Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN06G1875 Fragaria x ananassa HOM05D005802 ORTHO05D006992 8.5e-157 557.0 286 100.0
FAN06G3617 Fragaria x ananassa HOM05D005802 ORTHO05D006992 3.0e-146 521.9 286 95.1
FAN10G1300 Fragaria x ananassa HOM05D005802 ORTHO05D006992 1.5e-145 519.6 286 94.8
FAN10G3200 Fragaria x ananassa HOM05D005802 ORTHO05D006992 1.7e-144 516.2 286 94.4
FAN03G1851 Fragaria x ananassa HOM05D005802 ORTHO05D006992 5.9e-142 507.7 286 92.0
FAN01G2984 Fragaria x ananassa HOM05D005802 ORTHO05D006992 7.2e-140 500.7 286 92.0
RcHm_v2.0_Chr5g0028911 Rosa chinensis HOM05D005802 ORTHO05D006992 2.8e-128 462.2 291 84.2
FvH4_7g11150 Fragaria vesca HOM05D005802 ORTHO05D006992 1.1e-127 460.3 261 92.7
MD02G1209900 Malus domestica HOM05D005802 ORTHO05D006992 2.0e-118 429.5 283 78.4
Prupe.2G138600 Prunus persica HOM05D005802 ORTHO05D006992 4.3e-116 421.8 286 77.3
Haze_02673 Corylus avellana HOM05D005802 ORTHO05D006992 1.9e-108 396.4 284 72.2
CiPaw.13G033000 Carya illinoinensis HOM05D005802 ORTHO05D006992 2.8e-107 392.5 286 71.0
QL04p039160 Quercus lobata HOM05D005802 ORTHO05D006992 3.7e-104 382.1 286 70.6
Ciclev10021687m.g Citrus clementina HOM05D005802 ORTHO05D006992 7.1e-103 377.9 286 69.9
COL.COLO4_12497 Corchorus olitorius HOM05D005802 ORTHO05D006992 7.1e-103 377.9 290 69.3
CANSAT56G0664 Cannabis sativa HOM05D005802 ORTHO05D006992 1.6e-102 376.7 288 69.8
PGR042G3152 Punica granatum HOM05D005802 ORTHO05D006992 7.8e-102 374.4 287 67.6
GSVIVG01027639001 Vitis vinifera HOM05D005802 ORTHO05D006992 7.8e-102 374.4 286 68.2
Duzib133G1160 Durio zibethinus HOM05D005802 ORTHO05D006992 2.3e-101 372.9 289 70.2
Thecc.01G381900 Theobroma cacao HOM05D005802 ORTHO05D006992 8.6e-101 370.9 289 68.9
Glyma.01G137000 Glycine max HOM05D005802 ORTHO05D006992 1.5e-100 370.2 287 67.6
Eucgr.D02489 Eucalyptus grandis HOM05D005802 ORTHO05D006992 1.9e-100 369.8 286 67.8
Gohir.A12G094400 Gossypium hirsutum HOM05D005802 ORTHO05D006992 2.5e-100 369.4 286 67.8
Lj3g0015572 Lotus japonicus HOM05D005802 ORTHO05D006992 2.5e-100 369.4 287 66.9
Manes.05G048500 Manihot esculenta HOM05D005802 ORTHO05D006992 7.3e-100 367.9 286 66.1
Gohir.D12G097200 Gossypium hirsutum HOM05D005802 ORTHO05D006992 9.5e-100 367.5 286 67.1
Phvul.010G077700 Phaseolus vulgaris HOM05D005802 ORTHO05D006992 1.2e-99 367.1 287 67.2
Cfa011175 Carpinus fangiana HOM05D005802 ORTHO05D006992 2.1e-99 366.3 276 69.2
Cpa.g.sc49.162 Carica papaya HOM05D005802 ORTHO05D006992 6.2e-99 364.8 287 66.9
Gorai.008G105800 Gossypium raimondii HOM05D005802 ORTHO05D006992 1.4e-98 363.6 286 67.1
Atru.chr5.259 Acer truncatum HOM05D005802 ORTHO05D006992 5.2e-98 361.7 284 69.0
Potri.014G060000 Populus trichocarpa HOM05D005802 ORTHO05D006992 5.2e-98 361.7 285 68.8
AL5G42970 Arabidopsis lyrata HOM05D005802 ORTHO05D006992 6.8e-98 361.3 289 65.7
arahy.Tifrunner.gnm1.ann1.I9SF1K Arachis hypogaea HOM05D005802 ORTHO05D006992 2.6e-97 359.4 285 66.3
