Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN06G2356 Fragaria x ananassa HOM05D005963 ORTHO05D006869 0.0e+00 1961.8 964 100.0
FAN06G4856 Fragaria x ananassa HOM05D005963 ORTHO05D006869 0.0e+00 1954.5 964 99.7
FvH4_7g28640 Fragaria vesca HOM05D005963 ORTHO05D006869 0.0e+00 1924.8 964 98.8
FAN03G0518 Fragaria x ananassa HOM05D005963 ORTHO05D006869 0.0e+00 1895.9 964 96.6
FAN01G2646 Fragaria x ananassa HOM05D005963 ORTHO05D006869 0.0e+00 1877.4 964 96.2
FAN10G3242 Fragaria x ananassa HOM05D005963 ORTHO05D006869 0.0e+00 1751.9 972 90.5
RcHm_v2.0_Chr1g0376121 Rosa chinensis HOM05D005963 ORTHO05D006869 0.0e+00 1748.0 998 87.7
FAN03G0902 Fragaria x ananassa HOM05D005963 ORTHO05D006869 0.0e+00 1420.2 749 92.4
Prupe.2G286400 Prunus persica HOM05D005963 ORTHO05D006869 0.0e+00 1277.3 1031 66.9
MD00G1003400 Malus domestica HOM05D005963 ORTHO05D006869 0.0e+00 1256.1 970 68.6
MD01G1192000 Malus domestica HOM05D005963 ORTHO05D006869 0.0e+00 1235.7 984 66.6
Thecc.03G166100 Theobroma cacao HOM05D005963 ORTHO05D006869 0.0e+00 1214.9 1006 65.0
QL12p038851 Quercus lobata HOM05D005963 ORTHO05D006869 0.0e+00 1207.2 1014 64.2
GSVIVG01018456001 Vitis vinifera HOM05D005963 ORTHO05D006869 0.0e+00 1189.9 953 65.1
Ciclev10004233m.g Citrus clementina HOM05D005963 ORTHO05D006869 0.0e+00 1181.4 992 64.4
Potri.012G132300 Populus trichocarpa HOM05D005963 ORTHO05D006869 0.0e+00 1178.3 1030 62.2
Duzib205G1443 Durio zibethinus HOM05D005963 ORTHO05D006869 0.0e+00 1171.0 985 63.6
CSS0028871 Camellia sinensis var. sinensis HOM05D005963 ORTHO05D006869 0.0e+00 1168.7 1024 61.6
Haze_13797 Corylus avellana HOM05D005963 ORTHO05D006869 0.0e+00 1166.8 939 65.9
Cpa.g.sc4.183 Carica papaya HOM05D005963 ORTHO05D006869 0.0e+00 1159.8 1035 60.8
Duzib068G1175 Durio zibethinus HOM05D005963 ORTHO05D006869 0.0e+00 1158.7 1042 60.2
CiPaw.03G099400 Carya illinoinensis HOM05D005963 ORTHO05D006869 0.0e+00 1152.5 961 64.0
CAN.G1257.1 Capsicum annuum HOM05D005963 ORTHO05D006869 0.0e+00 1138.3 1026 59.6
Nitab4.5_0000124g0020 Nicotiana tabacum HOM05D005963 ORTHO05D006869 0.0e+00 1129.4 980 60.4
Hma1.2p1_0488F.1_g163860 Hydrangea macrophylla HOM05D005963 ORTHO05D006869 0.0e+00 1126.3 1009 60.2
Nn6g34339 Nelumbo nucifera HOM05D005963 ORTHO05D006869 0.0e+00 1126.3 992 61.3
Peaxi162Scf00192g00613 Petunia axillaris HOM05D005963 ORTHO05D006869 0.0e+00 1126.3 935 62.8
TWI14G0479 Tripterygium wilfordii HOM05D005963 ORTHO05D006869 0.0e+00 1120.1 977 61.4
CiPaw.04G064800 Carya illinoinensis HOM05D005963 ORTHO05D006869 0.0e+00 1115.9 1030 61.2
Nitab4.5_0000371g0030 Nicotiana tabacum HOM05D005963 ORTHO05D006869 0.0e+00 1112.8 950 60.6
Oeu030146.1 Olea europaea HOM05D005963 ORTHO05D006869 0.0e+00 1109.7 963 61.6
Oeu030148.1 Olea europaea HOM05D005963 ORTHO05D006869 0.0e+00 1109.4 963 61.6
