Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN06G1776 Fragaria x ananassa HOM05D005133 ORTHO05D006685 7.8e-215 750.4 426 100.0
FvH4_7g15540 Fragaria vesca HOM05D005133 ORTHO05D006685 4.0e-211 738.0 433 97.9
FAN06G1340 Fragaria x ananassa HOM05D005133 ORTHO05D006685 3.5e-207 724.9 443 95.0
FAN10G2725 Fragaria x ananassa HOM05D005133 ORTHO05D006685 2.4e-203 712.2 441 94.1
FAN10G2939 Fragaria x ananassa HOM05D005133 ORTHO05D006685 2.0e-202 709.1 441 93.7
RcHm_v2.0_Chr1g0358181 Rosa chinensis HOM05D005133 ORTHO05D006685 2.9e-177 625.5 432 83.3
Prupe.2G179100 Prunus persica HOM05D005133 ORTHO05D006685 2.3e-158 562.8 433 71.4
MD07G1130200 Malus domestica HOM05D005133 ORTHO05D006685 2.5e-152 542.7 380 75.3
RcHm_v2.0_Chr1g0357891 Rosa chinensis HOM05D005133 ORTHO05D006685 1.7e-137 493.4 384 78.1
Gohir.D07G145800 Gossypium hirsutum HOM05D005133 ORTHO05D006685 9.7e-133 477.6 430 61.2
Gorai.001G158000 Gossypium raimondii HOM05D005133 ORTHO05D006685 9.7e-133 477.6 430 61.2
Thecc.01G351000 Theobroma cacao HOM05D005133 ORTHO05D006685 1.3e-132 477.2 430 61.4
Dinv43872 Davidia involucrata HOM05D005133 ORTHO05D006685 9.1e-131 471.1 386 64.8
Duzib133G0222 Durio zibethinus HOM05D005133 ORTHO05D006685 5.9e-130 468.4 429 59.7
Atru.chr5.593 Acer truncatum HOM05D005133 ORTHO05D006685 1.9e-128 463.4 440 59.3
CiPaw.02G036200 Carya illinoinensis HOM05D005133 ORTHO05D006685 1.9e-128 463.4 426 59.9
Cfa007878 Carpinus fangiana HOM05D005133 ORTHO05D006685 2.7e-127 459.5 437 59.0
Dinv32531 Davidia involucrata HOM05D005133 ORTHO05D006685 2.7e-127 459.5 386 64.5
Lj7C506T5 Lonicera japonica HOM05D005133 ORTHO05D006685 1.0e-126 457.6 378 65.1
Haze_14198 Corylus avellana HOM05D005133 ORTHO05D006685 1.2e-125 454.1 437 58.8
CSS0009332 Camellia sinensis var. sinensis HOM05D005133 ORTHO05D006685 2.6e-125 453.0 385 64.2
GSVIVG01027010001 Vitis vinifera HOM05D005133 ORTHO05D006685 5.7e-125 451.8 435 58.9
Ciclev10020434m.g Citrus clementina HOM05D005133 ORTHO05D006685 1.4e-123 447.2 392 64.0
Actinidia20170 Actinidia chinensis HOM05D005133 ORTHO05D006685 2.4e-123 446.4 436 57.8
Peaxi162Scf00020g01713 Petunia axillaris HOM05D005133 ORTHO05D006685 9.1e-123 444.5 385 62.9
Cpa.g.sc11.53 Carica papaya HOM05D005133 ORTHO05D006685 5.9e-122 441.8 431 58.5
QL07p038619 Quercus lobata HOM05D005133 ORTHO05D006685 1.7e-121 440.3 435 57.7
Rhsim07G0009300 Rhododendron simsii HOM05D005133 ORTHO05D006685 1.9e-120 436.8 433 55.7
TAR375G0148 Trochodendron aralioides HOM05D005133 ORTHO05D006685 5.5e-120 435.3 386 60.4
Manes.01G251600 Manihot esculenta HOM05D005133 ORTHO05D006685 7.2e-120 434.9 433 57.3
Potri.014G091400 Populus trichocarpa HOM05D005133 ORTHO05D006685 1.6e-119 433.7 428 57.9
ClCG05G014200 Citrullus lanatus HOM05D005133 ORTHO05D006685 2.8e-119 433.0 430 56.0
CSS0040148 Camellia sinensis var. sinensis HOM05D005133 ORTHO05D006685 1.0e-118 431.0 386 61.1
arahy.Tifrunner.gnm1.ann1.YZ0HQS Arachis hypogaea HOM05D005133 ORTHO05D006685 2.3e-118 429.9 434 56.2
