Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FvH4_7g10630 Fragaria vesca HOM05D004832 ORTHO05D005821 3.4e-89 331.6 167 100.0
FAN06G0284 Fragaria x ananassa HOM05D004832 ORTHO05D005821 3.4e-89 331.6 167 100.0
FAN06G1644 Fragaria x ananassa HOM05D004832 ORTHO05D005821 3.4e-89 331.6 167 100.0
RcHm_v2.0_Chr1g0348571 Rosa chinensis HOM05D004832 ORTHO05D005821 3.4e-89 331.6 167 100.0
FAN01G1609 Fragaria x ananassa HOM05D004832 ORTHO05D005821 1.3e-88 329.7 167 99.4
FAN03G2909 Fragaria x ananassa HOM05D004832 ORTHO05D005821 4.7e-83 311.2 191 85.3
MD07G1111400 Malus domestica HOM05D004832 ORTHO05D005821 8.6e-77 290.4 167 86.8
MD10G1232800 Malus domestica HOM05D004832 ORTHO05D005821 1.9e-76 289.3 167 86.2
Prupe.2G134800 Prunus persica HOM05D004832 ORTHO05D005821 3.8e-72 275.0 167 82.0
CiPaw.13G030400 Carya illinoinensis HOM05D004832 ORTHO05D005821 2.3e-69 265.8 167 78.4
ClCG05G000300 Citrullus lanatus HOM05D004832 ORTHO05D005821 1.9e-68 262.7 167 74.9
Lj9A562G31 Lonicera japonica HOM05D004832 ORTHO05D005821 2.5e-68 262.3 168 77.4
MELO3C005967.2 Cucumis melo HOM05D004832 ORTHO05D005821 4.3e-68 261.5 167 74.9
CSS0038442 Camellia sinensis var. sinensis HOM05D004832 ORTHO05D005821 9.6e-68 260.4 167 78.4
CsaV3_3G007460 Cucumis sativus L. HOM05D001289 ORTHO05D002298 9.6e-68 260.4 167 74.9
Atru.chr5.207 Acer truncatum HOM05D004832 ORTHO05D005821 2.1e-67 259.2 166 77.1
Thecc.01G386800 Theobroma cacao HOM05D004832 ORTHO05D005821 2.8e-67 258.8 165 78.2
Cfa011129 Carpinus fangiana HOM05D004832 ORTHO05D005821 4.8e-67 258.1 167 76.6
Glyma.16G097600 Glycine max HOM05D004832 ORTHO05D005821 6.2e-67 257.7 167 75.4
Manes.01G270800 Manihot esculenta HOM05D004832 ORTHO05D005821 6.2e-67 257.7 166 73.5
Phvul.010G055900 Phaseolus vulgaris HOM05D004832 ORTHO05D005821 8.1e-67 257.3 167 76.6
COL.COLO4_11958 Corchorus olitorius HOM05D004832 ORTHO05D005821 1.4e-66 256.5 165 78.2
ECA234G0521 Erigeron canadensis HOM05D004832 ORTHO05D005821 1.8e-66 256.1 167 76.6
Eucgr.D02506 Eucalyptus grandis HOM05D004832 ORTHO05D005821 3.1e-66 255.4 166 74.7
Aqoxy7G02831 Aquilegia oxysepala HOM05D004832 ORTHO05D005821 5.3e-66 254.6 167 74.9
Hma1.2p1_0341F.1_g130370 Hydrangea macrophylla HOM05D004832 ORTHO05D005821 5.3e-66 254.6 170 75.9
Gohir.A11G077700 Gossypium hirsutum HOM05D004832 ORTHO05D005821 6.9e-66 254.2 165 76.4
Lj3g0007809 Lotus japonicus HOM05D004832 ORTHO05D005821 1.2e-65 253.4 167 74.3
MBI04_g11708_MAGBIO Magnolia biondii HOM05D004832 ORTHO05D005821 1.2e-65 253.4 164 75.6
Sed0016485 Sechium edule HOM05D004832 ORTHO05D005821 1.2e-65 253.4 167 73.7
COL.COLO4_12459 Corchorus olitorius HOM05D004832 ORTHO05D005821 1.5e-65 253.1 165 76.4