PGR142G0011 Punica granatum HOM05D005963 ORTHO05D006869 0.0e+00 1108.2 983 60.5
Solyc03g006900.2 Solanum lycopersicum HOM05D005963 ORTHO05D006869 0.0e+00 1107.4 1019 58.6
Actinidia25056 Actinidia chinensis HOM05D005963 ORTHO05D006869 0.0e+00 1106.7 937 62.6
Manes.06G140900 Manihot esculenta HOM05D005963 ORTHO05D006869 0.0e+00 1106.7 1025 59.1
Sopen03g002900 Solanum pennellii HOM05D005963 ORTHO05D006869 0.0e+00 1106.3 1021 58.2
Sabra12G0099600 Salix brachista HOM05D005963 ORTHO05D006869 0.0e+00 1105.9 1015 61.3
Rhsim03G0174100 Rhododendron simsii HOM05D005963 ORTHO05D006869 0.0e+00 1104.0 1011 59.3
Actinidia13537 Actinidia chinensis HOM05D005963 ORTHO05D006869 0.0e+00 1101.3 1009 59.2
SHI13839 Sapria himalayana HOM05D005963 ORTHO05D006869 0.0e+00 1086.6 1020 58.3
ECA232G0907 Erigeron canadensis HOM05D005963 ORTHO05D006869 2.3e-307 1058.9 943 59.3
Eucgr.K00183 Eucalyptus grandis HOM05D005963 ORTHO05D006869 2.0e-306 1055.8 1036 56.9
TAR374G1343 Trochodendron aralioides HOM05D005963 ORTHO05D006869 6.3e-305 1050.8 990 58.2
Aqoxy7G00515 Aquilegia oxysepala HOM05D005963 ORTHO05D006869 9.1e-304 1047.0 939 58.8
HanXRQChr15g0486261 Helianthus annuus HOM05D005963 ORTHO05D006869 3.0e-299 1031.9 953 58.7
Lsat_1_v5_gn_9_53261 Lactuca sativa HOM05D005963 ORTHO05D006869 8.3e-297 1023.8 1022 55.2
Gorai.008G282200 Gossypium raimondii HOM05D005963 ORTHO05D006869 2.4e-296 1022.3 895 60.1
Gohir.D12G263300 Gossypium hirsutum HOM05D005963 ORTHO05D006869 1.2e-295 1020.0 895 60.0
DCAR_018136 Daucus carota HOM05D005963 ORTHO05D006869 7.7e-295 1017.3 989 56.0
VMungo0464G1720 Vigna mungo HOM05D005963 ORTHO05D006869 4.0e-291 1005.0 1004 56.2
Gohir.A12G262600 Gossypium hirsutum HOM05D005963 ORTHO05D006869 6.8e-291 1004.2 858 60.7
arahy.Tifrunner.gnm1.ann1.G2RQNR Arachis hypogaea HOM05D005963 ORTHO05D006869 4.4e-290 1001.5 992 56.6
HanXRQChr14g0433491 Helianthus annuus HOM05D005963 ORTHO05D006869 1.3e-289 1000.0 937 57.6
arahy.Tifrunner.gnm1.ann1.R4K09I Arachis hypogaea HOM05D005963 ORTHO05D006869 3.8e-286 988.4 961 56.6
Glyma.09G149700 Glycine max HOM05D005963 ORTHO05D006869 1.9e-285 986.1 983 55.3
MELO3C006856.2 Cucumis melo HOM05D005963 ORTHO05D006869 1.0e-283 980.3 1041 52.4
Phvul.004G124000 Phaseolus vulgaris HOM05D005963 ORTHO05D006869 1.5e-282 976.5 999 54.9
Medtr0007s0220 Medicago truncatula HOM05D005963 ORTHO05D006869 7.5e-282 974.2 976 54.5
Gorai.001G047400 Gossypium raimondii HOM05D005963 ORTHO05D006869 1.3e-281 973.4 1010 55.0
Lalb_Chr19g0131211 Lupinus albus HOM05D005963 ORTHO05D006869 1.3e-281 973.4 1018 55.2
Dinv35132 Davidia involucrata HOM05D005963 ORTHO05D006869 8.3e-281 970.7 1018 54.7
Sed0018627 Sechium edule HOM05D005963 ORTHO05D006869 2.7e-279 965.7 990 53.5
Lj8C34G2 Lonicera japonica HOM05D005963 ORTHO05D006869 4.6e-279 964.9 948 55.7
