Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FvH4_7g15320 Fragaria vesca HOM05D004687 ORTHO05D006002 0.0e+00 1144.4 595 100.0
FAN06G2065 Fragaria x ananassa HOM05D004687 ORTHO05D006002 0.0e+00 1144.4 595 100.0
FAN06G2774 Fragaria x ananassa HOM05D004687 ORTHO05D006002 0.0e+00 1140.2 595 99.7
FAN10G0227 Fragaria x ananassa HOM05D004687 ORTHO05D006002 0.0e+00 1099.0 595 96.1
FAN10G4173 Fragaria x ananassa HOM05D004687 ORTHO05D006002 1.1e-291 1006.1 595 90.1
RcHm_v2.0_Chr1g0357651 Rosa chinensis HOM05D004687 ORTHO05D006002 1.0e-289 999.6 595 88.4
FAN01G0098 Fragaria x ananassa HOM05D004687 ORTHO05D006002 8.5e-252 873.6 492 94.9
FAN03G2011 Fragaria x ananassa HOM05D004687 ORTHO05D006002 2.9e-215 752.3 416 96.2
Prupe.2G177100 Prunus persica HOM05D004687 ORTHO05D006002 1.2e-165 587.4 603 57.5
MD01G1070600 Malus domestica HOM05D004687 ORTHO05D006002 7.7e-144 515.0 597 52.4
CiPaw.02G034500 Carya illinoinensis HOM05D004687 ORTHO05D006002 3.7e-138 496.1 611 51.9
CANSAT56G3669 Cannabis sativa HOM05D004687 ORTHO05D006002 4.0e-132 476.1 603 50.1
Cfa003875 Carpinus fangiana HOM05D004687 ORTHO05D006002 3.6e-125 453.0 576 51.9
Dinv32519 Davidia involucrata HOM05D004687 ORTHO05D006002 2.3e-124 450.3 610 47.5
QL04p055402 Quercus lobata HOM05D004687 ORTHO05D006002 1.2e-123 448.0 710 45.1
Atru.chr5.577 Acer truncatum HOM05D004687 ORTHO05D006002 1.3e-122 444.5 600 47.8
Atru.chr5.560 Acer truncatum HOM05D004687 ORTHO05D006002 4.9e-122 442.6 600 47.8
TAR374G1208 Trochodendron aralioides HOM05D004687 ORTHO05D006002 1.4e-121 441.0 621 46.4
arahy.Tifrunner.gnm1.ann1.X9JZY0 Arachis hypogaea HOM05D004687 ORTHO05D006002 3.0e-116 423.3 599 45.7
arahy.Tifrunner.gnm1.ann1.PSKN5N Arachis hypogaea HOM05D004687 ORTHO05D006002 3.4e-115 419.9 599 45.9
GSVIVG01026963001 Vitis vinifera HOM05D004687 ORTHO05D006002 5.9e-112 409.1 608 45.1
Lj7A508T42 Lonicera japonica HOM05D004687 ORTHO05D006002 1.7e-111 407.5 605 45.3
Ciclev10019565m.g Citrus clementina HOM05D004687 ORTHO05D006002 1.5e-110 404.4 606 44.1
CSS0026327 Camellia sinensis var. sinensis HOM05D004687 ORTHO05D006002 7.3e-110 402.1 603 44.9
Thecc.01G352900 Theobroma cacao HOM05D004687 ORTHO05D006002 1.2e-107 394.8 598 44.3
Glyma.16G032000 Glycine max HOM05D004687 ORTHO05D006002 2.6e-107 393.7 600 45.2
Cpa.g.sc184.31 Carica papaya HOM05D004687 ORTHO05D006002 7.5e-107 392.1 599 44.9
VMungo0331G0070 Vigna mungo HOM05D004687 ORTHO05D006002 2.4e-105 387.1 597 45.4
Lj3g0008911 Lotus japonicus HOM05D004687 ORTHO05D006002 3.2e-105 386.7 604 43.7