CSS0000155 Camellia sinensis var. sinensis HOM05D005133 ORTHO05D006685 4.0e-118 429.1 374 63.1
Nitab4.5_0003501g0010 Nicotiana tabacum HOM05D005133 ORTHO05D006685 6.8e-118 428.3 386 60.4
arahy.Tifrunner.gnm1.ann1.ZNWN3Y Arachis hypogaea HOM05D005133 ORTHO05D006685 2.0e-117 426.8 436 55.7
Sed0023612 Sechium edule HOM05D005133 ORTHO05D006685 3.4e-117 426.0 437 54.9
DCAR_025229 Daucus carota HOM05D005133 ORTHO05D006685 4.4e-117 425.6 382 61.0
arahy.Tifrunner.gnm1.ann1.JRPH7J Arachis hypogaea HOM05D005133 ORTHO05D006685 5.7e-117 425.2 436 55.3
MSTRG.20869 Avicennia marina HOM05D005133 ORTHO05D006685 5.7e-117 425.2 383 59.0
LjContig00310g0005517 Lotus japonicus HOM05D005133 ORTHO05D006685 1.3e-116 424.1 385 59.5
RcHm_v2.0_Chr1g0358091 Rosa chinensis HOM05D005133 ORTHO05D006685 2.8e-116 422.9 294 79.6
COL.COLO4_06373 Corchorus olitorius HOM05D005133 ORTHO05D006685 8.3e-116 421.4 340 65.9
TPR.G34211 Trifolium pratense HOM05D005133 ORTHO05D006685 8.3e-116 421.4 385 58.7
Migut.H02011 Erythranthe guttata HOM05D005133 ORTHO05D006685 1.1e-115 421.0 435 55.4
CsaV3_3G008530 Cucumis sativus L. HOM05D005133 ORTHO05D006685 1.4e-115 420.6 384 60.9
Cc06_g17440 Coffea canephora HOM05D005133 ORTHO05D006685 3.1e-115 419.5 429 53.8
Cfa003860 Carpinus fangiana HOM05D005133 ORTHO05D006685 7.0e-115 418.3 354 65.5
MELO3C006074.2 Cucumis melo HOM05D005133 ORTHO05D006685 9.2e-115 417.9 451 54.3
Migut.B01807 Erythranthe guttata HOM05D005133 ORTHO05D006685 1.2e-114 417.5 432 55.1
Solyc01g095230.4 Solanum lycopersicum HOM05D005133 ORTHO05D006685 7.8e-114 414.8 388 60.1
VMungo1127G1104 Vigna mungo HOM05D005133 ORTHO05D006685 7.8e-114 414.8 384 59.1
PGR031G0061 Punica granatum HOM05D005133 ORTHO05D006685 1.0e-113 414.5 429 54.1
Migut.B01808 Erythranthe guttata HOM05D005133 ORTHO05D006685 1.7e-113 413.7 432 54.2
Haze_15576 Corylus avellana HOM05D005133 ORTHO05D006685 2.3e-113 413.3 437 54.7
Psat7g208960 Pisum sativum HOM05D005133 ORTHO05D006685 2.3e-113 413.3 384 57.8
HanXRQChr17g0562291 Helianthus annuus HOM05D005133 ORTHO05D006685 2.9e-113 412.9 386 58.8
Nn7g37315 Nelumbo nucifera HOM05D005133 ORTHO05D006685 1.1e-112 411.0 387 57.9
Sopen01g039020 Solanum pennellii HOM05D005133 ORTHO05D006685 1.9e-112 410.2 388 59.8
Aqoxy3G00498 Aquilegia oxysepala HOM05D005133 ORTHO05D006685 9.5e-112 407.9 388 58.5
SalBow3G2243 Salvia bowleyana HOM05D005133 ORTHO05D006685 2.1e-111 406.8 407 56.3
TWI34G1432 Tripterygium wilfordii HOM05D005133 ORTHO05D006685 2.8e-111 406.4 439 54.2
Phvul.011G052300 Phaseolus vulgaris HOM05D005133 ORTHO05D006685 4.7e-111 405.6 386 58.5
Lalb_Chr19g0138411 Lupinus albus HOM05D005133 ORTHO05D006685 8.0e-111 404.8 382 59.4
PGSC0003DMG401000198 Solanum tuberosum HOM05D005133 ORTHO05D006685 1.0e-110 404.4 385 58.4
Ca_20805_v3 Cicer arietinum L. HOM05D005133 ORTHO05D006685 1.8e-110 403.7 384 57.3
PSO135G0656 Papaver somniferum HOM05D005133 ORTHO05D006685 1.5e-109 400.6 383 56.1