Gorai.007G087800 Gossypium raimondii HOM05D004832 ORTHO05D005821 1.5e-65 253.1 165 75.8
GSVIVG01018202001 Vitis vinifera HOM05D004832 ORTHO05D005821 1.5e-65 253.1 163 76.7
Gohir.D11G082100 Gossypium hirsutum HOM05D004832 ORTHO05D005821 2.0e-65 252.7 165 75.8
Dinv43651 Davidia involucrata HOM05D004832 ORTHO05D005821 2.6e-65 252.3 166 75.3
Ciclev10022588m.g Citrus clementina HOM05D004832 ORTHO05D005821 3.4e-65 251.9 167 75.4
Lsat_1_v5_gn_4_43780 Lactuca sativa HOM05D004832 ORTHO05D005821 8.4e-64 247.3 162 75.3
arahy.Tifrunner.gnm1.ann1.W023QS Arachis hypogaea HOM05D004832 ORTHO05D005821 1.1e-63 246.9 167 73.1
vmacro00550 Vaccinium macrocarpon HOM05D004832 ORTHO05D005821 1.1e-63 246.9 193 68.4
DCAR_029781 Daucus carota HOM05D004832 ORTHO05D005821 1.9e-63 246.1 167 73.1
HanXRQChr16g0519281 Helianthus annuus HOM05D004832 ORTHO05D005821 1.9e-63 246.1 167 74.3
arahy.Tifrunner.gnm1.ann1.32ME5N Arachis hypogaea HOM05D004832 ORTHO05D005821 3.2e-63 245.4 167 72.5
arahy.Tifrunner.gnm1.ann1.88IY7S Arachis hypogaea HOM05D004832 ORTHO05D005821 3.2e-63 245.4 167 72.5
arahy.Tifrunner.gnm1.ann1.A6AVFI Arachis hypogaea HOM05D004832 ORTHO05D005821 3.2e-63 245.4 167 72.5
Sc08g0005120 Simmondsia chinensis HOM05D004832 ORTHO05D005821 3.2e-63 245.4 167 71.3
arahy.Tifrunner.gnm1.ann1.YIL91U Arachis hypogaea HOM05D004832 ORTHO05D005821 5.4e-63 244.6 163 73.6
Peaxi162Scf00377g00611 Petunia axillaris HOM05D004832 ORTHO05D005821 1.2e-62 243.4 166 73.5
HanXRQChr05g0138431 Helianthus annuus HOM05D004832 ORTHO05D005821 1.6e-62 243.0 166 72.9
Haze_02734 Corylus avellana HOM05D004832 ORTHO05D005821 2.1e-62 242.7 189 66.1
Migut.B01571 Erythranthe guttata HOM05D004832 ORTHO05D005821 2.1e-62 242.7 166 73.5
CANSAT64G0775 Cannabis sativa HOM05D004832 ORTHO05D005821 4.6e-62 241.5 162 73.5
Nn6g33924 Nelumbo nucifera HOM05D004832 ORTHO05D005821 4.6e-62 241.5 153 78.4
CAN.G899.18 Capsicum annuum HOM05D004832 ORTHO05D005821 6.0e-62 241.1 166 69.9
Nitab4.5_0000706g0140 Nicotiana tabacum HOM05D004832 ORTHO05D005821 6.0e-62 241.1 167 71.3
Lalb_Chr07g0195651 Lupinus albus HOM05D004832 ORTHO05D005821 1.8e-61 239.6 167 70.7
Medtr4g093680 Medicago truncatula HOM05D004832 ORTHO05D005821 3.0e-61 238.8 167 71.3
PSO063G5716 Papaver somniferum HOM05D004832 ORTHO05D005821 3.0e-61 238.8 167 69.5
MSTRG.17149 Avicennia marina HOM05D004832 ORTHO05D005821 3.9e-61 238.4 166 73.5
Psat2g165520 Pisum sativum HOM05D004832 ORTHO05D005821 3.9e-61 238.4 167 72.5
Hund06868 Selenicereus undatus HOM05D004832 ORTHO05D005821 5.1e-61 238.0 164 69.5
Sopen01g036450 Solanum pennellii HOM05D004832 ORTHO05D005821 6.7e-61 237.7 166 69.3