AT3G60660 Arabidopsis thaliana HOM05D005802 ORTHO05D006992 3.4e-97 359.0 289 65.4
CSS0000774 Camellia sinensis var. sinensis HOM05D005802 ORTHO05D006992 3.4e-97 359.0 286 65.7
TWI23G1076 Tripterygium wilfordii HOM05D005802 ORTHO05D006992 9.9e-97 357.5 284 66.2
THA.LOC104802463 Tarenaya hassleriana HOM05D005802 ORTHO05D006992 1.3e-96 357.1 289 65.1
CARHR171060 Cardamine hirsuta HOM05D005802 ORTHO05D006992 2.2e-96 356.3 289 65.1
Sabra14G0043900 Salix brachista HOM05D005802 ORTHO05D006992 3.7e-96 355.5 294 66.3
Actinidia12678 Actinidia chinensis HOM05D005802 ORTHO05D006992 4.9e-96 355.1 281 65.1
Aa31LG10G14950 Aethionema arabicum HOM05D005802 ORTHO05D006992 1.1e-95 354.0 289 64.4
BolC8t51149H Brassica oleracea HOM05D005802 ORTHO05D006992 1.4e-95 353.6 286 65.4
TAR375G0577 Trochodendron aralioides HOM05D005802 ORTHO05D006992 1.4e-95 353.6 284 63.4
C08p35600 Brassica napus HOM05D005802 ORTHO05D006992 1.9e-95 353.2 289 64.7
Rhsim01G0150000 Rhododendron simsii HOM05D005802 ORTHO05D006992 4.1e-95 352.1 286 63.3
Sc02g0002770 Simmondsia chinensis HOM05D005802 ORTHO05D006992 9.2e-95 350.9 286 64.0
Nn6g34003 Nelumbo nucifera HOM05D005802 ORTHO05D006992 1.2e-94 350.5 286 65.4
Thhalv10006164m.g Eutrema salsugineum HOM05D005802 ORTHO05D006992 2.1e-94 349.7 289 64.0
Sp5g02580 Schrenkiella parvula HOM05D005802 ORTHO05D006992 3.5e-94 349.0 289 63.3
BcaC07g40584 Brassica carinata HOM05D005802 ORTHO05D006992 2.3e-93 346.3 291 62.9
A09p52850 Brassica napus HOM05D005802 ORTHO05D006992 3.9e-93 345.5 289 63.0
AUR62013665 Chenopodium quinoa HOM05D005802 ORTHO05D006992 3.9e-93 345.5 287 62.7
arahy.Tifrunner.gnm1.ann1.GQKS8P Arachis hypogaea HOM05D005802 ORTHO05D006992 5.1e-93 345.1 321 59.5
Lsat_1_v5_gn_4_44621 Lactuca sativa HOM05D005802 ORTHO05D006992 3.3e-92 342.4 287 63.4
TPR.G5024 Trifolium pratense HOM05D005802 ORTHO05D006992 4.3e-92 342.0 288 63.9
Psat7g217800 Pisum sativum HOM05D005802 ORTHO05D006992 1.6e-91 340.1 285 62.5
Medtr4g026180 Medicago truncatula HOM05D005802 ORTHO05D006992 8.9e-90 334.3 284 62.3
MSTRG.17165 Avicennia marina HOM05D005802 ORTHO05D006992 1.5e-89 333.6 284 60.9
DCAR_025098 Daucus carota HOM05D005802 ORTHO05D006992 3.8e-88 328.9 286 62.6
Carub.0005s2739 Capsella rubella HOM05D005802 ORTHO05D006992 1.9e-87 326.6 280 62.5
Peaxi162Scf01052g00014 Petunia axillaris HOM05D005802 ORTHO05D006992 3.2e-87 325.9 286 59.4
VMungo0331G0187 Vigna mungo HOM05D005802 ORTHO05D006992 3.2e-87 325.9 262 65.6
Sed0027573 Sechium edule HOM05D005802 ORTHO05D006992 5.4e-87 325.1 286 61.2
ClCG09G008930 Citrullus lanatus HOM05D005802 ORTHO05D006992 7.1e-87 324.7 287 60.6
HanXRQChr03g0088101 Helianthus annuus HOM05D005802 ORTHO05D006992 7.1e-87 324.7 290 61.0
ECA234G0875 Erigeron canadensis HOM05D005802 ORTHO05D006992 2.7e-86 322.8 293 60.8
AUR62004168 Chenopodium quinoa HOM05D005802 ORTHO05D006992 4.6e-86 322.0 287 60.6