SGA_v2.0_scaffold95G28800 Striga asiatica HOM05D003721 ORTHO05D004303 1.3e-108 397.5 384 57.0
Haze_15581 Corylus avellana HOM05D005133 ORTHO05D006685 3.7e-108 396.0 435 53.8
CANSAT01G0674 Cannabis sativa HOM05D005133 ORTHO05D006685 4.9e-108 395.6 404 58.2
Sabra14G0066300 Salix brachista HOM05D005133 ORTHO05D006685 6.4e-108 395.2 473 51.0
EL10Ac1g00344 Beta vulgaris HOM05D005133 ORTHO05D006685 1.4e-107 394.0 436 52.5
Glyma.12G050200 Glycine max HOM05D005133 ORTHO05D006685 5.4e-107 392.1 357 60.5
Medtr4g068010 Medicago truncatula HOM05D005133 ORTHO05D006685 9.2e-107 391.3 382 55.2
SalBow1G3823 Salvia bowleyana HOM05D005133 ORTHO05D006685 6.0e-106 388.7 362 59.7
Oeu015214.1 Olea europaea HOM05D005133 ORTHO05D006685 7.8e-106 388.3 482 48.1
Gohir.A07G140500 Gossypium hirsutum HOM05D005133 ORTHO05D006685 4.3e-104 382.5 395 56.7
Sc01g0003150 Simmondsia chinensis HOM05D005133 ORTHO05D006685 8.0e-103 378.3 444 51.8
unitig_0.g335 Utricularia gibba HOM05D005133 ORTHO05D006685 1.4e-102 377.5 380 55.3
ECA234G4221 Erigeron canadensis HOM05D005133 ORTHO05D006685 1.7e-100 370.5 382 54.2
Nitab4.5_0000915g0010 Nicotiana tabacum HOM05D005133 ORTHO05D006685 2.2e-100 370.2 359 56.8
AUR62022626 Chenopodium quinoa HOM05D005133 ORTHO05D006685 1.4e-99 367.5 422 52.6
vmacro20884 Vaccinium macrocarpon HOM05D005133 ORTHO05D006685 1.6e-98 364.0 401 53.4
Hund27238 Selenicereus undatus HOM05D005133 ORTHO05D006685 1.3e-97 360.9 446 50.9
CAN.G78.137 Capsicum annuum HOM05D005133 ORTHO05D006685 8.6e-97 358.2 386 52.8
ATR0626G352 Amborella trichopoda HOM05D005133 ORTHO05D006685 1.2e-95 354.4 406 51.7
Aa31LG1G27580 Aethionema arabicum HOM05D005133 ORTHO05D006685 1.6e-95 354.0 430 49.5
AUR62004420 Chenopodium quinoa HOM05D005133 ORTHO05D006685 2.1e-95 353.6 419 52.7
THA.LOC104817324 Tarenaya hassleriana HOM05D005133 ORTHO05D006685 2.8e-95 353.2 430 48.4
Lsat_1_v5_gn_4_34900 Lactuca sativa HOM05D005133 ORTHO05D006685 3.6e-95 352.8 432 48.1
Eucgr.J01063 Eucalyptus grandis HOM05D005133 ORTHO05D006685 2.3e-94 350.1 386 50.8
C04p01840 Brassica napus HOM05D005133 ORTHO05D006685 1.2e-93 347.8 427 48.0
BcaC02g12707 Brassica carinata HOM05D005133 ORTHO05D006685 7.5e-93 345.1 428 48.4
BcaC02g12500 Brassica carinata HOM05D005133 ORTHO05D006685 9.9e-93 344.7 427 48.2
RcHm_v2.0_Chr1g0358051 Rosa chinensis HOM05D005133 ORTHO05D006685 1.3e-92 344.4 364 60.2
A05p01630 Brassica napus HOM05D005133 ORTHO05D006685 3.7e-92 342.8 428 47.2
BraA05t19159Z Brassica rapa HOM05D005133 ORTHO05D006685 6.4e-92 342.0 428 47.0
AL4G45460 Arabidopsis lyrata HOM05D005133 ORTHO05D006685 9.2e-91 338.2 428 47.4
Zm00001eb339090 Zea mays HOM05D005133 ORTHO05D006685 1.6e-90 337.4 397 50.4
Sp5g32810 Schrenkiella parvula HOM05D005133 ORTHO05D006685 7.8e-90 335.1 429 46.4
Os01g0226500 Oryza sativa ssp. japonica HOM05D005133 ORTHO05D006685 1.1e-88 331.3 393 48.9
Thhalv10028732m.g Eutrema salsugineum HOM05D005133 ORTHO05D006685 3.1e-86 323.2 425 45.9
