Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FvH4_7g13640 Fragaria vesca HOM05D000092 ORTHO05D000042 2.2e-41 171.8 82 100.0
FAN06G1975 Fragaria x ananassa HOM05D000092 ORTHO05D035911 2.2e-41 171.8 82 100.0
FAN06G3441 Fragaria x ananassa HOM05D004612 ORTHO05D004940 6.4e-41 170.2 82 98.8
FAN03G0673 Fragaria x ananassa HOM05D000092 ORTHO05D000042 1.1e-35 152.9 76 97.4
RcHm_v2.0_Chr1g0353711 Rosa chinensis HOM05D000092 ORTHO05D000042 1.1e-35 152.9 80 90.0
FAN01G1921 Fragaria x ananassa HOM05D000092 ORTHO05D004940 9.0e-35 149.8 76 94.7
RcHm_v2.0_Chr3g0473571 Rosa chinensis HOM05D000092 ORTHO05D000042 1.1e-16 89.7 77 62.3
RcHm_v2.0_Chr5g0080281 Rosa chinensis HOM05D000092 ORTHO05D000042 1.6e-15 85.9 76 56.6
RcHm_v2.0_Chr5g0080241 Rosa chinensis HOM05D000092 ORTHO05D000042 3.5e-15 84.7 76 55.3
RcHm_v2.0_Chr3g0473561 Rosa chinensis HOM05D000092 ORTHO05D000042 1.3e-14 82.8 78 56.4
FvH4_7g06680 Fragaria vesca HOM05D000092 ORTHO05D000042 3.0e-14 81.6 81 55.6
RcHm_v2.0_Chr5g0079791 Rosa chinensis HOM05D000092 ORTHO05D000042 2.5e-13 78.6 73 56.2
RcHm_v2.0_Chr3g0473481 Rosa chinensis HOM05D000092 ORTHO05D000042 3.3e-13 78.2 76 51.3
RcHm_v2.0_Chr3g0473531 Rosa chinensis HOM05D000092 ORTHO05D000042 3.3e-13 78.2 76 51.3
RcHm_v2.0_Chr3g0473441 Rosa chinensis HOM05D000092 ORTHO05D000042 7.4e-13 77.0 63 61.9
FAN21G2001 Fragaria x ananassa HOM05D000092 ORTHO05D000042 1.6e-12 75.9 84 46.4
RcHm_v2.0_Chr5g0079811 Rosa chinensis HOM05D000092 ORTHO05D000042 3.7e-12 74.7 83 51.8
RcHm_v2.0_Chr5g0076771 Rosa chinensis HOM05D000092 ORTHO05D000042 8.2e-12 73.6 57 61.4
FAN10G3520 Fragaria x ananassa HOM05D000092 ORTHO05D000042 5.3e-11 70.9 38 86.8
RcHm_v2.0_Chr3g0473291 Rosa chinensis HOM05D000092 ORTHO05D000042 5.3e-11 70.9 64 59.4
RcHm_v2.0_Chr3g0473341 Rosa chinensis HOM05D000092 ORTHO05D000042 5.3e-11 70.9 67 56.7
FvH4_3g35832 Fragaria vesca HOM05D000092 ORTHO05D000042 1.2e-10 69.7 80 46.2
RcHm_v2.0_Chr7g0212741 Rosa chinensis HOM05D000092 ORTHO05D035911 1.2e-10 69.7 70 54.3
Dinv41192 Davidia involucrata HOM05D000092 ORTHO05D000042 1.5e-10 69.3 79 50.6
FAN05G0791 Fragaria x ananassa HOM05D000092 ORTHO05D000042 1.5e-10 69.3 82 47.6
FAN23G2102 Fragaria x ananassa HOM05D000092 ORTHO05D000042 1.5e-10 69.3 96 45.8
RcHm_v2.0_Chr5g0079821 Rosa chinensis HOM05D000092 ORTHO05D000042 1.5e-10 69.3 98 44.9