Cc02_g24530 Coffea canephora HOM05D004832 ORTHO05D005821 1.1e-60 236.9 166 71.7
Sabra02G0110600 Salix brachista HOM05D004832 ORTHO05D005821 1.1e-60 236.9 169 68.0
Potri.002G142000 Populus trichocarpa HOM05D004832 ORTHO05D005821 2.5e-60 235.7 169 67.5
PSO017G2958 Papaver somniferum HOM05D004832 ORTHO05D005821 4.3e-60 235.0 167 68.3
Potri.002G142100 Populus trichocarpa HOM05D004832 ORTHO05D005821 4.3e-60 235.0 169 66.9
SGA_v2.0_scaffold153G36948 Striga asiatica HOM05D004832 ORTHO05D005821 4.3e-60 235.0 166 71.1
Oeu061515.1 Olea europaea HOM05D004832 ORTHO05D005821 5.6e-60 234.6 166 68.7
SGA_v2.0_scaffold52G19196 Striga asiatica HOM05D004832 ORTHO05D005821 5.6e-60 234.6 166 71.1
Solyc01g090720.3 Solanum lycopersicum HOM05D004832 ORTHO05D005821 7.4e-60 234.2 166 68.1
Nitab4.5_0001823g0010 Nicotiana tabacum HOM05D004832 ORTHO05D005821 1.3e-59 233.4 166 69.9
arahy.Tifrunner.gnm1.ann1.84RPTF Arachis hypogaea HOM05D005553 ORTHO05D006866 1.6e-59 233.0 154 74.0
Ca_18388_v3 Cicer arietinum L. HOM05D004832 ORTHO05D005821 2.1e-59 232.6 167 69.5
Glyma.07G109700 Glycine max HOM05D004832 ORTHO05D005821 6.2e-59 231.1 149 75.2
Lj5g0022701 Lotus japonicus HOM05D004832 ORTHO05D005821 6.2e-59 231.1 168 69.6
ATR0317G035 Amborella trichopoda HOM05D004832 ORTHO05D005821 5.3e-58 228.0 159 71.7
Rhsim07G0033000 Rhododendron simsii HOM05D004832 ORTHO05D005821 1.2e-57 226.9 204 60.3
TPR.G2894 Trifolium pratense HOM05D004832 ORTHO05D005821 1.5e-57 226.5 163 68.7
Zm00001eb272690 Zea mays HOM05D004832 ORTHO05D005821 3.4e-57 225.3 166 62.7
Duzib138G0601 Durio zibethinus HOM05D004832 ORTHO05D005821 9.9e-57 223.8 138 79.0
HPP92_023799 Vanilla planifolia HOM05D004832 ORTHO05D005821 2.9e-56 222.2 167 62.9
VMungo0331G1454 Vigna mungo HOM05D004832 ORTHO05D005821 5.5e-55 218.0 142 76.1
Ah.03g133100 Amaranthus hybridus HOM05D004832 ORTHO05D005821 9.3e-55 217.2 137 73.7
PGR119G1038 Punica granatum HOM05D004832 ORTHO05D005821 5.1e-53 211.5 161 65.8
AUR62024291 Chenopodium quinoa HOM05D004832 ORTHO05D005821 1.1e-52 210.3 190 57.4
AL5G21320 Arabidopsis lyrata HOM05D004832 ORTHO05D005821 4.3e-52 208.4 165 60.6
THA.LOC104813152 Tarenaya hassleriana HOM05D004832 ORTHO05D005821 9.6e-52 207.2 139 69.8
C01p49120 Brassica napus HOM05D004832 ORTHO05D005821 1.3e-51 206.8 165 58.2
Carub.0003s1502 Capsella rubella HOM05D004832 ORTHO05D005821 1.3e-51 206.8 163 60.7
BolC1t04876H Brassica oleracea HOM05D004832 ORTHO05D005821 1.6e-51 206.5 165 58.2
A01p38670 Brassica napus HOM05D004832 ORTHO05D005821 2.1e-51 206.1 165 57.6
BraA01t03917Z Brassica rapa HOM05D004832 ORTHO05D005821 2.1e-51 206.1 165 57.6
