Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN06G2002 Fragaria x ananassa HOM05D006960 ORTHO05D008699 1.2e-138 496.5 260 100.0
FAN06G3195 Fragaria x ananassa HOM05D006960 ORTHO05D008699 6.2e-122 441.0 233 99.1
FAN10G0984 Fragaria x ananassa HOM05D006960 ORTHO05D008699 3.1e-121 438.7 238 96.6
FvH4_7g16680 Fragaria vesca HOM05D006960 ORTHO05D008699 1.2e-120 436.8 233 98.3
FAN01G3090 Fragaria x ananassa HOM05D006960 ORTHO05D008699 5.4e-118 427.9 233 96.1
FAN10G4095 Fragaria x ananassa HOM05D006960 ORTHO05D008699 2.3e-116 422.5 228 97.4
RcHm_v2.0_Chr1g0359831 Rosa chinensis HOM05D006960 ORTHO05D008699 4.6e-109 398.3 234 91.0
Prupe.2G189500 Prunus persica HOM05D006960 ORTHO05D008699 1.2e-93 347.1 233 80.3
MD07G1150800 Malus domestica HOM05D006960 ORTHO05D008699 2.8e-90 335.9 233 78.1
Haze_15666 Corylus avellana HOM05D000451 ORTHO05D000351 6.4e-87 324.7 230 74.8
CANSAT56G1276 Cannabis sativa HOM05D006960 ORTHO05D008699 1.9e-86 323.2 233 74.2
Ciclev10022060m.g Citrus clementina HOM05D006960 ORTHO05D008699 3.5e-85 318.9 233 70.8
QL04p060559 Quercus lobata HOM05D006960 ORTHO05D008699 4.3e-83 312.0 233 72.1
CSS0036785 Camellia sinensis var. sinensis HOM05D006960 ORTHO05D008699 4.8e-82 308.5 233 71.2
Atru.chr5.678 Acer truncatum HOM05D006960 ORTHO05D008699 6.2e-82 308.1 233 71.7
CSS0028122 Camellia sinensis var. sinensis HOM05D006960 ORTHO05D008699 6.2e-82 308.1 233 71.7
ClCG09G009460 Citrullus lanatus HOM05D006960 ORTHO05D008699 3.1e-81 305.8 233 69.5
Gohir.D11G102000 Gossypium hirsutum HOM05D006960 ORTHO05D008699 1.2e-80 303.9 253 66.0
Gorai.007G109000 Gossypium raimondii HOM05D006960 ORTHO05D008699 3.4e-80 302.4 253 65.6
TAR629G1073 Trochodendron aralioides HOM05D006960 ORTHO05D008699 1.3e-79 300.4 233 69.1
Thecc.01G341400 Theobroma cacao HOM05D006960 ORTHO05D008699 1.7e-79 300.1 253 66.8
COL.COLO4_21448 Corchorus olitorius HOM05D006960 ORTHO05D008699 2.2e-79 299.7 257 65.0
MELO3C024139.2 Cucumis melo HOM05D006960 ORTHO05D008699 3.8e-79 298.9 233 68.7
Gohir.A11G097200 Gossypium hirsutum HOM05D006960 ORTHO05D008699 6.5e-79 298.1 253 64.8
Sed0021558 Sechium edule HOM05D006960 ORTHO05D008699 1.4e-78 297.0 233 67.0
Lalb_Chr06g0163941 Lupinus albus HOM05D006960 ORTHO05D008699 2.5e-78 296.2 229 70.3
vmacro12673 Vaccinium macrocarpon HOM05D006960 ORTHO05D008699 5.5e-78 295.0 233 68.2
Potri.014G099500 Populus trichocarpa HOM05D006960 ORTHO05D008699 1.6e-77 293.5 250 64.4
TWI14G0597 Tripterygium wilfordii HOM05D006960 ORTHO05D008699 2.7e-77 292.7 253 63.2
Manes.05G022300 Manihot esculenta HOM05D006960 ORTHO05D008699 5.1e-76 288.5 254 61.8
