Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN06G1700 Fragaria x ananassa HOM05D006036 ORTHO05D007736 9.7e-49 196.4 95 100.0
FAN10G0738 Fragaria x ananassa HOM05D006036 ORTHO05D007736 1.5e-46 189.1 95 98.9
FAN10G3538 Fragaria x ananassa HOM05D006036 ORTHO05D007736 1.5e-46 189.1 95 98.9
FAN03G0372 Fragaria x ananassa HOM05D006036 ORTHO05D007736 2.0e-46 188.7 95 97.9
RcHm_v2.0_Chr1g0350591 Rosa chinensis HOM05D006036 ORTHO05D007736 5.9e-46 187.2 95 96.8
FAN01G0425 Fragaria x ananassa HOM05D006036 ORTHO05D007736 1.7e-45 185.7 95 95.8
FvH4_7g11910 Fragaria vesca HOM05D006036 ORTHO05D007736 1.9e-44 182.2 95 97.9
Prupe.2G145700 Prunus persica HOM05D006036 ORTHO05D007736 3.3e-41 171.4 95 88.4
Gohir.A08G134500 Gossypium hirsutum HOM05D006036 ORTHO05D007736 5.7e-41 170.6 95 86.3
Thecc.01G376100 Theobroma cacao HOM05D006036 ORTHO05D007736 9.7e-41 169.9 95 84.2
Psat7g231640 Pisum sativum HOM05D006036 ORTHO05D007736 2.2e-40 168.7 95 84.2
Cfa001720 Carpinus fangiana HOM05D006036 ORTHO05D007736 3.7e-40 167.9 95 83.2
MD02G1204100 Malus domestica HOM05D006036 ORTHO05D007736 3.7e-40 167.9 95 87.4
Nn1g01232 Nelumbo nucifera HOM05D006036 ORTHO05D007736 6.3e-40 167.2 95 84.2
Haze_16816 Corylus avellana HOM05D006036 ORTHO05D007736 1.1e-39 166.4 95 84.2
QL08p052466 Quercus lobata HOM05D006036 ORTHO05D007736 1.4e-39 166.0 94 84.0
Cpa.g.sc349.4 Carica papaya HOM05D006036 ORTHO05D007736 3.1e-39 164.9 95 82.1
Eucgr.E01417 Eucalyptus grandis HOM05D006036 ORTHO05D007736 3.1e-39 164.9 94 83.0
TWI14G1308 Tripterygium wilfordii HOM05D006036 ORTHO05D007736 4.1e-39 164.5 95 83.2
Hund17020 Selenicereus undatus HOM05D006036 ORTHO05D007736 5.3e-39 164.1 95 80.0
CANSAT56G2189 Cannabis sativa HOM05D006036 ORTHO05D007736 6.9e-39 163.7 95 82.1
Ca_03013_v3 Cicer arietinum L. HOM05D006036 ORTHO05D007736 6.9e-39 163.7 95 78.9
CiPaw.01G261900 Carya illinoinensis HOM05D006036 ORTHO05D007736 9.1e-39 163.3 95 83.2
Glyma.01G142900 Glycine max HOM05D006036 ORTHO05D007736 9.1e-39 163.3 95 81.1
Glyma.03G023900 Glycine max HOM05D006036 ORTHO05D007736 9.1e-39 163.3 95 81.1
Ciclev10022362m.g Citrus clementina HOM05D006036 ORTHO05D007736 1.5e-38 162.5 95 83.2
Phvul.010G084400 Phaseolus vulgaris HOM05D006036 ORTHO05D007736 2.0e-38 162.2 95 81.1
Glyma.14G070200 Glycine max HOM05D006036 ORTHO05D007736 2.6e-38 161.8 95 80.0
Ah.16g109830 Amaranthus hybridus HOM05D006036 ORTHO05D007736 3.4e-38 161.4 91 82.4
Oeu037915.1 Olea europaea HOM05D006036 ORTHO05D007736 3.4e-38 161.4 95 80.0
Manes.05G045200 Manihot esculenta HOM05D006036 ORTHO05D007736 4.5e-38 161.0 95 83.2
