D004925 ORTHO05D005643 3.2e-30 136.3 156 51.9
TPR.G11699 Trifolium pratense HOM05D004925 ORTHO05D005643 5.4e-30 135.6 140 56.4
Lsat_1_v5_gn_1_110881 Lactuca sativa HOM05D004925 ORTHO05D005643 1.6e-29 134.0 149 51.0
Lj3g0011601 Lotus japonicus HOM05D004925 ORTHO05D005643 1.6e-29 134.0 182 47.3
HanXRQChr01g0018661 Helianthus annuus HOM05D004925 ORTHO05D005643 2.1e-29 133.7 149 51.7
A10p03360 Brassica napus HOM05D004925 ORTHO05D005643 3.5e-29 132.9 149 53.0
Ciclev10032226m.g Citrus clementina HOM05D004925 ORTHO05D005643 3.5e-29 132.9 167 48.5
vmacro12585 Vaccinium macrocarpon HOM05D004925 ORTHO05D005643 3.5e-29 132.9 214 43.5
Actinidia21578 Actinidia chinensis HOM05D004925 ORTHO05D005643 4.6e-29 132.5 139 54.7
CDE04G0753 Ceratophyllum demersum HOM05D004925 ORTHO05D005643 7.8e-29 131.7 159 49.7
C04p16720 Brassica napus HOM05D004925 ORTHO05D005643 1.0e-28 131.3 149 55.0
Aa31LG5G4490 Aethionema arabicum HOM05D004925 ORTHO05D005643 1.3e-28 131.0 149 54.4
BraA05t20219Z Brassica rapa HOM05D004925 ORTHO05D005643 1.3e-28 131.0 155 55.5
Thhalv10009447m.g Eutrema salsugineum HOM05D004925 ORTHO05D005643 1.7e-28 130.6 151 53.0
Oeu024926.1 Olea europaea HOM05D004925 ORTHO05D005643 1.7e-28 130.6 246 35.8
A05p12810 Brassica napus HOM05D004925 ORTHO05D005643 2.3e-28 130.2 153 54.2
HanXRQChr11g0341641 Helianthus annuus HOM05D004925 ORTHO05D005643 3.9e-28 129.4 157 47.8
Sp1g03770 Schrenkiella parvula HOM05D004925 ORTHO05D005643 6.6e-28 128.6 150 53.3
Sed0010000 Sechium edule HOM05D004925 ORTHO05D005643 1.1e-27 127.9 157 47.8
C05p03080 Brassica napus HOM05D004925 ORTHO05D005643 4.3e-27 125.9 144 52.1
BolC5t29090H Brassica oleracea HOM05D004925 ORTHO05D005643 4.3e-27 125.9 144 52.1
HanXRQChr11g0341651 Helianthus annuus HOM05D004925 ORTHO05D005643 5.6e-27 125.6 144 50.0
Lalb_Chr25g0283541 Lupinus albus HOM05D004925 ORTHO05D005643 9.6e-27 124.8 235 38.3
unitig_22.g5889 Utricularia gibba HOM05D004925 ORTHO05D005643 9.6e-27 124.8 139 51.1
Medtr4g125960 Medicago truncatula HOM05D004925 ORTHO05D005643 1.6e-26 124.0 143 52.4
THA.LOC104816029 Tarenaya hassleriana HOM05D004925 ORTHO05D005643 6.2e-26 122.1 149 49.7
HanXRQChr11g0341871 Helianthus annuus HOM05D004925 ORTHO05D005643 8.1e-26 121.7 144 47.9
BolC4t23220H Brassica oleracea HOM05D004925 ORTHO05D005643 1.8e-25 120.6 289 37.0
PGR119G0958 Punica granatum HOM05D004925 ORTHO05D005643 1.5e-24 117.5 147 47.6
CARHR004330 Cardamine hirsuta HOM05D004925 ORTHO05D005643 4.4e-24 115.9 141 49.6
PSO339G6120 Papaver somniferum HOM05D004925 ORTHO05D005643 4.4e-24 115.9 155 46.5
AUR62015612 Chenopodium quinoa HOM05D004925 ORTHO05D005643 5.8e-24 115.5 128 53.9
