Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN06G1791 Fragaria x ananassa HOM05D003149 ORTHO05D003529 6.6e-173 610.5 290 100.0
FAN15G2890 Fragaria x ananassa HOM05D003149 ORTHO05D003529 2.0e-36 157.1 121 66.1
FvH4_2g08280 Fragaria vesca HOM05D003149 ORTHO05D003529 3.7e-35 152.9 121 65.3
FAN24G1951 Fragaria x ananassa HOM05D003149 ORTHO05D003529 3.7e-35 152.9 121 65.3
RcHm_v2.0_Chr6g0263161 Rosa chinensis HOM05D003149 ORTHO05D003529 3.2e-26 123.2 133 53.4
Sabra17G0021200 Salix brachista HOM05D003149 ORTHO05D003529 8.9e-21 105.1 114 49.1
Ciclev10021620m.g Citrus clementina HOM05D003149 ORTHO05D003529 1.2e-20 104.8 102 52.9
Duzib093G1636 Durio zibethinus HOM05D003149 ORTHO05D003529 1.5e-20 104.4 113 46.9
FvH4_4g11360 Fragaria vesca HOM05D003149 ORTHO05D003529 9.9e-20 101.7 99 56.6
FAN07G0836 Fragaria x ananassa HOM05D003149 ORTHO05D003529 1.3e-19 101.3 99 55.6
Potri.017G035200 Populus trichocarpa HOM05D003149 ORTHO05D003529 1.7e-19 100.9 117 45.3
Atru.chr3.1569 Acer truncatum HOM05D003149 ORTHO05D003529 3.8e-19 99.8 115 46.1
Atru.chr3.1588 Acer truncatum HOM05D003149 ORTHO05D003529 3.8e-19 99.8 115 46.1
Thecc.05G003000 Theobroma cacao HOM05D003149 ORTHO05D003529 1.1e-18 98.2 121 44.6
Cpa.g.sc71.18 Carica papaya HOM05D003149 ORTHO05D003529 5.4e-18 95.9 123 43.9
COL.COLO4_14418 Corchorus olitorius HOM05D001780 ORTHO05D004373 5.4e-18 95.9 159 37.7
Dinv22647 Davidia involucrata HOM05D003149 ORTHO05D003529 5.4e-18 95.9 100 48.0
Potri.007G126300 Populus trichocarpa HOM05D003149 ORTHO05D003529 5.4e-18 95.9 117 42.7
Actinidia34620 Actinidia chinensis HOM05D003149 ORTHO05D003529 7.1e-18 95.5 85 51.8
Haze_00730 Corylus avellana HOM05D003149 ORTHO05D003529 7.1e-18 95.5 101 48.5
Gohir.D09G164600 Gossypium hirsutum HOM05D003149 ORTHO05D003529 9.3e-18 95.1 110 46.4
Gorai.006G186400 Gossypium raimondii HOM05D003149 ORTHO05D003529 9.3e-18 95.1 110 46.4
Gohir.A09G168900 Gossypium hirsutum HOM05D003149 ORTHO05D003529 1.2e-17 94.7 110 46.4
Hma1.2p1_1961F.1_g309090 Hydrangea macrophylla HOM05D003149 ORTHO05D003529 1.6e-17 94.4 95 48.4
PGR083G1968 Punica granatum HOM05D003149 ORTHO05D003529 2.7e-17 93.6 105 47.6
RcHm_v2.0_Chr4g0407911 Rosa chinensis HOM05D003149 ORTHO05D003529 6.0e-17 92.4 98 49.0
CiPaw.02G056200 Carya illinoinensis HOM05D003149 ORTHO05D003529 7.8e-17 92.0 104 46.2
MD04G1037500 Malus domestica HOM05D003149 ORTHO05D003529 1.0e-16 91.7 102 45.1