FAN25G3848 Fragaria x ananassa HOM05D000092 ORTHO05D000042 2.0e-10 68.9 90 43.3
RcHm_v2.0_Chr5g0069731 Rosa chinensis HOM05D000092 ORTHO05D000042 2.0e-10 68.9 74 50.0
FvH4_1g17740 Fragaria vesca HOM05D000092 ORTHO05D000042 2.6e-10 68.6 96 44.8
FAN16G0011 Fragaria x ananassa HOM05D000092 ORTHO05D000042 2.6e-10 68.6 72 56.9
RcHm_v2.0_Chr5g0079581 Rosa chinensis HOM05D000092 ORTHO05D000042 2.6e-10 68.6 90 46.7
FAN19G2889 Fragaria x ananassa HOM05D000092 ORTHO05D000042 3.4e-10 68.2 96 44.8
RcHm_v2.0_Chr5g0079511 Rosa chinensis HOM05D000092 ORTHO05D000042 5.8e-10 67.4 96 44.8
FvH4_3g43610 Fragaria vesca HOM05D000092 ORTHO05D000042 7.6e-10 67.0 63 57.1
FAN16G0956 Fragaria x ananassa HOM05D000092 ORTHO05D000042 7.6e-10 67.0 80 47.5
RcHm_v2.0_Chr5g0079861 Rosa chinensis HOM05D000092 ORTHO05D000042 7.6e-10 67.0 76 50.0
RcHm_v2.0_Chr5g0079351 Rosa chinensis HOM05D000092 ORTHO05D000042 1.0e-09 66.6 98 45.9
FAN21G1512 Fragaria x ananassa HOM05D000092 ORTHO05D000042 1.3e-09 66.2 64 53.1
FAN16G2679 Fragaria x ananassa HOM05D000092 ORTHO05D000042 1.7e-09 65.9 64 53.1
FvH4_3g43650 Fragaria vesca HOM05D000092 ORTHO05D000042 2.2e-09 65.5 62 51.6
FAN21G0471 Fragaria x ananassa HOM05D000092 ORTHO05D000042 2.2e-09 65.5 74 44.6
FvH4_3g43390 Fragaria vesca HOM05D000092 ORTHO05D000042 2.9e-09 65.1 64 54.7
FvH4_7g12671 Fragaria vesca HOM05D000092 ORTHO05D000042 2.9e-09 65.1 69 55.1
FAN01G2948 Fragaria x ananassa HOM05D000092 ORTHO05D000042 2.9e-09 65.1 69 55.1
FAN11G2056 Fragaria x ananassa HOM05D000092 ORTHO05D000042 2.9e-09 65.1 64 54.7
FAN11G3568 Fragaria x ananassa HOM05D000092 ORTHO05D000042 2.9e-09 65.1 64 54.7
RcHm_v2.0_Chr5g0079441 Rosa chinensis HOM05D000092 ORTHO05D000042 2.9e-09 65.1 70 52.9
FvH4_3g43880 Fragaria vesca HOM05D000092 ORTHO05D000042 3.8e-09 64.7 96 47.9
FAN10G1900 Fragaria x ananassa HOM05D000092 ORTHO05D000042 3.8e-09 64.7 69 55.1
RcHm_v2.0_Chr5g0079591 Rosa chinensis HOM05D000092 ORTHO05D000042 3.8e-09 64.7 74 50.0
FAN11G0903 Fragaria x ananassa HOM05D000092 ORTHO05D000042 5.0e-09 64.3 62 50.0
FAN11G2277 Fragaria x ananassa HOM05D000092 ORTHO05D000042 5.0e-09 64.3 96 46.9
FAN21G3689 Fragaria x ananassa HOM05D000092 ORTHO05D000042 5.0e-09 64.3 90 50.0
RcHm_v2.0_Chr5g0061291 Rosa chinensis HOM05D000092 ORTHO05D000042 5.0e-09 64.3 77 49.4