Manes.01G252600 Manihot esculenta HOM05D004687 ORTHO05D006002 9.2e-105 385.2 602 44.4
Sabra14G0065300 Salix brachista HOM05D004687 ORTHO05D006002 1.2e-104 384.8 579 43.0
Cc02_g38540 Coffea canephora HOM05D004687 ORTHO05D006002 2.7e-104 383.6 608 43.4
Nitab4.5_0000915g0140 Nicotiana tabacum HOM05D004687 ORTHO05D006002 1.3e-103 381.3 601 42.9
Phvul.010G104100 Phaseolus vulgaris HOM05D004687 ORTHO05D006002 3.0e-103 380.2 599 44.6
Lalb_Chr10g0096671 Lupinus albus HOM05D004687 ORTHO05D006002 2.5e-102 377.1 600 42.0
ClCG06G003410 Citrullus lanatus HOM05D004687 ORTHO05D006002 3.3e-102 376.7 603 43.6
Nn1g01677 Nelumbo nucifera HOM05D004687 ORTHO05D006002 4.3e-102 376.3 596 43.3
Solyc01g095090.3 Solanum lycopersicum HOM05D004687 ORTHO05D006002 1.1e-100 371.7 605 43.0
TWI14G1112 Tripterygium wilfordii HOM05D004687 ORTHO05D006002 2.3e-100 370.5 610 43.6
COL.COLO4_12774 Corchorus olitorius HOM05D004687 ORTHO05D006002 5.2e-100 369.4 595 41.5
PGR031G1931 Punica granatum HOM05D004687 ORTHO05D006002 1.5e-99 367.9 597 42.7
Peaxi162Scf00020g01410 Petunia axillaris HOM05D004687 ORTHO05D006002 4.4e-99 366.3 616 43.2
Sed0003221 Sechium edule HOM05D004687 ORTHO05D006002 9.8e-99 365.2 604 41.9
Sc01g0003240 Simmondsia chinensis HOM05D004687 ORTHO05D006002 1.3e-98 364.8 611 42.2
Aqoxy7G00187 Aquilegia oxysepala HOM05D004687 ORTHO05D006002 2.4e-97 360.5 627 39.9
Duzib138G0011 Durio zibethinus HOM05D004687 ORTHO05D006002 2.1e-96 357.5 597 42.0
Gohir.D11G097000 Gossypium hirsutum HOM05D004687 ORTHO05D006002 2.1e-96 357.5 596 41.3
Gorai.007G103300 Gossypium raimondii HOM05D004687 ORTHO05D006002 2.1e-96 357.5 594 41.6
Eucgr.D02323 Eucalyptus grandis HOM05D004687 ORTHO05D006002 2.7e-96 357.1 600 42.7
Medtr8g028580 Medicago truncatula HOM05D004687 ORTHO05D006002 6.0e-96 355.9 598 41.8
Potri.014G089800 Populus trichocarpa HOM05D004687 ORTHO05D006002 1.7e-95 354.4 560 42.5
MSTRG.20861 Avicennia marina HOM05D004687 ORTHO05D006002 2.3e-95 354.0 616 41.2
PGSC0003DMG400000194 Solanum tuberosum HOM05D004687 ORTHO05D006002 1.1e-94 351.7 650 39.8
Rhsim07G0010800 Rhododendron simsii HOM05D004687 ORTHO05D006002 1.5e-94 351.3 628 39.0
Psat4g212240 Pisum sativum HOM05D004687 ORTHO05D006002 1.9e-94 350.9 597 42.4
Oeu063679.1 Olea europaea HOM05D004687 ORTHO05D006002 2.5e-94 350.5 613 41.6
Migut.B01796 Erythranthe guttata HOM05D004687 ORTHO05D006002 2.3e-92 344.0 605 40.5
Prupe.2G177000 Prunus persica HOM05D004687 ORTHO05D006002 6.8e-92 342.4 528 44.3
Haze_15561 Corylus avellana HOM05D004687 ORTHO05D006002 1.2e-91 341.7 558 45.3