THA.LOC104826191 Tarenaya hassleriana HOM05D003149 ORTHO05D003529 1.7e-16 90.9 116 42.2
Nn1g09739 Nelumbo nucifera HOM05D003149 ORTHO05D003529 2.3e-16 90.5 108 44.4
Lalb_Chr21g0317031 Lupinus albus HOM05D003149 ORTHO05D003529 3.0e-16 90.1 79 53.2
HanXRQChr07g0186141 Helianthus annuus HOM05D003149 ORTHO05D003529 6.6e-16 89.0 90 44.4
Haze_00724 Corylus avellana HOM05D003149 ORTHO05D003529 8.7e-16 88.6 96 47.9
QL10p047472 Quercus lobata HOM05D003149 ORTHO05D003529 8.7e-16 88.6 101 45.5
TAR362G1330 Trochodendron aralioides HOM05D003149 ORTHO05D003529 1.5e-15 87.8 113 38.9
Rhsim09G0030200 Rhododendron simsii HOM05D003149 ORTHO05D003529 1.9e-15 87.4 102 44.1
Sc09g0001350 Simmondsia chinensis HOM05D003149 ORTHO05D003529 1.9e-15 87.4 152 36.2
HanXRQChr16g0511871 Helianthus annuus HOM05D003149 ORTHO05D003529 2.5e-15 87.0 151 37.7
Sabra07G0102400 Salix brachista HOM05D003149 ORTHO05D003529 2.5e-15 87.0 111 40.5
HanXRQChr16g0517981 Helianthus annuus HOM05D003149 ORTHO05D003529 3.3e-15 86.7 86 47.7
CSS0004883 Camellia sinensis var. sinensis HOM05D003149 ORTHO05D003529 4.3e-15 86.3 96 46.9
CSS0028064 Camellia sinensis var. sinensis HOM05D003149 ORTHO05D003529 4.3e-15 86.3 96 46.9
Lsat_1_v5_gn_0_14541 Lactuca sativa HOM05D003149 ORTHO05D003529 4.3e-15 86.3 95 47.4
MD04G1037400 Malus domestica HOM05D003149 ORTHO05D003529 4.3e-15 86.3 124 38.7
Sc19g0002190 Simmondsia chinensis HOM05D003149 ORTHO05D003529 4.3e-15 86.3 182 33.0
THA.LOC104815863 Tarenaya hassleriana HOM05D003149 ORTHO05D003529 4.3e-15 86.3 169 34.9
vmacro01066 Vaccinium macrocarpon HOM05D003149 ORTHO05D003529 4.3e-15 86.3 144 38.2
AUR62030021 Chenopodium quinoa HOM05D003149 ORTHO05D003529 5.6e-15 85.9 112 41.1
TWI18G1429 Tripterygium wilfordii HOM05D003149 ORTHO05D003529 9.6e-15 85.1 112 43.8
Actinidia03243 Actinidia chinensis HOM05D003149 ORTHO05D003529 1.3e-14 84.7 94 44.7
Lalb_Chr24g0403041 Lupinus albus HOM05D003149 ORTHO05D003529 1.3e-14 84.7 103 46.6
Lj6A60G38 Lonicera japonica HOM05D003149 ORTHO05D003529 1.6e-14 84.3 107 45.8
SGA_v2.0_scaffold340G49312 Striga asiatica HOM05D003149 ORTHO05D003529 1.6e-14 84.3 102 42.2
TWI36G0408 Tripterygium wilfordii HOM05D003149 ORTHO05D003529 2.1e-14 84.0 98 44.9
Oeu034705.1 Olea europaea HOM05D003149 ORTHO05D003529 3.6e-14 83.2 124 37.1
Rhsim05G0164400 Rhododendron simsii HOM05D003149 ORTHO05D003529 3.6e-14 83.2 147 33.3
Cfa015771 Carpinus fangiana HOM05D003149 ORTHO05D003529 4.8e-14 82.8 103 45.6