FvH4_3g43860 Fragaria vesca HOM05D000092 ORTHO05D000042 6.5e-09 63.9 89 46.1
FvH4_3g43991 Fragaria vesca HOM05D000092 ORTHO05D000042 1.1e-08 63.2 90 48.9
FAN11G3689 Fragaria x ananassa HOM05D000092 ORTHO05D000042 1.1e-08 63.2 66 47.0
FvH4_3g45700 Fragaria vesca HOM05D000092 ORTHO05D000042 1.4e-08 62.8 91 41.8
FvH4_7g31510 Fragaria vesca HOM05D000092 ORTHO05D000042 1.4e-08 62.8 82 43.9
FAN03G1639 Fragaria x ananassa HOM05D000092 ORTHO05D000042 1.4e-08 62.8 62 53.2
FAN11G2332 Fragaria x ananassa HOM05D000759 ORTHO05D000574 1.4e-08 62.8 96 45.8
FAN01G1298 Fragaria x ananassa HOM05D000092 ORTHO05D000042 1.9e-08 62.4 62 53.2
RcHm_v2.0_Chr5g0079361 Rosa chinensis HOM05D000092 ORTHO05D000042 1.9e-08 62.4 82 46.3
FAN04G1123 Fragaria x ananassa HOM05D000092 ORTHO05D000042 2.5e-08 62.0 80 45.0
FAN16G3330 Fragaria x ananassa HOM05D000092 ORTHO05D000042 2.5e-08 62.0 96 44.8
FAN25G1517 Fragaria x ananassa HOM05D000092 ORTHO05D000042 2.5e-08 62.0 61 52.5
FvH4_3g43940 Fragaria vesca HOM05D000092 ORTHO05D000042 3.2e-08 61.6 75 52.0
FvH4_3g45680 Fragaria vesca HOM05D000092 ORTHO05D000042 3.2e-08 61.6 89 41.6
FvH4_3g45720 Fragaria vesca HOM05D000092 ORTHO05D000042 3.2e-08 61.6 89 41.6
FAN16G0155 Fragaria x ananassa HOM05D000092 ORTHO05D000042 3.2e-08 61.6 90 40.0
FAN21G3596 Fragaria x ananassa HOM05D000092 ORTHO05D000042 3.2e-08 61.6 61 52.5
RcHm_v2.0_Chr5g0080371 Rosa chinensis HOM05D000092 ORTHO05D000042 3.2e-08 61.6 75 49.3
FAN11G0977 Fragaria x ananassa HOM05D000092 ORTHO05D000042 4.2e-08 61.2 63 54.0
FvH4_3g43631 Fragaria vesca HOM05D000092 ORTHO05D000042 5.5e-08 60.8 63 52.4
FvH4_3g45730 Fragaria vesca HOM05D000092 ORTHO05D000042 5.5e-08 60.8 92 40.2
FAN11G0487 Fragaria x ananassa HOM05D000092 ORTHO05D000042 5.5e-08 60.8 65 50.8
FAN21G1621 Fragaria x ananassa HOM05D000092 ORTHO05D000042 5.5e-08 60.8 65 53.8
FAN11G2559 Fragaria x ananassa HOM05D000092 ORTHO05D000042 7.1e-08 60.5 86 43.0
FAN21G0690 Fragaria x ananassa HOM05D000092 ORTHO05D000042 7.1e-08 60.5 61 50.8
FvH4_3g45170 Fragaria vesca HOM05D000092 ORTHO05D000042 9.3e-08 60.1 91 42.9
FvH4_3g45643 Fragaria vesca HOM05D000092 ORTHO05D000042 9.3e-08 60.1 61 50.8
FvH4_5g27640 Fragaria vesca HOM05D000092 ORTHO05D000042 9.3e-08 60.1 80 43.8
FAN11G3161 Fragaria x ananassa HOM05D000092 ORTHO05D000042 9.3e-08 60.1 61 50.8
