Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN06G1763 Fragaria x ananassa HOM05D001925 ORTHO05D005701 1.1e-306 1055.8 558 100.0
FAN06G3551 Fragaria x ananassa HOM05D001925 ORTHO05D005701 5.3e-304 1047.0 558 99.3
FAN03G1293 Fragaria x ananassa HOM05D001925 ORTHO05D005701 2.6e-303 1044.6 558 98.7
FvH4_7g14490 Fragaria vesca HOM05D001925 ORTHO05D005701 1.4e-301 1038.9 583 95.2
FAN10G1478 Fragaria x ananassa HOM05D001925 ORTHO05D005701 2.3e-299 1031.6 558 97.8
FAN10G3665 Fragaria x ananassa HOM05D001925 ORTHO05D005701 3.0e-299 1031.2 558 97.7
FAN01G0375 Fragaria x ananassa HOM05D001925 ORTHO05D005701 7.9e-292 1006.5 559 95.7
RcHm_v2.0_Chr1g0355901 Rosa chinensis HOM05D001925 ORTHO05D005701 2.1e-276 955.3 583 88.3
RcHm_v2.0_Chr2g0161261 Rosa chinensis HOM05D001925 ORTHO05D005701 5.0e-270 934.1 583 87.3
MD01G1065000 Malus domestica HOM05D001925 ORTHO05D005701 3.3e-213 745.3 517 73.3
Prupe.2G172000 Prunus persica HOM05D001925 ORTHO05D005701 1.7e-209 733.0 504 74.6
CiPaw.01G062800 Carya illinoinensis HOM05D001925 ORTHO05D005701 1.0e-206 723.8 585 65.5
Cfa003907 Carpinus fangiana HOM05D001925 ORTHO05D005701 2.3e-198 696.0 584 63.2
Haze_15511 Corylus avellana HOM05D001925 ORTHO05D005701 3.6e-196 688.7 584 62.7
QL04p053597 Quercus lobata HOM05D001925 ORTHO05D005701 5.8e-194 681.4 583 62.6
CANSAT56G3724 Cannabis sativa HOM05D001925 ORTHO05D005701 4.6e-191 671.8 583 62.1
vmacro13268 Vaccinium macrocarpon HOM05D001925 ORTHO05D005701 1.0e-190 670.6 585 60.3
GSVIVG01008477001 Vitis vinifera HOM05D001925 ORTHO05D005701 9.6e-189 664.1 583 61.2
Actinidia10039 Actinidia chinensis HOM05D001925 ORTHO05D005701 1.4e-187 660.2 517 64.4
Rhsim07G0013900 Rhododendron simsii HOM05D001925 ORTHO05D005701 2.4e-187 659.4 585 59.3
Lj1g0000866 Lotus japonicus HOM05D001925 ORTHO05D005701 1.0e-185 654.1 520 63.7
Glyma.18G234000 Glycine max HOM05D001925 ORTHO05D005701 2.2e-185 652.9 520 64.6
Duzib138G1334 Durio zibethinus HOM05D001925 ORTHO05D005701 3.8e-185 652.1 520 64.6
Potri.014G085900 Populus trichocarpa HOM05D001925 ORTHO05D005701 4.9e-185 651.7 584 61.1
Sabra14G0062200 Salix brachista HOM05D001925 ORTHO05D005701 5.5e-184 648.3 584 61.1
CSS0009302 Camellia sinensis var. sinensis HOM05D001925 ORTHO05D005701 7.1e-184 647.9 586 59.0
CSS0022743 Camellia sinensis var. sinensis HOM05D001925 ORTHO05D005701 7.1e-184 647.9 586 59.0
Ca_07928_v3 Cicer arietinum L. HOM05D001925 ORTHO05D005701 7.9e-183 644.4 521 62.6
VMungo1383G1901 Vigna mungo HOM05D001925 ORTHO05D005701 7.9e-183 644.4 520 63.7
Thecc.01G357800 Theobroma cacao HOM05D001925 ORTHO05D005701 1.0e-182 644.0 521 65.6