Lalb_Chr14g0364251 Lupinus albus HOM05D003149 ORTHO05D003529 4.8e-14 82.8 107 44.9
FAN18G1537 Fragaria x ananassa HOM05D021278 ORTHO05D203826 6.2e-14 82.4 51 86.3
Lalb_Chr21g0307621 Lupinus albus HOM05D003149 ORTHO05D003529 6.2e-14 82.4 101 44.6
SHI29168 Sapria himalayana HOM05D003149 ORTHO05D003529 6.2e-14 82.4 124 35.5
Atru.chr12.1650 Acer truncatum HOM05D003149 ORTHO05D003529 8.1e-14 82.0 101 42.6
A08p36250 Brassica napus HOM05D003149 ORTHO05D003529 8.1e-14 82.0 105 41.9
BraA08t35529Z Brassica rapa HOM05D003149 ORTHO05D003529 8.1e-14 82.0 105 41.9
HPP92_004557 Vanilla planifolia HOM05D003149 ORTHO05D003529 1.1e-13 81.6 101 39.6
AL1G15800 Arabidopsis lyrata HOM05D003149 ORTHO05D003529 1.4e-13 81.3 104 45.2
MBI08_g01803_MAGBIO Magnolia biondii HOM05D003149 ORTHO05D003529 1.4e-13 81.3 99 43.4
Peaxi162Scf00563g00312 Petunia axillaris HOM05D003149 ORTHO05D003529 1.4e-13 81.3 79 44.3
AT1G05860 Arabidopsis thaliana HOM05D003149 ORTHO05D003529 1.8e-13 80.9 107 43.9
CDE09G0849 Ceratophyllum demersum HOM05D006262 ORTHO05D007266 1.8e-13 80.9 108 38.9
Dinv29078 Davidia involucrata HOM05D003149 ORTHO05D003529 1.8e-13 80.9 107 42.1
MBI11_g35029_MAGBIO Magnolia biondii HOM05D003149 ORTHO05D003529 3.1e-13 80.1 113 38.1
Carub.0001s0522 Capsella rubella HOM05D003149 ORTHO05D003529 4.0e-13 79.7 107 43.9
CDE02G3933 Ceratophyllum demersum HOM05D003149 ORTHO05D003529 4.0e-13 79.7 120 37.5
Ca_08244_v3 Cicer arietinum L. HOM05D003149 ORTHO05D003529 5.3e-13 79.3 101 43.6
Phvul.004G067500 Phaseolus vulgaris HOM05D003149 ORTHO05D003529 5.3e-13 79.3 86 46.5
MSTRG.8193 Avicennia marina HOM05D003149 ORTHO05D003529 6.9e-13 79.0 108 37.0
Haze_04605 Corylus avellana HOM05D003149 ORTHO05D003529 6.9e-13 79.0 119 38.7
Nitab4.5_0000069g0250 Nicotiana tabacum HOM05D003149 ORTHO05D003529 6.9e-13 79.0 109 38.5
SGA_v2.0_scaffold122G33204 Striga asiatica HOM05D003149 ORTHO05D003529 9.0e-13 78.6 108 37.0
vmacro14059 Vaccinium macrocarpon HOM05D003149 ORTHO05D003529 9.0e-13 78.6 109 38.5
CANSAT01G1641 Cannabis sativa HOM05D003149 ORTHO05D003529 1.2e-12 78.2 99 42.4
Ciclev10012589m.g Citrus clementina HOM05D003149 ORTHO05D003529 1.2e-12 78.2 117 37.6
Thhalv10008336m.g Eutrema salsugineum HOM05D003149 ORTHO05D003529 1.2e-12 78.2 163 35.0
Lsat_1_v5_gn_6_55141 Lactuca sativa HOM05D003149 ORTHO05D003529 1.2e-12 78.2 104 40.4
PGSC0003DMG401016399 Solanum tuberosum HOM05D003149 ORTHO05D003529 1.2e-12 78.2 110 38.2