FAN18G1632 Fragaria x ananassa HOM05D000092 ORTHO05D000042 9.3e-08 60.1 80 43.8
FAN21G1771 Fragaria x ananassa HOM05D000092 ORTHO05D000042 9.3e-08 60.1 61 50.8
FvH4_3g44561 Fragaria vesca HOM05D000092 ORTHO05D000042 1.2e-07 59.7 89 40.4
FvH4_3g45642 Fragaria vesca HOM05D000092 ORTHO05D000042 1.2e-07 59.7 89 41.6
FvH4_6g52372 Fragaria vesca HOM05D000092 ORTHO05D000042 1.6e-07 59.3 82 42.7
FAN11G3794 Fragaria x ananassa HOM05D000092 ORTHO05D000042 1.6e-07 59.3 75 48.0
FAN25G2695 Fragaria x ananassa HOM05D000092 ORTHO05D000042 1.6e-07 59.3 65 50.8
FAN10G1378 Fragaria x ananassa HOM05D000092 ORTHO05D000042 2.1e-07 58.9 74 45.9
FAN11G3538 Fragaria x ananassa HOM05D000092 ORTHO05D000042 2.1e-07 58.9 61 50.8
FAN16G1025 Fragaria x ananassa HOM05D000092 ORTHO05D000042 2.1e-07 58.9 100 42.0
FAN16G2782 Fragaria x ananassa HOM05D000092 ORTHO05D000042 2.1e-07 58.9 89 41.6
FAN25G1458 Fragaria x ananassa HOM05D000092 ORTHO05D000042 2.1e-07 58.9 91 40.7
RcHm_v2.0_Chr5g0079881 Rosa chinensis HOM05D000092 ORTHO05D000042 2.1e-07 58.9 76 50.0
FvH4_3g35820 Fragaria vesca HOM05D000092 ORTHO05D000042 2.7e-07 58.5 69 49.3
FvH4_3g44680 Fragaria vesca HOM05D000092 ORTHO05D000042 2.7e-07 58.5 86 41.9
FvH4_3g45690 Fragaria vesca HOM05D000092 ORTHO05D000042 2.7e-07 58.5 89 41.6
FAN25G2124 Fragaria x ananassa HOM05D000092 ORTHO05D000042 2.7e-07 58.5 69 49.3
FvH4_3g43630 Fragaria vesca HOM05D000092 ORTHO05D000042 3.5e-07 58.2 62 51.6
FvH4_3g45631 Fragaria vesca HOM05D000092 ORTHO05D000042 3.5e-07 58.2 92 40.2
FAN11G3840 Fragaria x ananassa HOM05D000092 ORTHO05D000042 3.5e-07 58.2 59 54.2
FAN16G2762 Fragaria x ananassa HOM05D000092 ORTHO05D000042 3.5e-07 58.2 72 45.8
FvH4_7g08890 Fragaria vesca HOM05D000092 ORTHO05D000042 4.6e-07 57.8 76 43.4
FAN06G2052 Fragaria x ananassa HOM05D000092 ORTHO05D000042 4.6e-07 57.8 79 41.8
FAN11G0261 Fragaria x ananassa HOM05D000092 ORTHO05D000042 4.6e-07 57.8 62 48.4
FAN16G1230 Fragaria x ananassa HOM05D000092 ORTHO05D000042 4.6e-07 57.8 76 43.4
FAN25G0580 Fragaria x ananassa HOM05D000092 ORTHO05D000042 4.6e-07 57.8 61 49.2
FvH4_6g01282 Fragaria vesca HOM05D000092 ORTHO05D000042 6.1e-07 57.4 59 52.5
FAN11G0410 Fragaria x ananassa HOM05D000092 ORTHO05D000042 6.1e-07 57.4 73 46.6
FAN11G0640 Fragaria x ananassa HOM05D000092 ORTHO05D000042 6.1e-07 57.4 92 43.5