arahy.Tifrunner.gnm1.ann1.69YTHK Arachis hypogaea HOM05D001925 ORTHO05D005701 1.3e-182 643.7 519 63.0
Psat4g001160 Pisum sativum HOM05D001925 ORTHO05D005701 1.3e-182 643.7 522 61.7
Manes.05G033300 Manihot esculenta HOM05D001925 ORTHO05D005701 5.1e-182 641.7 584 59.8
Medtr7g077840 Medicago truncatula HOM05D001925 ORTHO05D005701 5.1e-182 641.7 586 58.5
Lj6A578T43 Lonicera japonica HOM05D001925 ORTHO05D005701 2.5e-181 639.4 591 59.9
TAR636G2317 Trochodendron aralioides HOM05D001925 ORTHO05D005701 4.3e-181 638.6 526 63.3
Atru.chr5.509 Acer truncatum HOM05D001925 ORTHO05D005701 5.7e-181 638.3 521 63.7
Gohir.A11G089700 Gossypium hirsutum HOM05D001925 ORTHO05D005701 9.6e-181 637.5 584 58.6
Lj6A572T62 Lonicera japonica HOM05D001925 ORTHO05D005701 1.6e-180 636.7 591 59.7
Phvul.008G061800 Phaseolus vulgaris HOM05D001925 ORTHO05D005701 1.6e-180 636.7 520 63.7
Ciclev10019660m.g Citrus clementina HOM05D001925 ORTHO05D005701 2.4e-179 632.9 582 59.1
Gorai.007G100400 Gossypium raimondii HOM05D001925 ORTHO05D005701 6.9e-179 631.3 584 58.4
Cpa.g.sc11.17 Carica papaya HOM05D001925 ORTHO05D005701 3.4e-178 629.0 583 56.4
COL.COLO4_12725 Corchorus olitorius HOM05D001925 ORTHO05D005701 3.4e-178 629.0 520 63.8
Gohir.D11G094000 Gossypium hirsutum HOM05D001925 ORTHO05D005701 3.4e-178 629.0 584 58.6
MELO3C021204.2 Cucumis melo HOM05D001925 ORTHO05D005701 9.3e-176 620.9 503 63.4
ClCG06G003620 Citrullus lanatus HOM05D001925 ORTHO05D005701 3.0e-174 615.9 503 63.0
TWI73G0882 Tripterygium wilfordii HOM05D001925 ORTHO05D005701 1.5e-173 613.6 516 60.3
Nitab4.5_0000583g0200 Nicotiana tabacum HOM05D001925 ORTHO05D005701 1.9e-173 613.2 512 60.5
Nn6g33390 Nelumbo nucifera HOM05D001925 ORTHO05D005701 2.5e-173 612.8 520 60.2
THA.LOC104825846 Tarenaya hassleriana HOM05D001925 ORTHO05D005701 3.3e-173 612.5 519 61.5
Sed0000605 Sechium edule HOM05D001925 ORTHO05D005701 5.7e-173 611.7 503 62.8
Eucgr.L01587 Eucalyptus grandis HOM05D001925 ORTHO05D005701 9.7e-173 610.9 520 61.0
arahy.Tifrunner.gnm1.ann1.9GVB5D Arachis hypogaea HOM05D001925 ORTHO05D005701 8.2e-172 607.8 525 60.8
arahy.Tifrunner.gnm1.ann1.NC5V2N Arachis hypogaea HOM05D001925 ORTHO05D005701 1.1e-171 607.4 525 61.0
Cc02_g38160 Coffea canephora HOM05D001925 ORTHO05D005701 1.8e-171 606.7 520 61.3
Migut.B01766 Erythranthe guttata HOM05D001925 ORTHO05D005701 4.1e-171 605.5 514 60.3
Peaxi162Scf00020g00723 Petunia axillaris HOM05D001925 ORTHO05D005701 4.1e-171 605.5 515 61.0
CAN.G78.90 Capsicum annuum HOM05D001925 ORTHO05D005701 3.4e-170 602.4 516 60.1
Lalb_Chr13g0304081 Lupinus albus HOM05D001925 ORTHO05D005701 5.9e-170 601.7 520 59.6