Manes.04G040400 Manihot esculenta HOM05D003149 ORTHO05D003529 1.5e-12 77.8 128 38.3
CAN.G282.52 Capsicum annuum HOM05D003149 ORTHO05D003529 2.0e-12 77.4 106 40.6
Hma1.2p1_0597F.1_g186520 Hydrangea macrophylla HOM05D003149 ORTHO05D003529 2.0e-12 77.4 120 36.7
Manes.11G117400 Manihot esculenta HOM05D003149 ORTHO05D003529 2.0e-12 77.4 129 37.2
Medtr7g084890 Medicago truncatula HOM05D003149 ORTHO05D003529 2.0e-12 77.4 88 44.3
C08p02270 Brassica napus HOM05D003149 ORTHO05D003529 2.6e-12 77.0 108 41.7
MELO3C012775.2 Cucumis melo HOM05D003149 ORTHO05D003529 2.6e-12 77.0 116 39.7
Oeu001216.1 Olea europaea HOM05D003149 ORTHO05D003529 2.6e-12 77.0 110 39.1
VMungo0464G1958 Vigna mungo HOM05D003149 ORTHO05D003529 2.6e-12 77.0 95 43.2
A03p17790 Brassica napus HOM05D003149 ORTHO05D003529 3.4e-12 76.6 113 39.8
BraA03t11043Z Brassica rapa HOM05D003149 ORTHO05D003529 3.4e-12 76.6 113 39.8
arahy.Tifrunner.gnm1.ann1.U2W2LI Arachis hypogaea HOM05D003149 ORTHO05D003529 4.5e-12 76.3 111 38.7
BcaC05g24329 Brassica carinata HOM05D003149 ORTHO05D003529 4.5e-12 76.3 110 40.9
A10p04560 Brassica napus HOM05D003149 ORTHO05D003529 4.5e-12 76.3 106 42.5
C03p20870 Brassica napus HOM05D003149 ORTHO05D003529 4.5e-12 76.3 114 39.5
BolC3t14437H Brassica oleracea HOM05D003149 ORTHO05D003529 4.5e-12 76.3 114 39.5
BolC8t47019H Brassica oleracea HOM05D003149 ORTHO05D003529 4.5e-12 76.3 108 41.7
BraA10t42720Z Brassica rapa HOM05D003149 ORTHO05D003529 4.5e-12 76.3 106 42.5
Psat0ss1917g0040 Pisum sativum HOM05D003149 ORTHO05D003529 4.5e-12 76.3 88 43.2
Sp1g04680 Schrenkiella parvula HOM05D003149 ORTHO05D003529 4.5e-12 76.3 118 39.8
Aqoxy2G04110 Aquilegia oxysepala HOM05D003149 ORTHO05D003529 5.8e-12 75.9 137 31.4
arahy.Tifrunner.gnm1.ann1.H0MJIY Arachis hypogaea HOM05D003149 ORTHO05D003529 5.8e-12 75.9 111 40.5
Eucgr.H00413 Eucalyptus grandis HOM05D003149 ORTHO05D003529 5.8e-12 75.9 129 38.8
Solyc01g008190.4 Solanum lycopersicum HOM05D003149 ORTHO05D003529 5.8e-12 75.9 110 37.3
Sopen01g003730 Solanum pennellii HOM05D003149 ORTHO05D003529 5.8e-12 75.9 110 37.3
TPR.G31054 Trifolium pratense HOM05D003149 ORTHO05D003529 7.6e-12 75.5 84 46.4
VMungo0464G1154 Vigna mungo HOM05D003149 ORTHO05D003529 7.6e-12 75.5 131 36.6
arahy.Tifrunner.gnm1.ann1.4L1T75 Arachis hypogaea HOM05D003149 ORTHO05D003529 9.9e-12 75.1 111 41.4
CsaV3_7G025800 Cucumis sativus L. HOM05D003149 ORTHO05D003529 9.9e-12 75.1 115 39.1
Migut.F01844 Erythranthe guttata HOM05D003149 ORTHO05D003529 9.9e-12 75.1 109 38.5