Nitab4.5_0009238g0010 Nicotiana tabacum HOM05D004687 ORTHO05D006002 4.1e-89 333.2 601 40.4
Ca_03498_v3 Cicer arietinum L. HOM05D004687 ORTHO05D006002 2.1e-88 330.9 601 41.1
MBI04_g26968_MAGBIO Magnolia biondii HOM05D004687 ORTHO05D006002 1.0e-87 328.6 603 41.0
PSO478G3840 Papaver somniferum HOM05D004687 ORTHO05D006002 2.3e-87 327.4 620 39.5
PSO266G0021 Papaver somniferum HOM05D004687 ORTHO05D006002 6.2e-85 319.3 628 38.1
MELO3C021180.2 Cucumis melo HOM05D004687 ORTHO05D006002 4.0e-84 316.6 619 38.9
DCAR_006947 Daucus carota HOM05D004687 ORTHO05D006002 6.4e-82 309.3 574 40.6
Peaxi162Scf00403g00830 Petunia axillaris HOM05D004687 ORTHO05D006002 2.4e-81 307.4 528 41.7
Actinidia20159 Actinidia chinensis HOM05D004687 ORTHO05D006002 6.0e-80 302.8 605 38.0
Hund27243 Selenicereus undatus HOM05D004687 ORTHO05D006002 6.0e-80 302.8 597 39.2
CSS0041346 Camellia sinensis var. sinensis HOM05D004687 ORTHO05D006002 5.1e-79 299.7 498 42.4
ECA236G1242 Erigeron canadensis HOM05D004687 ORTHO05D006002 8.7e-79 298.9 594 35.9
THA.LOC104817038 Tarenaya hassleriana HOM05D004687 ORTHO05D006002 8.7e-79 298.9 593 38.8
Lsat_1_v5_gn_7_3881 Lactuca sativa HOM05D004687 ORTHO05D006002 3.6e-77 293.5 601 36.8
Sopen05g028410 Solanum pennellii HOM05D004687 ORTHO05D006002 4.8e-77 293.1 542 39.7
Solyc05g050020.3 Solanum lycopersicum HOM05D004687 ORTHO05D006002 1.1e-76 292.0 531 40.1
PGSC0003DMG400033881 Solanum tuberosum HOM05D004687 ORTHO05D006002 4.0e-76 290.0 538 38.5
CSS0036615 Camellia sinensis var. sinensis HOM05D004687 ORTHO05D006002 2.6e-75 287.3 554 38.8
TPR.G28289 Trifolium pratense HOM05D004687 ORTHO05D006002 2.6e-75 287.3 573 40.1
MD01G1070500 Malus domestica HOM05D004687 ORTHO05D006002 1.2e-72 278.5 530 39.8
SalBow3G3455 Salvia bowleyana HOM05D004687 ORTHO05D006002 2.1e-72 277.7 664 35.4
BcaB01g02150 Brassica carinata HOM05D004687 ORTHO05D006002 5.1e-71 273.1 594 37.0
Thhalv10029490m.g Eutrema salsugineum HOM05D004687 ORTHO05D006002 1.1e-70 271.9 608 37.3
Aa31LG5G750 Aethionema arabicum HOM05D004687 ORTHO05D006002 5.6e-70 269.6 598 35.1
AL6G52120 Arabidopsis lyrata HOM05D004687 ORTHO05D006002 9.6e-70 268.9 600 35.3
BolC3t16169H Brassica oleracea HOM05D004687 ORTHO05D006002 1.6e-69 268.1 594 35.7
A03p31950 Brassica napus HOM05D004687 ORTHO05D006002 2.1e-69 267.7 594 35.2
ATR0661G462 Amborella trichopoda HOM05D004687 ORTHO05D006002 2.8e-69 267.3 620 34.0
BcaC01g06853 Brassica carinata HOM05D004687 ORTHO05D006002 2.8e-69 267.3 594 36.2
C03p38970 Brassica napus HOM05D004687 ORTHO05D006002 3.6e-69 266.9 594 36.2