vmacro22547 Vaccinium macrocarpon HOM05D005963 ORTHO05D006869 5.0e-278 961.4 832 59.7
Lj2g0022710 Lotus japonicus HOM05D005963 ORTHO05D006869 5.6e-277 958.0 1033 53.2
PSO782G2761 Papaver somniferum HOM05D005963 ORTHO05D006869 5.6e-277 958.0 976 54.2
Psat1g106960 Pisum sativum HOM05D005963 ORTHO05D006869 2.6e-274 949.1 998 53.3
PSO478G0110 Papaver somniferum HOM05D005963 ORTHO05D006869 1.4e-272 943.3 952 54.3
CsaV3_3G016590 Cucumis sativus L. HOM05D005963 ORTHO05D006869 3.5e-271 938.7 1051 50.7
TPR.G26590 Trifolium pratense HOM05D005963 ORTHO05D006869 6.6e-270 934.5 971 53.0
Dinv28513 Davidia involucrata HOM05D005963 ORTHO05D006869 2.3e-267 926.0 969 53.9
Thhalv10015853m.g Eutrema salsugineum HOM05D005963 ORTHO05D006869 5.2e-267 924.9 950 53.2
ClCG05G007670 Citrullus lanatus HOM05D005963 ORTHO05D006869 1.2e-266 923.7 1032 49.8
COL.COLO4_14220 Corchorus olitorius HOM05D005963 ORTHO05D006869 6.4e-265 917.9 838 58.0
THA.LOC104825083 Tarenaya hassleriana HOM05D005963 ORTHO05D006869 1.9e-264 916.4 853 56.7
Carub.0008s1182 Capsella rubella HOM05D005963 ORTHO05D006869 1.0e-262 910.6 1015 51.6
AL8G26090 Arabidopsis lyrata HOM05D005963 ORTHO05D006869 1.3e-262 910.2 960 52.3
Sp6g14050 Schrenkiella parvula HOM05D005963 ORTHO05D006869 7.3e-261 904.4 956 52.1
A10p09630 Brassica napus HOM05D005963 ORTHO05D006869 1.2e-260 903.7 1009 51.1
BraA10t43044Z Brassica rapa HOM05D005963 ORTHO05D006869 1.2e-260 903.7 1009 51.1
BolC9t56999H Brassica oleracea HOM05D005963 ORTHO05D006869 1.4e-259 900.2 1015 50.8
CARHR264680 Cardamine hirsuta HOM05D005963 ORTHO05D006869 3.1e-259 899.0 1022 50.7
AT5G51800 Arabidopsis thaliana HOM05D005963 ORTHO05D006869 1.9e-256 889.8 976 51.3
A02p12120 Brassica napus HOM05D005963 ORTHO05D006869 2.4e-256 889.4 1013 50.1
BraA02t06276Z Brassica rapa HOM05D005963 ORTHO05D006869 5.4e-256 888.3 1013 50.0
BcaB08g35527 Brassica carinata HOM05D005963 ORTHO05D006869 2.3e-254 882.9 1021 49.7
BolC2t08150H Brassica oleracea HOM05D005963 ORTHO05D006869 2.3e-254 882.9 937 51.9
Gohir.A07G040200 Gossypium hirsutum HOM05D005963 ORTHO05D006869 2.3e-254 882.9 700 64.1
C02p20220 Brassica napus HOM05D005963 ORTHO05D006869 5.6e-253 878.2 936 51.5
BcaC04g20635 Brassica carinata HOM05D005963 ORTHO05D006869 1.9e-248 863.2 1015 49.2
EL10Ac3g05753 Beta vulgaris HOM05D005963 ORTHO05D006869 7.1e-248 861.3 853 53.7
EL10Ac7g16401 Beta vulgaris HOM05D005963 ORTHO05D006869 6.0e-239 831.6 972 50.0
BcaC03g14575 Brassica carinata HOM05D005963 ORTHO05D006869 3.3e-237 825.9 936 49.4
Ah.13g067680 Amaranthus hybridus HOM05D005963 ORTHO05D006869 1.3e-236 823.9 975 49.0
AUR62016071 Chenopodium quinoa HOM05D005963 ORTHO05D006869 2.0e-234 816.6 934 49.8
SEGI_31852 Sequoiadendron giganteum HOM05D005963 ORTHO05D006869 1.1e-232 810.8 835 50.2