Medtr4g023550 Medicago truncatula HOM05D006036 ORTHO05D007736 4.5e-38 161.0 93 79.6
Sed0014119 Sechium edule HOM05D006036 ORTHO05D007736 4.5e-38 161.0 95 80.0
GSVIVG01027612001 Vitis vinifera HOM05D006036 ORTHO05D007736 4.5e-38 161.0 95 81.1
Duzib133G1287 Durio zibethinus HOM05D006036 ORTHO05D007736 5.9e-38 160.6 95 80.0
VMungo0331G0186 Vigna mungo HOM05D006036 ORTHO05D007736 5.9e-38 160.6 95 80.0
EL10Ac1g00899 Beta vulgaris HOM05D006036 ORTHO05D007736 1.0e-37 159.8 95 78.9
MELO3C035247.2 Cucumis melo HOM05D006036 ORTHO05D007736 1.0e-37 159.8 95 80.0
Sc02g0002580 Simmondsia chinensis HOM05D006036 ORTHO05D007736 1.3e-37 159.5 95 78.9
ClCG06G000370 Citrullus lanatus HOM05D006036 ORTHO05D007736 2.9e-37 158.3 95 78.9
Peaxi162Scf00021g01720 Petunia axillaris HOM05D006036 ORTHO05D007736 2.9e-37 158.3 95 78.9
Sed0006891 Sechium edule HOM05D006036 ORTHO05D007736 2.9e-37 158.3 95 78.9
Solyc01g091360.4 Solanum lycopersicum HOM05D006036 ORTHO05D007736 2.9e-37 158.3 93 79.6
TPR.G9852 Trifolium pratense HOM05D006036 ORTHO05D007736 2.9e-37 158.3 93 79.6
Lj3g0008791 Lotus japonicus HOM05D006036 ORTHO05D007736 5.0e-37 157.5 95 77.9
VMungo0251G0926 Vigna mungo HOM05D006036 ORTHO05D007736 5.0e-37 157.5 95 78.9
AUR62004220 Chenopodium quinoa HOM05D006036 ORTHO05D007736 6.5e-37 157.1 95 77.9
AUR62013628 Chenopodium quinoa HOM05D006036 ORTHO05D007736 6.5e-37 157.1 95 76.8
PGR042G0035 Punica granatum HOM05D006036 ORTHO05D007736 6.5e-37 157.1 94 79.8
SalBow5G0783 Salvia bowleyana HOM05D006036 ORTHO05D007736 6.5e-37 157.1 95 78.9
SalBow5G3583 Salvia bowleyana HOM05D006036 ORTHO05D007736 6.5e-37 157.1 95 78.9
Aqoxy7G00627 Aquilegia oxysepala HOM05D006036 ORTHO05D007736 8.5e-37 156.8 95 77.9
Lalb_Chr07g0189801 Lupinus albus HOM05D006036 ORTHO05D007736 8.5e-37 156.8 95 76.8
CsaV3_6G006160 Cucumis sativus L. HOM05D006036 ORTHO05D007736 1.4e-36 156.0 95 77.9
Nitab4.5_0005372g0020 Nicotiana tabacum HOM05D006036 ORTHO05D007736 1.4e-36 156.0 93 78.5
Sopen01g037100 Solanum pennellii HOM05D006036 ORTHO05D007736 1.4e-36 156.0 93 78.5
Actinidia12688 Actinidia chinensis HOM05D006036 ORTHO05D007736 3.2e-36 154.8 95 80.0
BcaC07g40602 Brassica carinata HOM05D006036 ORTHO05D007736 7.2e-36 153.7 95 80.0
C08p35770 Brassica napus HOM05D006036 ORTHO05D007736 7.2e-36 153.7 95 80.0
BolC8t51167H Brassica oleracea HOM05D006036 ORTHO05D007736 7.2e-36 153.7 95 80.0
Rhsim01G0147400 Rhododendron simsii HOM05D006036 ORTHO05D007736 7.2e-36 153.7 95 80.0
MSTRG.4890 Avicennia marina HOM05D006036 ORTHO05D007736 9.4e-36 153.3 95 75.8
CARHR171200 Cardamine hirsuta HOM05D006036 ORTHO05D007736 9.4e-36 153.3 95 80.0