Rhsim04G0222700 Rhododendron simsii HOM05D006960 ORTHO05D008699 2.5e-75 286.2 233 67.4
GSVIVG01027159001 Vitis vinifera HOM05D006960 ORTHO05D008699 2.5e-75 286.2 225 70.7
Actinidia20248 Actinidia chinensis HOM05D000567 ORTHO05D001981 3.3e-75 285.8 214 69.6
Rhsim01G0172900 Rhododendron simsii HOM05D006960 ORTHO05D008699 3.3e-75 285.8 233 67.4
Eucgr.E00049 Eucalyptus grandis HOM05D006960 ORTHO05D008699 7.4e-75 284.6 231 67.1
DCAR_021504 Daucus carota HOM05D006960 ORTHO05D008699 2.8e-74 282.7 235 66.8
EL10Ac1g00259 Beta vulgaris HOM05D006960 ORTHO05D008699 4.8e-74 282.0 232 65.1
ECA236G0577 Erigeron canadensis HOM05D006960 ORTHO05D008699 4.8e-74 282.0 233 67.4
Sc01g0002630 Simmondsia chinensis HOM05D000016 ORTHO05D007083 4.8e-74 282.0 236 63.6
MSTRG.17349 Avicennia marina HOM05D006960 ORTHO05D008699 1.1e-73 280.8 234 65.0
Cpa.g.sc46.111 Carica papaya HOM05D006960 ORTHO05D008699 3.1e-73 279.3 236 64.8
Glyma.20G102700 Glycine max HOM05D006960 ORTHO05D008699 4.1e-73 278.9 229 66.8
AUR62004502 Chenopodium quinoa HOM05D006960 ORTHO05D008699 6.9e-73 278.1 233 62.7
Ca_11259_v3 Cicer arietinum L. HOM05D006960 ORTHO05D008699 1.5e-72 276.9 229 67.2
Lj5g0001318 Lotus japonicus HOM05D006960 ORTHO05D008699 1.5e-72 276.9 229 65.9
Psat6g234040 Pisum sativum HOM05D006960 ORTHO05D008699 1.5e-72 276.9 229 67.2
PGR142G3971 Punica granatum HOM05D006960 ORTHO05D008699 1.5e-72 276.9 239 65.7
Cc01_g12480 Coffea canephora HOM05D006960 ORTHO05D008699 3.4e-72 275.8 237 65.4
Aqoxy6G00316 Aquilegia oxysepala HOM05D006960 ORTHO05D008699 1.3e-71 273.9 233 63.9
Migut.B01880 Erythranthe guttata HOM05D006960 ORTHO05D008699 1.3e-71 273.9 237 63.7
Nitab4.5_0004506g0020 Nicotiana tabacum HOM05D006960 ORTHO05D008699 1.3e-71 273.9 236 66.5
BraA09t42243Z Brassica rapa HOM05D006960 ORTHO05D008699 1.7e-71 273.5 242 63.2
PGSC0003DMG400007011 Solanum tuberosum HOM05D006960 ORTHO05D008699 2.9e-71 272.7 237 65.4
C08p53630 Brassica napus HOM05D006960 ORTHO05D008699 3.8e-71 272.3 238 63.9
BolC8t52877H Brassica oleracea HOM05D006960 ORTHO05D008699 3.8e-71 272.3 246 62.6
Lsat_1_v5_gn_8_13101 Lactuca sativa HOM05D006960 ORTHO05D008699 3.8e-71 272.3 237 65.0
A09p69060 Brassica napus HOM05D006960 ORTHO05D008699 5.0e-71 271.9 238 63.9
Solyc05g050570.3 Solanum lycopersicum HOM05D006960 ORTHO05D008699 8.5e-71 271.2 231 66.7
Nitab4.5_0000258g0220 Nicotiana tabacum HOM05D006960 ORTHO05D008699 1.1e-70 270.8 236 66.1
Sopen05g029010 Solanum pennellii HOM05D006960 ORTHO05D008699 1.9e-70 270.0 237 65.4
CAN.G1178.29 Capsicum annuum HOM05D006960 ORTHO05D008699 3.2e-70 269.2 237 64.1