CiPaw.07G085200 Carya illinoinensis HOM05D003149 ORTHO05D003529 1.3e-11 74.7 115 37.4
vmacro19582 Vaccinium macrocarpon HOM05D003149 ORTHO05D003529 1.3e-11 74.7 159 32.7
Thhalv10017019m.g Eutrema salsugineum HOM05D003149 ORTHO05D003529 1.7e-11 74.3 115 39.1
Sed0006305 Sechium edule HOM05D003149 ORTHO05D003529 1.7e-11 74.3 99 39.4
CARHR125250 Cardamine hirsuta HOM05D003149 ORTHO05D003529 2.2e-11 73.9 118 39.0
ClCG09G009140 Citrullus lanatus HOM05D003149 ORTHO05D003529 2.2e-11 73.9 114 36.0
Prupe.1G186800 Prunus persica HOM05D003149 ORTHO05D003529 2.2e-11 73.9 121 35.5
BolC5t29196H Brassica oleracea HOM05D003149 ORTHO05D003529 2.9e-11 73.6 151 36.4
Cfa006218 Carpinus fangiana HOM05D003149 ORTHO05D003529 2.9e-11 73.6 118 35.6
SEGI_36339 Sequoiadendron giganteum HOM05D003149 ORTHO05D003529 2.9e-11 73.6 103 37.9
arahy.Tifrunner.gnm1.ann1.V6QQET Arachis hypogaea HOM05D003149 ORTHO05D003529 3.8e-11 73.2 111 40.5
CDE08G0700 Ceratophyllum demersum HOM05D003149 ORTHO05D003529 4.9e-11 72.8 103 38.8
SEGI_35784 Sequoiadendron giganteum HOM05D003149 ORTHO05D003529 4.9e-11 72.8 116 36.2
C05p04220 Brassica napus HOM05D003149 ORTHO05D003529 6.4e-11 72.4 151 35.8
CARHR005400 Cardamine hirsuta HOM05D003149 ORTHO05D003529 6.4e-11 72.4 110 40.0
Glyma.16G149700 Glycine max HOM05D003149 ORTHO05D003529 6.4e-11 72.4 131 34.4
Glyma.16G149900 Glycine max HOM05D003149 ORTHO05D003529 6.4e-11 72.4 131 34.4
Sp4g14000 Schrenkiella parvula HOM05D003149 ORTHO05D003529 6.4e-11 72.4 165 33.9
DCAR_023903 Daucus carota HOM05D003149 ORTHO05D003529 8.4e-11 72.0 166 30.1
Glyma.02G068400 Glycine max HOM05D003149 ORTHO05D003529 1.1e-10 71.6 82 41.5
Glyma.02G068600 Glycine max HOM05D003149 ORTHO05D003529 1.1e-10 71.6 82 41.5
Phvul.004G067600 Phaseolus vulgaris HOM05D003149 ORTHO05D003529 1.1e-10 71.6 84 40.5
Potri.010G180200 Populus trichocarpa HOM05D003149 ORTHO05D003529 1.1e-10 71.6 130 34.6
Carub.0004s1290 Capsella rubella HOM05D003149 ORTHO05D003529 1.9e-10 70.9 118 37.3
Lj1g0025540 Lotus japonicus HOM05D003149 ORTHO05D003529 4.2e-10 69.7 92 42.4
AL4G26850 Arabidopsis lyrata HOM05D003149 ORTHO05D003529 5.4e-10 69.3 118 35.6
PSO017G3277 Papaver somniferum HOM05D003149 ORTHO05D003529 5.4e-10 69.3 148 30.4
Thecc.05G110700 Theobroma cacao HOM05D003149 ORTHO05D003529 5.4e-10 69.3 86 43.0
Gorai.004G087400 Gossypium raimondii HOM05D003149 ORTHO05D003529 9.3e-10 68.6 88 46.6