vmacro13220 Vaccinium macrocarpon HOM05D005133 ORTHO05D006685 6.8e-86 322.0 327 56.6
Thhalv10001493m.g Eutrema salsugineum HOM05D005133 ORTHO05D006685 1.2e-85 321.2 429 44.5
Carub.0004s2888 Capsella rubella HOM05D005133 ORTHO05D006685 8.4e-84 315.1 428 44.9
MBI16_g41624_MAGBIO Magnolia biondii HOM05D005133 ORTHO05D006685 6.6e-81 305.4 388 48.2
CARHR141470 Cardamine hirsuta HOM05D005133 ORTHO05D006685 1.8e-78 297.4 457 43.1
AT2G46200 Arabidopsis thaliana HOM05D005133 ORTHO05D006685 1.9e-75 287.3 390 45.4
vmacro22850 Vaccinium macrocarpon HOM05D005133 ORTHO05D006685 1.7e-68 264.2 350 48.3
Ah.05g180080 Amaranthus hybridus HOM05D005133 ORTHO05D006685 1.2e-66 258.1 432 41.9
Pp3c4_26280 Physcomitrium patens HOM05D005133 ORTHO05D006685 1.1e-62 245.0 313 45.7
HPP92_023966 Vanilla planifolia HOM05D005133 ORTHO05D006685 2.6e-61 240.4 315 48.6
PSO478G1127 Papaver somniferum HOM05D005133 ORTHO05D006685 5.7e-56 222.6 270 52.6
PSO384G2230 Papaver somniferum HOM05D005133 ORTHO05D006685 6.2e-55 219.2 218 56.4
CDE09G0708 Ceratophyllum demersum HOM05D005133 ORTHO05D006685 3.1e-54 216.9 318 44.3
Mapoly0001s0322 Marchantia polymorpha HOM05D005133 ORTHO05D006685 5.3e-54 216.1 411 37.5
arahy.Tifrunner.gnm1.ann1.Z00T6Z Arachis hypogaea HOM05D005133 ORTHO05D006685 2.5e-51 207.2 247 49.8
FAN03G0151 Fragaria x ananassa HOM05D005133 ORTHO05D006685 6.1e-42 176.0 133 72.2
AagrBONN_evm.TU.Sc2ySwM_344.4499 Anthoceros agrestis HOM05D005133 ORTHO05D006685 6.9e-38 162.5 301 37.9
FvH4_2g33570 Fragaria vesca HOM05D000073 ORTHO05D015767 8.8e-33 145.6 87 92.0
Zm00001eb201120 Zea mays HOM05D005133 ORTHO05D006685 2.8e-31 140.6 139 56.1
Zm00001eb407270 Zea mays HOM05D005133 ORTHO05D006685 2.8e-31 140.6 139 56.1
Gohir.A03G093200 Gossypium hirsutum HOM05D005133 ORTHO05D006685 8.5e-28 129.0 190 45.8
SHI13349 Sapria himalayana HOM05D005133 ORTHO05D006685 1.5e-27 128.3 141 51.8
RcHm_v2.0_Chr1g0358101 Rosa chinensis HOM05D004139 ORTHO05D004873 4.2e-27 126.7 129 72.9
SMO239G0112 Selaginella moellendorffii HOM05D005133 ORTHO05D006685 1.4e-25 121.7 356 31.2
CBR_g45167 Chara braunii HOM05D005133 ORTHO05D006685 1.7e-23 114.8 296 29.7
vmacro01745 Vaccinium macrocarpon HOM05D005133 ORTHO05D006685 2.2e-20 104.4 144 45.1
Glyma.11G125567 Glycine max HOM05D005133 ORTHO05D006685 2.5e-19 100.9 155 38.1
HanXRQChr04g0107751 Helianthus annuus HOM05D005133 ORTHO05D006685 9.4e-19 99.0 96 63.5
Rhsim01G0168000 Rhododendron simsii HOM05D005133 ORTHO05D006685 5.7e-16 89.7 70 70.0
AUR62025074 Chenopodium quinoa HOM05D005133 ORTHO05D006685 1.8e-14 84.7 65 69.2
C04p01870 Brassica napus HOM05D005133 ORTHO05D006685 2.5e-11 74.3 39 71.8
SMO117G0103 Selaginella moellendorffii HOM05D005133 ORTHO05D006685 1.2e-10 72.0 181 34.3
SMO114G0022 Selaginella moellendorffii HOM05D005133 ORTHO05D006685 4.7e-10 70.1 109 41.3


User provided reference genes

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