DCAR_007446 Daucus carota HOM05D001925 ORTHO05D005701 4.2e-168 595.5 519 62.8
Oeu015817.1 Olea europaea HOM05D001925 ORTHO05D005701 2.1e-167 593.2 510 60.0
SGA_v2.0_scaffold4G02302 Striga asiatica HOM05D001925 ORTHO05D005701 2.7e-167 592.8 505 61.0
MBI04_g28752_MAGBIO Magnolia biondii HOM05D001925 ORTHO05D005701 4.6e-167 592.0 508 60.4
Sopen01g038540 Solanum pennellii HOM05D001925 ORTHO05D005701 6.7e-166 588.2 502 60.2
PGSC0003DMG400000174 Solanum tuberosum HOM05D001925 ORTHO05D005701 1.5e-165 587.0 501 60.1
Solyc01g094760.3 Solanum lycopersicum HOM05D001925 ORTHO05D005701 2.5e-165 586.3 502 60.2
HanXRQChr04g0121151 Helianthus annuus HOM05D001925 ORTHO05D005701 9.7e-165 584.3 586 54.3
Lj7A511T78 Lonicera japonica HOM05D001925 ORTHO05D005701 1.1e-163 580.9 504 61.7
Glyma.09G258700 Glycine max HOM05D001925 ORTHO05D005701 1.8e-163 580.1 520 59.4
SalBow3G0216 Salvia bowleyana HOM05D001925 ORTHO05D005701 3.1e-163 579.3 498 60.2
AL7G22330 Arabidopsis lyrata HOM05D001925 ORTHO05D005701 5.9e-162 575.1 518 57.5
Eucgr.D01236 Eucalyptus grandis HOM05D001925 ORTHO05D005701 5.9e-162 575.1 520 58.7
TPR.G37845 Trifolium pratense HOM05D001925 ORTHO05D005701 2.2e-161 573.2 585 55.0
PGR004G0833 Punica granatum HOM05D001925 ORTHO05D005701 2.9e-161 572.8 585 53.8
Thhalv10005869m.g Eutrema salsugineum HOM05D001925 ORTHO05D005701 6.5e-161 571.6 519 57.8
AT4G29910 Arabidopsis thaliana HOM05D001925 ORTHO05D005701 3.2e-160 569.3 516 57.4
ECA236G3836 Erigeron canadensis HOM05D001925 ORTHO05D005701 4.2e-160 568.9 504 58.3
Nitab4.5_0006018g0050 Nicotiana tabacum HOM05D001925 ORTHO05D005701 5.5e-160 568.5 485 59.8
CARHR237820 Cardamine hirsuta HOM05D001925 ORTHO05D005701 1.2e-159 567.4 518 57.7
Sp5g05460 Schrenkiella parvula HOM05D001925 ORTHO05D005701 1.8e-158 563.5 522 56.7
BcaB02g07622 Brassica carinata HOM05D001925 ORTHO05D005701 1.5e-157 560.5 516 56.4
BraA07t29988Z Brassica rapa HOM05D001925 ORTHO05D005701 2.0e-157 560.1 505 56.8
Aqoxy2G04021 Aquilegia oxysepala HOM05D001925 ORTHO05D005701 3.3e-157 559.3 522 54.4
A07p23240 Brassica napus HOM05D001925 ORTHO05D005701 3.3e-157 559.3 505 56.6
ATR0068G004 Amborella trichopoda HOM05D001925 ORTHO05D005701 7.4e-157 558.1 489 57.7
BcaC08g44822 Brassica carinata HOM05D001925 ORTHO05D005701 7.4e-157 558.1 506 56.7
C06p24120 Brassica napus HOM05D001925 ORTHO05D005701 8.2e-156 554.7 506 56.5
BolC6t37570H Brassica oleracea HOM05D001925 ORTHO05D005701 1.1e-155 554.3 506 56.5
Lsat_1_v5_gn_7_4881 Lactuca sativa HOM05D001925 ORTHO05D005701 5.9e-154 548.5 516 56.8
Hund16654 Selenicereus undatus HOM05D001925 ORTHO05D005701 3.0e-150 536.2 510 55.9