BraA03t12367Z Brassica rapa HOM05D004687 ORTHO05D006002 3.6e-69 266.9 594 35.5
BraA09t35739Z Brassica rapa HOM05D004687 ORTHO05D006002 3.6e-69 266.9 592 36.0
Sp6g00860 Schrenkiella parvula HOM05D004687 ORTHO05D006002 4.8e-69 266.5 599 35.7
SGA_v2.0_scaffold95G28807 Striga asiatica HOM05D004687 ORTHO05D006002 1.4e-68 265.0 627 34.9
vmacro13232 Vaccinium macrocarpon HOM05D004687 ORTHO05D006002 1.8e-68 264.6 328 46.3
Carub.0006s3633 Capsella rubella HOM05D004687 ORTHO05D006002 2.4e-68 264.2 599 35.9
A09p00090 Brassica napus HOM05D004687 ORTHO05D006002 5.8e-67 259.6 602 34.9
AT4G01270 Arabidopsis thaliana HOM05D004687 ORTHO05D006002 6.4e-66 256.1 606 35.5
BcaC04g24137 Brassica carinata HOM05D004687 ORTHO05D006002 8.4e-66 255.8 599 35.4
C09p00700 Brassica napus HOM05D004687 ORTHO05D006002 8.4e-66 255.8 599 35.4
BolC9t53004H Brassica oleracea HOM05D004687 ORTHO05D006002 8.4e-66 255.8 599 35.4
Ah.05g180180 Amaranthus hybridus HOM05D004687 ORTHO05D006002 1.9e-65 254.6 300 50.3
CsaV3_6G000900 Cucumis sativus L. HOM05D004687 ORTHO05D006002 5.5e-65 253.1 514 38.5
SEGI_33633 Sequoiadendron giganteum HOM05D004687 ORTHO05D006002 5.5e-65 253.1 616 34.9
HanXRQChr06g0170331 Helianthus annuus HOM05D004687 ORTHO05D006002 7.1e-65 252.7 593 34.6
CARHR249040 Cardamine hirsuta HOM05D004687 ORTHO05D006002 9.3e-65 252.3 606 35.1
RcHm_v2.0_Chr2g0111671 Rosa chinensis HOM05D004687 ORTHO05D006002 6.0e-64 249.6 619 35.1
AUR62004410 Chenopodium quinoa HOM05D004687 ORTHO05D006002 1.8e-63 248.1 600 34.5
unitig_699.g19806 Utricularia gibba HOM05D004687 ORTHO05D006002 5.6e-62 243.0 633 32.7
Lalb_Chr17g0339021 Lupinus albus HOM05D004687 ORTHO05D006002 6.2e-61 239.6 227 57.7
HanXRQChr04g0120761 Helianthus annuus HOM05D004687 ORTHO05D006002 3.1e-60 237.3 598 32.8
CSS0021310 Camellia sinensis var. sinensis HOM05D004687 ORTHO05D006002 1.2e-59 235.3 554 35.2
Zm00001eb416420 Zea mays HOM05D004687 ORTHO05D006002 3.8e-58 230.3 621 31.6
FvH4_1g19860 Fragaria vesca HOM05D004687 ORTHO05D006002 4.6e-56 223.4 621 34.0
FAN28G2978 Fragaria x ananassa HOM05D004687 ORTHO05D006002 3.9e-55 220.3 619 33.6
FAN19G0767 Fragaria x ananassa HOM05D004687 ORTHO05D006002 6.7e-55 219.5 621 33.8
Gohir.A11G092200 Gossypium hirsutum HOM05D004687 ORTHO05D006002 9.6e-54 215.7 453 37.1
FAN26G2006 Fragaria x ananassa HOM05D004687 ORTHO05D006002 4.8e-53 213.4 620 33.2
BcaB01g02289 Brassica carinata HOM05D004687 ORTHO05D006002 2.0e-51 208.0 601 31.9
Os08g0151700 Oryza sativa ssp. japonica HOM05D004687 ORTHO05D006002 2.6e-51 207.6 627 30.8