AUR62021279 Chenopodium quinoa HOM05D005963 ORTHO05D006869 5.7e-221 771.9 770 53.6
Gohir.D07G044301 Gossypium hirsutum HOM05D005963 ORTHO05D006869 1.8e-214 750.4 539 67.7
Sc25g0000220 Simmondsia chinensis HOM05D005963 ORTHO05D006869 5.1e-214 748.8 1045 44.2
Cc02_g03640 Coffea canephora HOM05D005963 ORTHO05D006869 4.8e-212 742.3 542 65.7
PGSC0003DMG400007557 Solanum tuberosum HOM05D005963 ORTHO05D006869 4.5e-210 735.7 543 64.6
CDE08G0260 Ceratophyllum demersum HOM05D005963 ORTHO05D006869 1.4e-195 687.6 670 52.5
Hund04676 Selenicereus undatus HOM05D005963 ORTHO05D006869 9.4e-192 674.9 639 55.7
C09p41240 Brassica napus HOM05D005963 ORTHO05D006869 3.6e-151 540.0 698 48.1
Atru.chr1.580 Acer truncatum HOM05D005963 ORTHO05D006869 2.1e-146 524.2 391 66.0
ATR0661G117 Amborella trichopoda HOM05D005963 ORTHO05D006869 4.4e-133 479.9 478 50.8
Aa31LG3G8240 Aethionema arabicum HOM05D005963 ORTHO05D006869 3.8e-124 450.3 404 55.0
Glyma.16G201100 Glycine max HOM05D005963 ORTHO05D006869 1.2e-117 428.7 482 55.2
Atru.chr1.581 Acer truncatum HOM05D005963 ORTHO05D006869 1.2e-101 375.6 409 57.7
ATR0661G452 Amborella trichopoda HOM05D005963 ORTHO05D006869 2.7e-82 311.2 510 42.2
PGSC0003DMG400007558 Solanum tuberosum HOM05D005963 ORTHO05D006869 1.0e-68 266.2 325 44.3
Ca_05417_v3 Cicer arietinum L. HOM05D005963 ORTHO05D006869 1.5e-48 199.1 757 25.5
Pp3c2_90 Physcomitrium patens HOM05D005963 ORTHO05D006869 1.4e-46 192.6 474 31.0
Pp3c26_6160 Physcomitrium patens HOM05D005963 ORTHO05D006869 2.4e-46 191.8 458 31.4
Pp3c26_6250 Physcomitrium patens HOM05D005963 ORTHO05D006869 2.4e-46 191.8 458 31.4
Pp3c18_1570 Physcomitrium patens HOM05D005963 ORTHO05D006869 3.5e-45 188.0 385 33.2
MBI05_g12587_MAGBIO Magnolia biondii HOM05D005963 ORTHO05D006869 9.5e-43 179.9 353 33.1
Ca_30119_v3 Cicer arietinum L. HOM05D005963 ORTHO05D006869 1.6e-42 179.1 137 67.9
MBI05_g12586_MAGBIO Magnolia biondii HOM05D005963 ORTHO05D006869 1.4e-41 176.0 185 51.9
SMO174G0009 Selaginella moellendorffii HOM05D005963 ORTHO05D006869 4.0e-33 147.9 491 27.3
SMO276G0013 Selaginella moellendorffii HOM05D005963 ORTHO05D006869 7.8e-29 133.7 330 27.6
SMO358G0565 Selaginella moellendorffii HOM05D001046 ORTHO05D007174 1.2e-26 126.3 482 26.6
SMO116G0123 Selaginella moellendorffii HOM05D005963 ORTHO05D006869 4.0e-17 94.7 313 28.4
SMO195G0003 Selaginella moellendorffii HOM05D005963 ORTHO05D006869 4.0e-17 94.7 312 28.2
MBI05_g12588_MAGBIO Magnolia biondii HOM05D005963 ORTHO05D006869 3.2e-14 85.1 74 60.8
CDE08G0941 Ceratophyllum demersum HOM05D005963 ORTHO05D006869 1.9e-11 75.9 110 43.6
SMO268G0015 Selaginella moellendorffii HOM05D005963 ORTHO05D006869 9.6e-11 73.6 155 32.3
Cre02.g095117 Chlamydomonas reinhardtii HOM05D010267 ORTHO05D010759 2.1e-10 72.4 363 23.4