Medtr1g114590 Medicago truncatula HOM05D006960 ORTHO05D008699 3.2e-70 269.2 235 65.1
Thhalv10008544m.g Eutrema salsugineum HOM05D006960 ORTHO05D008699 4.2e-70 268.9 252 59.9
Sp1g01000 Schrenkiella parvula HOM05D006960 ORTHO05D008699 4.2e-70 268.9 249 61.0
VMungo0720G2201 Vigna mungo HOM05D006960 ORTHO05D008699 4.2e-70 268.9 229 65.1
Phvul.007G014400 Phaseolus vulgaris HOM05D006960 ORTHO05D008699 5.5e-70 268.5 229 65.9
Medtr5g015740 Medicago truncatula HOM05D006960 ORTHO05D008699 7.2e-70 268.1 235 65.1
Oeu007886.1 Olea europaea HOM05D006960 ORTHO05D008699 7.9e-69 264.6 239 61.9
Oeu014974.1 Olea europaea HOM05D006960 ORTHO05D008699 7.9e-69 264.6 239 61.9
HanXRQChr06g0170731 Helianthus annuus HOM05D006960 ORTHO05D008699 1.0e-68 264.2 224 64.7
Dinv22299 Davidia involucrata HOM05D006960 ORTHO05D008699 2.3e-68 263.1 218 67.4
PSO063G6262 Papaver somniferum HOM05D006960 ORTHO05D008699 2.3e-68 263.1 235 60.4
Carub.0001s0093 Capsella rubella HOM05D006960 ORTHO05D008699 3.0e-68 262.7 262 58.0
MBI06_g44795_MAGBIO Magnolia biondii HOM05D006960 ORTHO05D008699 3.9e-68 262.3 235 61.3
AT1G01290 Arabidopsis thaliana HOM05D006960 ORTHO05D008699 4.3e-67 258.8 264 56.8
CARHR001180 Cardamine hirsuta HOM05D006960 ORTHO05D008699 5.7e-67 258.5 254 58.7
Sabra14G0073000 Salix brachista HOM05D006960 ORTHO05D008699 7.4e-67 258.1 235 62.6
TPR.G4075 Trifolium pratense HOM05D006960 ORTHO05D008699 1.3e-66 257.3 217 66.8
Peaxi162Scf00716g00022 Petunia axillaris HOM05D006960 ORTHO05D008699 4.8e-66 255.4 201 68.2
SalBow3G0783 Salvia bowleyana HOM05D006960 ORTHO05D008699 3.1e-65 252.7 236 60.6
Aqoxy3G01066 Aquilegia oxysepala HOM05D006960 ORTHO05D008699 5.3e-65 251.9 198 65.7
PSO170G4910 Papaver somniferum HOM05D006960 ORTHO05D008699 6.9e-65 251.5 227 60.8
Nn8g41032 Nelumbo nucifera HOM05D006960 ORTHO05D008699 9.1e-65 251.1 201 66.7
Aa31LG5G970 Aethionema arabicum HOM05D000451 ORTHO05D000351 2.6e-64 249.6 208 66.8
AL1G11170 Arabidopsis lyrata HOM05D006960 ORTHO05D008699 3.4e-64 249.2 180 73.9
CAN.G1385.4 Capsicum annuum HOM05D006960 ORTHO05D008699 1.3e-63 247.3 198 67.7
SGA_v2.0_scaffold22G09984 Striga asiatica HOM05D006960 ORTHO05D008699 3.8e-63 245.7 236 61.0
Hund16718 Selenicereus undatus HOM05D006960 ORTHO05D008699 5.5e-62 241.9 218 59.6
Zm00001eb080710 Zea mays HOM05D006960 ORTHO05D008699 1.8e-60 236.9 201 61.7
Os04g0460500 Oryza sativa ssp. japonica HOM05D006960 ORTHO05D008699 2.3e-60 236.5 201 62.7
arahy.Tifrunner.gnm1.ann1.CCVT8N Arachis hypogaea HOM05D006960 ORTHO05D008699 3.3e-59 232.6 229 60.7
arahy.Tifrunner.gnm1.ann1.EW69V8 Arachis hypogaea HOM05D006471 ORTHO05D008157 9.7e-59 231.1 178 69.7