PSO384G0118 Papaver somniferum HOM05D001925 ORTHO05D005701 6.7e-150 535.0 587 54.5
BcaB02g07621 Brassica carinata HOM05D001925 ORTHO05D005701 1.5e-149 533.9 516 54.8
Ah.05g180520 Amaranthus hybridus HOM05D001925 ORTHO05D001453 9.7e-149 531.2 512 55.9
EL10Ac1g00402 Beta vulgaris HOM05D001925 ORTHO05D005701 2.2e-148 530.0 514 56.6
Aa31LG2G20640 Aethionema arabicum HOM05D001925 ORTHO05D005701 7.0e-147 525.0 520 53.8
CDE08G0676 Ceratophyllum demersum HOM05D001925 ORTHO05D005701 9.1e-147 524.6 576 52.1
Dinv43827 Davidia involucrata HOM05D001925 ORTHO05D005701 2.8e-140 503.1 398 64.6
AUR62022580 Chenopodium quinoa HOM05D001925 ORTHO05D005701 8.3e-140 501.5 523 52.2
AUR62004371 Chenopodium quinoa HOM05D001925 ORTHO05D005701 5.7e-133 478.8 531 49.5
Carub.0007s1073 Capsella rubella HOM05D001925 ORTHO05D005701 4.0e-126 456.1 408 58.3
CsaV3_6G000620 Cucumis sativus L. HOM05D001925 ORTHO05D005701 8.3e-124 448.4 381 59.6
Zm00001eb214490 Zea mays HOM05D001925 ORTHO05D005701 1.3e-116 424.5 502 47.6
Os03g0759500 Oryza sativa ssp. japonica HOM05D001925 ORTHO05D005701 1.2e-114 417.9 497 47.7
Sc01g0003490 Simmondsia chinensis HOM05D001925 ORTHO05D005701 1.3e-113 414.5 468 51.1
SEGI_03119 Sequoiadendron giganteum HOM05D001925 ORTHO05D005701 2.1e-111 407.1 602 39.7
PSO339G3045 Papaver somniferum HOM05D001925 ORTHO05D005701 6.8e-110 402.1 494 47.8
Carub.0002s1689 Capsella rubella HOM05D001925 ORTHO05D005701 1.5e-109 401.0 356 58.4
arahy.Tifrunner.gnm1.ann1.IR4EKV Arachis hypogaea HOM05D001925 ORTHO05D005701 3.5e-106 389.8 319 63.9
BcaC07g40027 Brassica carinata HOM05D001925 ORTHO05D005701 1.2e-98 364.8 405 48.6
Oeu050467.2 Olea europaea HOM05D001925 ORTHO05D005701 1.3e-97 361.3 511 44.2
arahy.Tifrunner.gnm1.ann1.SID920 Arachis hypogaea HOM05D001925 ORTHO05D005701 6.8e-94 349.0 403 50.1
ECA236G4017 Erigeron canadensis HOM05D001925 ORTHO05D005701 2.0e-93 347.4 307 59.3
HPP92_019868 Vanilla planifolia HOM05D001925 ORTHO05D005701 6.4e-92 342.4 353 52.7
SMO147G0283 Selaginella moellendorffii HOM05D001925 ORTHO05D005701 1.4e-91 341.3 516 38.4
AagrBONN_evm.TU.Sc2ySwM_368.2511 Anthoceros agrestis HOM05D001925 ORTHO05D005701 3.3e-88 330.1 490 39.8
MD07G1135400 Malus domestica HOM05D001925 ORTHO05D005701 4.8e-87 326.2 345 55.7
arahy.Tifrunner.gnm1.ann1.D25PMP Arachis hypogaea HOM05D001925 ORTHO05D005701 8.4e-84 315.5 377 48.8
Pp3c17_13600 Physcomitrium patens HOM05D001925 ORTHO05D005701 2.1e-82 310.8 513 37.4
Mapoly0177s0008 Marchantia polymorpha HOM05D001925 ORTHO05D005701 9.6e-80 302.0 503 37.2
Potri.001G135975 Populus trichocarpa HOM05D001925 ORTHO05D005701 1.3e-79 301.6 308 53.2
C08p32440 Brassica napus HOM05D001925 ORTHO05D005701 9.0e-78 295.4 478 39.3