Cre01.g041800 Chlamydomonas reinhardtii HOM05D010267 ORTHO05D010759 1.2e-08 66.6 365 21.4
CBR_g38396 Chara braunii HOM05D002537 ORTHO05D002751 2.6e-08 65.5 167 29.3
Mapoly0001s0312 Marchantia polymorpha HOM05D029505 ORTHO05D006869 3.4e-08 65.1 142 28.9
AagrBONN_evm.TU.Sc2ySwM_117.2839 Anthoceros agrestis HOM05D002537 ORTHO05D006869 9.9e-08 63.5 165 28.5
Dinv24731 Davidia involucrata HOM05D005963 ORTHO05D006869 9.9e-08 63.5 54 63.0
CBR_g29752 Chara braunii HOM05D000601 ORTHO05D000407 2.9e-07 62.0 101 34.7
SMO367G0451 Selaginella moellendorffii HOM05D003725 ORTHO05D004294 3.8e-07 61.6 218 26.1
Pp3c3_17230 Physcomitrium patens HOM05D004805 ORTHO05D005756 8.4e-07 60.5 195 28.2
Oeu000477.1 Olea europaea HOM05D003725 ORTHO05D004294 1.1e-06 60.1 82 36.6
Oeu063117.1 Olea europaea HOM05D003725 ORTHO05D004294 1.1e-06 60.1 150 28.0
CiPaw.06G109100 Carya illinoinensis HOM05D002537 ORTHO05D002751 1.4e-06 59.7 182 25.3
Cre08.g380452 Chlamydomonas reinhardtii HOM05D010267 ORTHO05D010759 1.9e-06 59.3 309 23.0
Cre11.g467607 Chlamydomonas reinhardtii HOM05D010267 ORTHO05D010759 1.9e-06 59.3 265 23.8
SMO351G0173 Selaginella moellendorffii HOM05D002537 ORTHO05D002751 1.9e-06 59.3 132 29.5
CBR_g3612 Chara braunii HOM05D000601 ORTHO05D000407 2.4e-06 58.9 148 29.7
vmacro03493 Vaccinium macrocarpon HOM05D003725 ORTHO05D004294 2.4e-06 58.9 82 32.9
CBR_g78844 Chara braunii HOM05D000601 ORTHO05D000407 3.2e-06 58.5 183 27.3
CBR_g52699 Chara braunii HOM05D000601 ORTHO05D000407 4.2e-06 58.2 85 36.5
CBR_g78824 Chara braunii HOM05D000601 ORTHO05D000407 4.2e-06 58.2 84 35.7
Pp3c13_13680 Physcomitrium patens HOM05D004805 ORTHO05D005756 4.2e-06 58.2 153 28.1
Zm00001eb421380 Zea mays HOM05D002537 ORTHO05D002751 4.2e-06 58.2 120 31.7
Lsat_1_v5_gn_5_10240 Lactuca sativa HOM05D002537 ORTHO05D002751 5.4e-06 57.8 94 31.9
Pp3c12_22800 Physcomitrium patens HOM05D002537 ORTHO05D002751 5.4e-06 57.8 181 24.9
CBR_g31860 Chara braunii HOM05D000601 ORTHO05D000407 7.1e-06 57.4 152 28.3
CBR_g34818 Chara braunii HOM05D000601 ORTHO05D000407 7.1e-06 57.4 152 27.6
CBR_g53702 Chara braunii HOM05D000601 ORTHO05D000407 7.1e-06 57.4 97 37.1
Cc09_g06700 Coffea canephora HOM05D003725 ORTHO05D004294 7.1e-06 57.4 141 24.1
TWI75G0641 Tripterygium wilfordii HOM05D002537 ORTHO05D002751 7.1e-06 57.4 151 28.5
CBR_g70975 Chara braunii HOM05D000601 ORTHO05D000407 9.3e-06 57.0 84 35.7
Mapoly0056s0059 Marchantia polymorpha HOM05D002537 ORTHO05D002751 9.3e-06 57.0 144 26.4
Pp3c20_23380 Physcomitrium patens HOM05D004805 ORTHO05D005756 9.3e-06 57.0 161 28.6
SEGI_24808 Sequoiadendron giganteum HOM05D003725 ORTHO05D004294 9.3e-06 57.0 143 30.1
Zm00001eb242030 Zea mays HOM05D002537 ORTHO05D002751 9.3e-06 57.0 73 35.6


User provided reference genes

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