vmacro21158 Vaccinium macrocarpon HOM05D004925 ORTHO05D005643 8.4e-23 111.7 219 39.3
SGA_v2.0_scaffold4G02236 Striga asiatica HOM05D001227 ORTHO05D001082 5.1e-20 102.4 179 40.2
EL10Ac8g20283 Beta vulgaris HOM05D004925 ORTHO05D005643 3.3e-19 99.8 111 51.4
Zm00001eb399260 Zea mays HOM05D004925 ORTHO05D005643 3.3e-19 99.8 142 43.0
Sabra16G0137200 Salix brachista HOM05D004925 ORTHO05D005643 7.3e-19 98.6 99 58.6
AT1G04930 Arabidopsis thaliana HOM05D004925 ORTHO05D005643 2.1e-18 97.1 140 42.9
Aa31LG1G19930 Aethionema arabicum HOM05D004925 ORTHO05D005643 3.6e-18 96.3 116 50.0
ATR0598G164 Amborella trichopoda HOM05D004925 ORTHO05D005643 6.2e-18 95.5 139 46.0
SEGI_38326 Sequoiadendron giganteum HOM05D004925 ORTHO05D005643 8.1e-18 95.1 163 39.9
vmacro21156 Vaccinium macrocarpon HOM05D004925 ORTHO05D005643 3.1e-17 93.2 187 35.8
CDE06G1226 Ceratophyllum demersum HOM05D004925 ORTHO05D005643 1.5e-16 90.9 155 40.6
Nitab4.5_0005278g0010 Nicotiana tabacum HOM05D004925 ORTHO05D005643 5.8e-16 89.0 109 47.7
HPP92_020314 Vanilla planifolia HOM05D004925 ORTHO05D005643 6.4e-15 85.5 143 39.9
A09p67630 Brassica napus HOM05D004925 ORTHO05D005643 9.3e-14 81.6 109 48.6
HanXRQChr11g0341671 Helianthus annuus HOM05D004925 ORTHO05D005643 1.2e-13 81.3 144 40.3
Haze_10406 Corylus avellana HOM05D004925 ORTHO05D005643 2.1e-13 80.5 65 64.6
Mapoly0040s0118 Marchantia polymorpha HOM05D004925 ORTHO05D005643 2.7e-13 80.1 147 36.7
AL1G14650 Arabidopsis lyrata HOM05D004925 ORTHO05D005643 6.0e-13 79.0 139 38.1
CSS0038538 Camellia sinensis var. sinensis HOM05D004925 ORTHO05D005643 1.3e-12 77.8 79 54.4
Lj7A564G31 Lonicera japonica HOM05D004925 ORTHO05D005643 6.7e-12 75.5 56 64.3
Pp3c22_21740 Physcomitrium patens HOM05D004925 ORTHO05D005643 8.7e-12 75.1 136 39.0
vmacro21157 Vaccinium macrocarpon HOM05D004925 ORTHO05D005643 1.1e-11 74.7 232 28.9
BcaB03g16450 Brassica carinata HOM05D000563 ORTHO05D005643 1.6e-10 70.9 91 48.4
Oeu013586.1 Olea europaea HOM05D004925 ORTHO05D005643 6.2e-10 68.9 58 55.2
Rhsim06G0015600 Rhododendron simsii HOM05D004925 ORTHO05D005643 6.2e-10 68.9 205 30.2
BcaB03g16451 Brassica carinata HOM05D004925 ORTHO05D005643 1.8e-09 67.4 88 48.9
BraA09t42096Z Brassica rapa HOM05D000053 ORTHO05D000035 1.5e-08 64.3 88 48.9
BcaB03g16455 Brassica carinata HOM05D004489 ORTHO05D005643 1.7e-07 60.8 86 46.5
Os03g0234600 Oryza sativa ssp. japonica HOM05D004925 ORTHO05D005643 3.8e-07 59.7 192 28.1
PGSC0003DMG400006329 Solanum tuberosum HOM05D004925 ORTHO05D005643 4.9e-07 59.3 71 46.5


User provided reference genes

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