Cc02_g36690 Coffea canephora HOM05D006036 ORTHO05D007736 9.4e-36 153.3 93 77.4
FAN06G2896 Fragaria x ananassa HOM05D006036 ORTHO05D007736 9.4e-36 153.3 77 98.7
unitig_8.g4983 Utricularia gibba HOM05D006036 ORTHO05D007736 1.2e-35 152.9 95 77.9
PGSC0003DMG400012774 Solanum tuberosum HOM05D006036 ORTHO05D007736 1.6e-35 152.5 93 77.4
Carub.0005s2756 Capsella rubella HOM05D006036 ORTHO05D007736 2.1e-35 152.1 95 78.9
Glyma.08G286100 Glycine max HOM05D006036 ORTHO05D007736 2.1e-35 152.1 92 78.3
vmacro21008 Vaccinium macrocarpon HOM05D006036 ORTHO05D007736 2.1e-35 152.1 95 78.9
A09p53070 Brassica napus HOM05D006036 ORTHO05D007736 2.7e-35 151.8 95 78.9
BraA09t40733Z Brassica rapa HOM05D006036 ORTHO05D007736 2.7e-35 151.8 95 78.9
MBI04_g35276_MAGBIO Magnolia biondii HOM05D006036 ORTHO05D007736 2.7e-35 151.8 104 71.2
AL5G43130 Arabidopsis lyrata HOM05D006036 ORTHO05D007736 3.6e-35 151.4 95 78.9
AT3G60810 Arabidopsis thaliana HOM05D006036 ORTHO05D007736 3.6e-35 151.4 95 78.9
CDE02G2016 Ceratophyllum demersum HOM05D006036 ORTHO05D007736 3.6e-35 151.4 95 77.9
Sp5g02440 Schrenkiella parvula HOM05D006036 ORTHO05D007736 3.6e-35 151.4 95 78.9
CSS0011162 Camellia sinensis var. sinensis HOM05D006036 ORTHO05D007736 4.7e-35 151.0 95 78.9
CSS0022013 Camellia sinensis var. sinensis HOM05D006036 ORTHO05D007736 4.7e-35 151.0 95 78.9
BcaC07g42642 Brassica carinata HOM05D006036 ORTHO05D007736 6.1e-35 150.6 95 77.9
Potri.002G148400 Populus trichocarpa HOM05D006036 ORTHO05D007736 7.9e-35 150.2 95 75.8
THA.LOC104802443 Tarenaya hassleriana HOM05D006036 ORTHO05D007736 1.0e-34 149.8 96 76.0
Aa31LG10G15050 Aethionema arabicum HOM05D006036 ORTHO05D007736 3.0e-34 148.3 95 76.8
HanXRQChr16g0520241 Helianthus annuus HOM05D006036 ORTHO05D007736 3.0e-34 148.3 95 74.7
Sabra02G0117300 Salix brachista HOM05D006036 ORTHO05D007736 3.9e-34 147.9 95 75.8
Sabra02G0115600 Salix brachista HOM05D006036 ORTHO05D007736 6.7e-34 147.1 95 75.8
CAN.G388.12 Capsicum annuum HOM05D006036 ORTHO05D007736 1.1e-33 146.4 93 73.1
Thhalv10006234m.g Eutrema salsugineum HOM05D006036 ORTHO05D007736 1.5e-33 146.0 95 78.9
arahy.Tifrunner.gnm1.ann1.B3VI1A Arachis hypogaea HOM05D006036 ORTHO05D007736 2.0e-33 145.6 95 74.7
arahy.Tifrunner.gnm1.ann1.Y8TVDJ Arachis hypogaea HOM05D006036 ORTHO05D007736 2.0e-33 145.6 95 74.7
ECA234G4399 Erigeron canadensis HOM05D006036 ORTHO05D007736 7.4e-33 143.7 95 72.6
Lsat_1_v5_gn_4_40940 Lactuca sativa HOM05D006036 ORTHO05D007736 1.3e-32 142.9 95 72.6
Dinv32378 Davidia involucrata HOM05D006036 ORTHO05D007736 3.7e-32 141.4 77 87.0
SEGI_01363 Sequoiadendron giganteum HOM05D006036 ORTHO05D007736 6.3e-32 140.6 90 74.4