RcHm_v2.0_Chr5g0064081 Rosa chinensis HOM05D001215 ORTHO05D000042 6.1e-07 57.4 68 44.1
RcHm_v2.0_Chr5g0078301 Rosa chinensis HOM05D000092 ORTHO05D000042 6.1e-07 57.4 64 50.0
RcHm_v2.0_Chr6g0274621 Rosa chinensis HOM05D000092 ORTHO05D035911 6.1e-07 57.4 47 63.8
FvH4_3g43960 Fragaria vesca HOM05D000092 ORTHO05D000042 7.9e-07 57.0 65 46.2
FAN16G2441 Fragaria x ananassa HOM05D000092 ORTHO05D000042 7.9e-07 57.0 61 49.2
FvH4_3g44570 Fragaria vesca HOM05D000092 ORTHO05D000042 1.0e-06 56.6 57 52.6
FvH4_6g52370 Fragaria vesca HOM05D000092 ORTHO05D000042 1.0e-06 56.6 74 47.3
FAN11G0546 Fragaria x ananassa HOM05D000092 ORTHO05D000042 1.3e-06 56.2 74 45.9
RcHm_v2.0_Chr5g0061301 Rosa chinensis HOM05D000092 ORTHO05D000042 1.3e-06 56.2 70 47.1
GSVIVG01029297001 Vitis vinifera HOM05D000092 ORTHO05D000042 1.3e-06 56.2 77 44.2
FAN03G0712 Fragaria x ananassa HOM05D000092 ORTHO05D000042 1.8e-06 55.8 75 48.0
FAN16G2134 Fragaria x ananassa HOM05D000092 ORTHO05D000042 1.8e-06 55.8 57 50.9
MD11G1019800 Malus domestica HOM05D000092 ORTHO05D000042 1.8e-06 55.8 73 45.2
FvH4_3g43660 Fragaria vesca HOM05D000092 ORTHO05D000042 2.3e-06 55.5 67 49.3
FvH4_3g43890 Fragaria vesca HOM05D000092 ORTHO05D000042 2.3e-06 55.5 67 44.8
FvH4_3g44670 Fragaria vesca HOM05D000092 ORTHO05D000042 3.0e-06 55.1 92 38.0
FAN17G1498 Fragaria x ananassa HOM05D000092 ORTHO05D000042 3.0e-06 55.1 80 43.8
QL11p008844 Quercus lobata HOM05D000092 ORTHO05D000042 3.0e-06 55.1 76 42.1
FvH4_6g05393 Fragaria vesca HOM05D000092 ORTHO05D000042 3.9e-06 54.7 79 41.8
FAN14G4314 Fragaria x ananassa HOM05D000092 ORTHO05D000042 3.9e-06 54.7 79 41.8
FAN16G1657 Fragaria x ananassa HOM05D000092 ORTHO05D000042 3.9e-06 54.7 90 37.8
FAN25G0521 Fragaria x ananassa HOM05D000092 ORTHO05D000042 3.9e-06 54.7 64 45.3
FAN11G3754 Fragaria x ananassa HOM05D000092 ORTHO05D000042 5.1e-06 54.3 81 44.4
FAN21G0511 Fragaria x ananassa HOM05D000092 ORTHO05D000042 5.1e-06 54.3 72 44.4
RcHm_v2.0_Chr5g0059311 Rosa chinensis HOM05D000092 ORTHO05D000042 5.1e-06 54.3 79 41.8
FvH4_3g35920 Fragaria vesca HOM05D000092 ORTHO05D000042 8.7e-06 53.5 75 44.0
FAN17G0067 Fragaria x ananassa HOM05D000092 ORTHO05D000042 8.7e-06 53.5 76 43.4


User provided reference genes

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