Sabra10G0138100 Salix brachista HOM05D003149 ORTHO05D003529 9.3e-10 68.6 164 30.5
Zm00001eb284530 Zea mays HOM05D003149 ORTHO05D003529 1.2e-09 68.2 109 37.6
Duzib106G1027 Durio zibethinus HOM05D003149 ORTHO05D003529 1.6e-09 67.8 88 42.0
Gohir.D10G121700 Gossypium hirsutum HOM05D003149 ORTHO05D003529 1.6e-09 67.8 87 40.2
Gorai.011G133800 Gossypium raimondii HOM05D003149 ORTHO05D003529 1.6e-09 67.8 87 40.2
Gohir.A10G145300 Gossypium hirsutum HOM05D003149 ORTHO05D003529 2.7e-09 67.0 87 40.2
ATR0743G205 Amborella trichopoda HOM05D003149 ORTHO05D003529 3.5e-09 66.6 105 31.4
PSO675G5052 Papaver somniferum HOM05D003149 ORTHO05D003529 3.5e-09 66.6 151 28.5
Aa31LG5G5350 Aethionema arabicum HOM05D003149 ORTHO05D003529 4.6e-09 66.2 118 31.4
FAN16G3651 Fragaria x ananassa HOM05D019825 ORTHO05D205381 4.6e-09 66.2 63 65.1
AT2G31600 Arabidopsis thaliana HOM05D003149 ORTHO05D003529 6.0e-09 65.9 116 35.3
CSS0012520 Camellia sinensis var. sinensis HOM05D003149 ORTHO05D003529 7.9e-09 65.5 120 35.8
Ah.06g195300 Amaranthus hybridus HOM05D003149 ORTHO05D003529 6.7e-08 62.4 112 37.5
AL5G34840 Arabidopsis lyrata HOM05D003149 ORTHO05D003529 6.7e-08 62.4 109 35.8
AT3G53860 Arabidopsis thaliana HOM05D003149 ORTHO05D003529 8.7e-08 62.0 174 30.5
Ca_11405_v3 Cicer arietinum L. HOM05D003149 ORTHO05D003529 1.5e-07 61.2 79 41.8
Lj5g0018615 Lotus japonicus HOM05D003149 ORTHO05D003529 1.5e-07 61.2 137 35.8
Hund22010 Selenicereus undatus HOM05D003149 ORTHO05D003529 1.5e-07 61.2 124 34.7
Zm00001eb351080 Zea mays HOM05D003149 ORTHO05D003529 1.5e-07 61.2 155 33.5
ATR0332G090 Amborella trichopoda HOM05D003149 ORTHO05D003529 3.3e-07 60.1 97 34.0
SEGI_08161 Sequoiadendron giganteum HOM05D003149 ORTHO05D003529 3.3e-07 60.1 96 34.4
Actinidia35962 Actinidia chinensis HOM05D003149 ORTHO05D003529 5.6e-07 59.3 79 43.0
MD14G1094600 Malus domestica HOM05D054494 ORTHO05D046554 1.6e-06 57.8 85 43.5
GSVIVG01010732001 Vitis vinifera HOM05D003149 ORTHO05D003529 1.6e-06 57.8 39 66.7
AUR62002600 Chenopodium quinoa HOM05D003149 ORTHO05D003529 2.1e-06 57.4 97 35.1
Gohir.D08G083250 Gossypium hirsutum HOM05D003149 ORTHO05D003529 2.1e-06 57.4 83 42.2
Gohir.A08G074050 Gossypium hirsutum HOM05D003149 ORTHO05D003529 8.1e-06 55.5 83 41.0
Sabra17G0022100 Salix brachista HOM05D003149 ORTHO05D003529 8.1e-06 55.5 31 71.0
TWI75G0623 Tripterygium wilfordii HOM05D003149 ORTHO05D003529 8.1e-06 55.5 107 33.6


User provided reference genes

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