unitig_899.g14796 Utricularia gibba HOM05D006960 ORTHO05D008699 1.7e-55 220.3 202 58.9
ATR0602G026 Amborella trichopoda HOM05D006960 ORTHO05D008699 2.1e-53 213.4 196 57.7
HPP92_002925 Vanilla planifolia HOM05D006960 ORTHO05D008699 2.1e-53 213.4 156 69.2
Mapoly0053s0024 Marchantia polymorpha HOM05D006960 ORTHO05D008699 9.1e-49 198.0 237 51.5
AUR62014969 Chenopodium quinoa HOM05D006960 ORTHO05D008699 1.6e-48 197.2 239 47.7
SMO351G0341 Selaginella moellendorffii HOM05D006960 ORTHO05D008699 4.5e-48 195.7 195 56.9
Pp3c20_11370 Physcomitrium patens HOM05D006960 ORTHO05D008699 1.1e-46 191.0 235 47.7
CsaV3_7G025390 Cucumis sativus L. HOM05D006960 ORTHO05D008699 2.0e-43 180.3 162 61.1
FAN03G0019 Fragaria x ananassa HOM05D006960 ORTHO05D008699 2.6e-43 179.9 238 49.6
MCO01G113 Micromonas commoda HOM05D006960 ORTHO05D008699 1.4e-41 174.1 176 55.7
CDE10G0236 Ceratophyllum demersum HOM05D006960 ORTHO05D008699 2.7e-40 169.9 240 46.2
AUR62023452 Chenopodium quinoa HOM05D000040 ORTHO05D000759 1.0e-39 167.9 210 47.6
Cre08.g361050 Chlamydomonas reinhardtii HOM05D006960 ORTHO05D008699 5.5e-38 162.2 196 49.5
CBR_g23014 Chara braunii HOM05D006960 ORTHO05D008699 2.7e-37 159.8 155 54.8
HPP92_028636 Vanilla planifolia HOM05D006960 ORTHO05D008699 2.8e-34 149.8 230 42.6
VMungo0964G0001 Vigna mungo HOM05D006960 ORTHO05D008699 9.1e-33 144.8 155 50.3
CDE10G0916 Ceratophyllum demersum HOM05D000108 ORTHO05D001781 2.7e-32 143.3 112 65.2
CiPaw.01G076800 Carya illinoinensis HOM05D006960 ORTHO05D008699 7.0e-25 118.6 110 60.9
TAR636G2744 Trochodendron aralioides HOM05D006960 ORTHO05D008699 1.6e-24 117.5 104 57.7
Cpa.g.sc96.27 Carica papaya HOM05D006960 ORTHO05D008699 1.9e-22 110.5 156 44.2
Cfa022703 Carpinus fangiana HOM05D006960 ORTHO05D008699 7.3e-22 108.6 162 43.2
Haze_27006 Corylus avellana HOM05D006202 ORTHO05D008699 1.2e-16 91.3 115 40.9
PRCOL_00000953 Prasinoderma coloniale HOM05D006960 ORTHO05D008699 3.3e-14 83.2 218 30.7
Gohir.D08G121100 Gossypium hirsutum HOM05D006960 ORTHO05D008699 4.6e-08 62.8 63 58.7
Gohir.D10G162832 Gossypium hirsutum HOM05D006960 ORTHO05D008699 4.6e-08 62.8 63 58.7
Gorai.002G097600 Gossypium raimondii HOM05D006960 ORTHO05D018836 6.0e-08 62.4 63 58.7
Gorai.011G078500 Gossypium raimondii HOM05D006960 ORTHO05D008699 1.0e-07 61.6 63 55.6
Gohir.D05G312133 Gossypium hirsutum HOM05D006960 ORTHO05D008699 1.7e-07 60.8 63 57.1
Medtr5g015730 Medicago truncatula HOM05D006960 ORTHO05D008699 6.6e-07 58.9 35 77.1


User provided reference genes

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