DCAR_031531 Daucus carota HOM05D006036 ORTHO05D007736 8.2e-32 140.2 78 84.6
Ca_07819_v3 Cicer arietinum L. HOM05D006036 ORTHO05D007736 1.8e-31 139.0 96 68.8
Medtr7g074920 Medicago truncatula HOM05D006036 ORTHO05D007736 4.1e-31 137.9 94 68.1
Zm00001eb210410 Zea mays HOM05D006036 ORTHO05D007736 7.0e-31 137.1 95 66.3
Os03g0858700 Oryza sativa ssp. japonica HOM05D006036 ORTHO05D007736 1.2e-30 136.3 95 66.3
Atru.chr5.310 Acer truncatum HOM05D006036 ORTHO05D007736 2.6e-30 135.2 77 83.1
ATR0810G113 Amborella trichopoda HOM05D006036 ORTHO05D007736 3.5e-30 134.8 77 84.4
AagrBONN_evm.TU.Sc2ySwM_117.1558 Anthoceros agrestis HOM05D006036 ORTHO05D007736 1.7e-29 132.5 90 71.1
SMO143G0045 Selaginella moellendorffii HOM05D006036 ORTHO05D007736 1.7e-29 132.5 90 71.1
Lj9A569G50 Lonicera japonica HOM05D006036 ORTHO05D007736 2.2e-29 132.1 77 79.2
Mapoly0007s0216 Marchantia polymorpha HOM05D006036 ORTHO05D007736 2.9e-29 131.7 90 67.8
Pp3c23_9860 Physcomitrium patens HOM05D006036 ORTHO05D007736 7.2e-28 127.1 90 70.0
CBR_g54966 Chara braunii HOM05D006036 ORTHO05D007736 1.2e-27 126.3 84 72.6
vmacro21009 Vaccinium macrocarpon HOM05D006036 ORTHO05D007736 1.6e-27 125.9 77 79.2
Cre11.g468750 Chlamydomonas reinhardtii HOM05D006036 ORTHO05D007736 1.8e-26 122.5 90 64.4
Gorai.007G091200 Gossypium raimondii HOM05D001611 ORTHO05D001464 1.1e-23 113.2 71 76.1
Gohir.D11G085366 Gossypium hirsutum HOM05D001611 ORTHO05D001464 2.0e-22 109.0 71 73.2
PSO478G2400 Papaver somniferum HOM05D006036 ORTHO05D007736 2.5e-20 102.1 95 54.7
Hma1.2p1_1122F.1_g259290 Hydrangea macrophylla HOM05D006036 ORTHO05D007736 4.2e-20 101.3 55 80.0
Lalb_Chr03g0039551 Lupinus albus HOM05D006036 ORTHO05D007736 7.2e-20 100.5 69 65.2
PSO782G0421 Papaver somniferum HOM05D006036 ORTHO05D007736 7.2e-20 100.5 95 52.6
Lj1g0011795 Lotus japonicus HOM05D006036 ORTHO05D007736 6.1e-19 97.4 54 79.6
Gohir.D08G155400 Gossypium hirsutum HOM05D006036 ORTHO05D007736 1.2e-17 93.2 51 88.2
Ciclev10033315m.g Citrus clementina HOM05D006036 ORTHO05D007736 5.7e-17 90.9 55 80.0
SGA_v2.0_scaffold153G37014 Striga asiatica HOM05D006036 ORTHO05D001464 5.5e-12 74.3 45 71.1
Nitab4.5_0000457g0290 Nicotiana tabacum HOM05D006036 ORTHO05D007736 1.6e-11 72.8 38 78.9
MCO13G087 Micromonas commoda HOM05D006036 ORTHO05D007736 8.0e-11 70.5 96 45.8
Gorai.004G161600 Gossypium raimondii HOM05D006036 ORTHO05D007736 8.8e-10 67.0 51 68.6
COL.COLO4_12549 Corchorus olitorius HOM05D006036 ORTHO05D007736 1.1e-07 60.1 39 76.9


User provided reference genes

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