CAN.G106.25 Capsicum annuum HOM05D005802 ORTHO05D006992 1.0e-85 320.9 286 59.8
BraA09t40717Z Brassica rapa HOM05D005802 ORTHO05D006992 1.3e-85 320.5 354 52.0
PSO017G7043 Papaver somniferum HOM05D005802 ORTHO05D006992 5.1e-85 318.5 288 60.4
Hund27376 Selenicereus undatus HOM05D005802 ORTHO05D006992 1.1e-84 317.4 288 60.4
Aqoxy7G00743 Aquilegia oxysepala HOM05D005802 ORTHO05D006992 1.5e-84 317.0 287 60.6
PGSC0003DMG400007022 Solanum tuberosum HOM05D005802 ORTHO05D006992 1.5e-84 317.0 286 58.4
PSO478G1061 Papaver somniferum HOM05D005802 ORTHO05D006992 1.9e-84 316.6 288 60.1
Migut.B01600 Erythranthe guttata HOM05D005802 ORTHO05D006992 2.5e-84 316.2 284 58.1
CsaV3_7G026130 Cucumis sativus L. HOM05D005802 ORTHO05D006992 1.3e-83 313.9 287 60.6
RcHm_v2.0_Chr1g0349231 Rosa chinensis HOM05D005802 ORTHO05D006992 1.3e-83 313.9 210 79.5
Solyc05g050900.4 Solanum lycopersicum HOM05D005802 ORTHO05D006992 1.3e-83 313.9 286 58.0
SalBow5G5068 Salvia bowleyana HOM05D005802 ORTHO05D006992 1.6e-83 313.5 284 58.5
Sopen05g029380 Solanum pennellii HOM05D005802 ORTHO05D006992 2.1e-83 313.2 286 58.0
Dinv44124 Davidia involucrata HOM05D005802 ORTHO05D006992 2.8e-83 312.8 273 60.8
Cc02_g24280 Coffea canephora HOM05D005802 ORTHO05D006992 1.1e-82 310.8 287 57.5
Carub.0005s2750 Capsella rubella HOM05D005802 ORTHO05D006992 9.0e-82 307.8 277 61.0
Nitab4.5_0001329g0060 Nicotiana tabacum HOM05D005802 ORTHO05D006992 2.1e-78 296.6 276 55.8
Actinidia28320 Actinidia chinensis HOM05D005802 ORTHO05D006992 1.9e-76 290.0 235 63.0
Os07g0484500 Oryza sativa ssp. japonica HOM05D005802 ORTHO05D006992 4.8e-75 285.4 290 54.5
SGA_v2.0_scaffold153G36973 Striga asiatica HOM05D005802 ORTHO05D006992 4.8e-75 285.4 261 55.9
vmacro21028 Vaccinium macrocarpon HOM05D005802 ORTHO05D006992 2.0e-73 280.0 287 55.4
ATR1153G072 Amborella trichopoda HOM05D005802 ORTHO05D006992 5.8e-73 278.5 283 55.8
Ca_02431_v3 Cicer arietinum L. HOM05D005802 ORTHO05D006992 1.0e-69 267.7 271 55.0
Nitab4.5_0005050g0030 Nicotiana tabacum HOM05D005802 ORTHO05D006992 4.8e-67 258.8 285 50.9
CDE04G3422 Ceratophyllum demersum HOM05D005802 ORTHO05D006992 8.1e-67 258.1 303 49.2
Zm00001eb321530 Zea mays HOM05D005802 ORTHO05D006992 2.0e-65 253.4 285 49.5
TAR375G0251 Trochodendron aralioides HOM05D005802 ORTHO05D006992 1.9e-63 246.9 205 60.0
RcHm_v2.0_Chr1g0349201 Rosa chinensis HOM05D005802 ORTHO05D006992 5.5e-63 245.4 359 47.9
Lalb_Chr12g0208021 Lupinus albus HOM05D005802 ORTHO05D006992 3.5e-62 242.7 197 63.5
EL10Ac1g00841 Beta vulgaris HOM05D005802 ORTHO05D006992 7.9e-62 241.5 286 50.0
Lj7A534G38 Lonicera japonica HOM05D000908 ORTHO05D000789 1.2e-57 227.6 261 51.3
FAN03G0906 Fragaria x ananassa HOM05D005802 ORTHO05D006992 1.6e-54 217.2 125 89.6
FAN03G0348 Fragaria x ananassa HOM05D005802 ORTHO05D006992 3.6e-54 216.1 125 88.8
Oeu051925.1 Olea europaea HOM05D005802 ORTHO05D006992 6.7e-53 211.8 262 47.3