BolC8t50859H Brassica oleracea HOM05D001925 ORTHO05D005701 4.5e-77 293.1 478 39.1
TPR.G26686 Trifolium pratense HOM05D001925 ORTHO05D005701 8.4e-60 235.7 273 50.2
FvH4_2g10060 Fragaria vesca HOM05D001925 ORTHO05D005701 1.9e-56 224.6 180 70.6
arahy.Tifrunner.gnm1.ann1.IM3547 Arachis hypogaea HOM05D001925 ORTHO05D005701 5.0e-52 209.9 204 59.3
arahy.Tifrunner.gnm1.ann1.FEJ64N Arachis hypogaea HOM05D001925 ORTHO05D005701 3.2e-51 207.2 238 54.2
Actinidia20895 Actinidia chinensis HOM05D001925 ORTHO05D005701 1.2e-50 205.3 195 52.3
FAN24G1219 Fragaria x ananassa HOM05D001925 ORTHO05D005701 1.4e-43 181.8 105 84.8
FAN22G1210 Fragaria x ananassa HOM05D001925 ORTHO05D005701 1.9e-43 181.4 126 92.9
Dinv43826 Davidia involucrata HOM05D001925 ORTHO05D005701 7.2e-43 179.5 111 81.1
BraA09t40455Z Brassica rapa HOM05D001925 ORTHO05D005701 1.7e-39 168.3 171 55.0
TPR.G16202 Trifolium pratense HOM05D001925 ORTHO05D005701 6.3e-39 166.4 123 65.9
FvH4_2g10061 Fragaria vesca HOM05D001925 ORTHO05D005701 1.4e-38 165.2 97 83.5
FAN15G3430 Fragaria x ananassa HOM05D001925 ORTHO05D005701 4.1e-38 163.7 104 76.9
CBR_g58810 Chara braunii HOM05D001925 ORTHO05D005701 4.2e-35 153.7 489 28.4
C06p24140 Brassica napus HOM05D001925 ORTHO05D005701 3.3e-32 144.1 113 63.7
BcaC08g44824 Brassica carinata HOM05D001925 ORTHO05D005701 3.8e-28 130.6 114 57.0
MCO11G226 Micromonas commoda HOM05D001925 ORTHO05D005701 8.5e-28 129.4 583 23.5
A09p50030 Brassica napus HOM05D001925 ORTHO05D005701 1.5e-27 128.6 88 69.3
A09p50040 Brassica napus HOM05D001925 ORTHO05D005701 7.2e-27 126.3 90 70.0
PRCOL_00005952 Prasinoderma coloniale HOM05D001925 ORTHO05D005701 1.5e-24 118.6 497 26.6
FAN27G0066 Fragaria x ananassa HOM05D001925 ORTHO05D005701 2.6e-24 117.9 108 82.4
Zm00001eb057980 Zea mays HOM05D001925 ORTHO05D005701 1.7e-23 115.2 196 38.3
arahy.Tifrunner.gnm1.ann1.ZHBQ27 Arachis hypogaea HOM05D002506 ORTHO05D002879 4.5e-21 107.1 88 60.2
MBI04_g47116_MAGBIO Magnolia biondii HOM05D001925 ORTHO05D005701 1.4e-17 95.5 109 45.0
FvH4_2g10051 Fragaria vesca HOM05D001925 ORTHO05D045705 7.5e-16 89.7 97 60.8
Cre07.g355200 Chlamydomonas reinhardtii HOM05D001925 ORTHO05D005701 2.0e-13 81.6 573 21.8
C09p49930 Brassica napus HOM05D001925 ORTHO05D039571 5.9e-13 80.1 122 39.3
Thhalv10027287m.g Eutrema salsugineum HOM05D001925 ORTHO05D005701 1.1e-11 75.9 95 42.1
BcaC07g40074 Brassica carinata HOM05D001925 ORTHO05D005701 1.2e-10 72.4 80 50.0
SGA_v2.0_scaffold2881G54235 Striga asiatica HOM05D001925 ORTHO05D005701 3.7e-07 60.8 72 44.4


User provided reference genes

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