EL10Ac1g00358 Beta vulgaris HOM05D004687 ORTHO05D006002 2.3e-47 194.5 582 32.5
AUR62022616 Chenopodium quinoa HOM05D004687 ORTHO05D006002 2.2e-45 188.0 513 34.9
Nitab4.5_0002262g0080 Nicotiana tabacum HOM05D004687 ORTHO05D006002 1.1e-41 175.6 327 39.4
FAN23G1626 Fragaria x ananassa HOM05D004687 ORTHO05D006002 2.7e-40 171.0 548 32.1
SMO147G0044 Selaginella moellendorffii HOM05D004687 ORTHO05D006002 1.1e-38 165.6 323 34.4
Potri.002G164000 Populus trichocarpa HOM05D004687 ORTHO05D006002 2.0e-38 164.9 377 33.4
Pp3c23_12760 Physcomitrium patens HOM05D004687 ORTHO05D006002 1.1e-36 159.1 648 27.9
Lalb_Chr17g0339031 Lupinus albus HOM05D004687 ORTHO05D006002 3.4e-35 154.1 315 36.8
SGA_v2.0_scaffold95G28804 Striga asiatica HOM05D004687 ORTHO05D006002 6.5e-34 149.8 297 37.0
SHI13366 Sapria himalayana HOM05D004687 ORTHO05D006002 5.2e-31 140.2 163 49.1
Nitab4.5_0003779g0080 Nicotiana tabacum HOM05D004687 ORTHO05D006002 3.3e-30 137.5 161 49.1
GSVIVG01013521001 Vitis vinifera HOM05D004687 ORTHO05D006002 2.2e-29 134.8 123 57.7
MD01G1071100 Malus domestica HOM05D004687 ORTHO05D006002 8.2e-29 132.9 94 69.1
CDE11G0743 Ceratophyllum demersum HOM05D002440 ORTHO05D002576 5.9e-27 126.7 447 30.2
vmacro13233 Vaccinium macrocarpon HOM05D004687 ORTHO05D006002 7.7e-27 126.3 179 44.1
QL06p033484 Quercus lobata HOM05D004687 ORTHO05D006002 1.6e-24 118.6 114 53.5
Actinidia20138 Actinidia chinensis HOM05D004687 ORTHO05D006002 6.1e-24 116.7 120 51.7
Sopen01g038880 Solanum pennellii HOM05D004687 ORTHO05D006002 8.0e-24 116.3 321 34.0
Actinidia10067 Actinidia chinensis HOM05D004687 ORTHO05D006002 3.3e-22 110.9 387 31.0
SHI13367 Sapria himalayana HOM05D004687 ORTHO05D006002 6.3e-21 106.7 432 27.8
COL.COLO4_21921 Corchorus olitorius HOM05D004687 ORTHO05D006002 1.3e-18 99.0 97 49.5
ATR0804G028 Amborella trichopoda HOM05D004687 ORTHO05D006002 2.5e-17 94.7 137 43.8
CBR_g45680 Chara braunii HOM05D004687 ORTHO05D006002 3.2e-17 94.4 298 27.5
PSO541G1518 Papaver somniferum HOM05D004687 ORTHO05D006002 2.6e-14 84.7 141 35.5
SGA_v2.0_scaffold95G28808 Striga asiatica HOM05D005821 ORTHO05D006649 2.8e-13 81.3 107 43.9
Aa31sc194G60 Aethionema arabicum HOM05D004687 ORTHO05D006002 1.4e-12 79.0 150 36.7
Mapoly0091s0017 Marchantia polymorpha HOM05D004687 ORTHO05D006002 7.0e-12 76.6 309 22.3
Ca_03421_v3 Cicer arietinum L. HOM05D004687 ORTHO05D006002 4.5e-11 73.9 132 39.4
RcHm_v2.0_Chr5g0025761 Rosa chinensis HOM05D006316 ORTHO05D008032 4.0e-07 60.8 32 87.5


User provided reference genes

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