MELO3C021033.2 Cucumis melo HOM05D005802 ORTHO05D006992 9.7e-52 208.0 199 57.8
Mapoly0010s0189 Marchantia polymorpha HOM05D005802 ORTHO05D006992 3.7e-51 206.1 276 42.4
RcHm_v2.0_Chr1g0349161 Rosa chinensis HOM05D005802 ORTHO05D006992 2.9e-48 196.4 152 73.7
Pp3c6_12030 Physcomitrium patens HOM05D005802 ORTHO05D006992 2.1e-46 190.3 273 39.9
AagrBONN_evm.TU.Sc2ySwM_368.1567 Anthoceros agrestis HOM05D005802 ORTHO05D006992 3.0e-45 186.4 276 39.9
Oeu051926.1 Olea europaea HOM05D005802 ORTHO05D006992 3.0e-45 186.4 152 60.5
RcHm_v2.0_Chr1g0349241 Rosa chinensis HOM05D005802 ORTHO05D006992 3.7e-43 179.5 112 86.6
SMO347G0664 Selaginella moellendorffii HOM05D005802 ORTHO05D006992 2.4e-42 176.8 242 43.4
RcHm_v2.0_Chr1g0349251 Rosa chinensis HOM05D005802 ORTHO05D006992 1.1e-36 157.9 100 82.0
Actinidia33479 Actinidia chinensis HOM05D005802 ORTHO05D006992 1.8e-34 150.6 148 54.7
Ah.05g173870 Amaranthus hybridus HOM05D005802 ORTHO05D006992 4.5e-33 146.0 135 54.8
Ah.05g173880 Amaranthus hybridus HOM05D005802 ORTHO05D006992 5.9e-33 145.6 124 62.9
Oeu055514.1 Olea europaea HOM05D005802 ORTHO05D006992 1.4e-29 134.4 146 50.7
SHI22577 Sapria himalayana HOM05D005802 ORTHO05D006992 1.2e-28 131.3 160 48.1
SHI22578 Sapria himalayana HOM05D005802 ORTHO05D006992 3.5e-25 119.8 101 63.4
Glyma.03G031466 Glycine max HOM05D005802 ORTHO05D006992 7.7e-25 118.6 100 63.0
Hma1.2p1_0072F.1_g038280 Hydrangea macrophylla HOM05D005802 ORTHO05D006992 1.1e-23 114.8 112 56.2
FAN10G4230 Fragaria x ananassa HOM05D005802 ORTHO05D006992 3.2e-23 113.2 56 94.6
Cc00_g05160 Coffea canephora HOM05D005802 ORTHO05D006992 1.2e-22 111.3 124 54.8
Cre16.g672500 Chlamydomonas reinhardtii HOM05D005802 ORTHO05D006992 4.7e-22 109.4 283 30.4
RcHm_v2.0_Chr1g0349171 Rosa chinensis HOM05D005802 ORTHO05D006992 1.4e-21 107.8 58 94.8
CBR_g48776 Chara braunii HOM05D005802 ORTHO05D006992 3.0e-21 106.7 269 30.5
Cc00_g05150 Coffea canephora HOM05D005802 ORTHO05D006992 4.0e-21 106.3 127 53.5
Lalb_Chr12g0208011 Lupinus albus HOM05D005802 ORTHO05D006992 2.6e-20 103.6 74 71.6
Oeu045806.1 Olea europaea HOM05D005802 ORTHO05D006992 3.4e-20 103.2 74 67.6
ECA240G2706 Erigeron canadensis HOM05D001255 ORTHO05D001246 4.1e-18 96.3 65 73.8
CARHR170760 Cardamine hirsuta HOM05D005802 ORTHO05D006992 2.7e-17 93.6 74 63.5
C04p32020 Brassica napus HOM05D010895 ORTHO05D012939 7.7e-17 92.0 132 46.2
FAN06G0568 Fragaria x ananassa HOM05D005802 ORTHO05D006992 1.5e-15 87.8 56 78.6
BolC4t24754H Brassica oleracea HOM05D005802 ORTHO05D006992 1.9e-15 87.4 119 49.6
Dinv44127 Davidia involucrata HOM05D005802 ORTHO05D006992 1.9e-15 87.4 96 45.8
Glyma.03G031532 Glycine max HOM05D005802 ORTHO05D006992 1.1e-10 71.6 82 52.4
Aa31sc27G90 Aethionema arabicum HOM05D005802 ORTHO05D006992 1.6e-06 57.8 69 47.8
SGA_v2.0_scaffold123G33454 Striga asiatica HOM05D000451 ORTHO05D000351 1.6e-06 57.8 114 34.2


User provided reference genes

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