Carub.0008s1260 Capsella rubella HOM05D004832 ORTHO05D005821 6.2e-51 204.5 163 59.5
MBI03_g13774_MAGBIO Magnolia biondii HOM05D004832 ORTHO05D005821 1.1e-50 203.8 174 63.2
Aa31LG8G2560 Aethionema arabicum HOM05D004832 ORTHO05D005821 1.8e-50 203.0 157 61.1
BcaB07g33539 Brassica carinata HOM05D004832 ORTHO05D005821 1.8e-50 203.0 165 59.4
AUR62035275 Chenopodium quinoa HOM05D004832 ORTHO05D005821 3.1e-50 202.2 128 73.4
AL3G27790 Arabidopsis lyrata HOM05D004832 ORTHO05D005821 5.3e-50 201.4 163 59.5
BcaC09g48497 Brassica carinata HOM05D004832 ORTHO05D005821 5.3e-50 201.4 165 57.0
AT3G15351 Arabidopsis thaliana HOM05D004832 ORTHO05D005821 3.4e-49 198.7 137 67.9
BcaC01g05853 Brassica carinata HOM05D004832 ORTHO05D005821 3.4e-49 198.7 150 60.0
QL04p035586 Quercus lobata HOM05D004832 ORTHO05D005821 3.4e-49 198.7 116 81.9
Thhalv10023724m.g Eutrema salsugineum HOM05D004832 ORTHO05D005821 4.5e-49 198.4 167 57.5
Thhalv10021656m.g Eutrema salsugineum HOM05D004832 ORTHO05D005821 1.3e-48 196.8 167 56.9
Thhalv10009904m.g Eutrema salsugineum HOM05D004832 ORTHO05D005821 1.7e-48 196.4 167 56.3
SEGI_17839 Sequoiadendron giganteum HOM05D004832 ORTHO05D005821 2.9e-48 195.7 163 59.5
DCAR_022632 Daucus carota HOM05D004832 ORTHO05D005821 3.8e-48 195.3 118 79.7
TAR629G1420 Trochodendron aralioides HOM05D004832 ORTHO05D005821 3.8e-48 195.3 122 77.9
CSS0042819 Camellia sinensis var. sinensis HOM05D004832 ORTHO05D005821 1.1e-47 193.7 117 82.1
Glyma.02G101600 Glycine max HOM05D004832 ORTHO05D005821 1.1e-47 193.7 126 73.8
Sp7g07030 Schrenkiella parvula HOM05D004832 ORTHO05D005821 1.9e-47 193.0 165 55.2
CDE06G2810 Ceratophyllum demersum HOM05D004832 ORTHO05D005821 2.5e-47 192.6 136 65.4
Thhalv10009807m.g Eutrema salsugineum HOM05D004832 ORTHO05D005821 3.2e-47 192.2 167 55.7
C03p21760 Brassica napus HOM05D004832 ORTHO05D005821 7.1e-47 191.0 137 62.8
Os07g0485600 Oryza sativa ssp. japonica HOM05D004832 ORTHO05D005821 7.1e-47 191.0 127 67.7
QL04p020302 Quercus lobata HOM05D004832 ORTHO05D005821 5.7e-44 181.4 116 75.0
QL04p046167 Quercus lobata HOM05D004832 ORTHO05D005821 1.6e-43 179.9 121 75.2
arahy.Tifrunner.gnm1.ann1.W1G7Z9 Arachis hypogaea HOM05D004832 ORTHO05D005821 9.0e-42 174.1 116 72.4
Psat5g158760 Pisum sativum HOM05D004832 ORTHO05D005821 3.2e-39 165.6 138 60.9
QL04p046254 Quercus lobata HOM05D003594 ORTHO05D004268 2.5e-36 156.0 88 84.1
Thhalv10009921m.g Eutrema salsugineum HOM05D004832 ORTHO05D005821 4.3e-36 155.2 162 51.9
BcaB04g20935 Brassica carinata HOM05D002732 ORTHO05D006371 3.1e-34 149.1 118 59.3
Mapoly0002s0300 Marchantia polymorpha HOM05D004832 ORTHO05D005821 5.3e-34 148.3 167 48.5
SEGI_40532 Sequoiadendron giganteum HOM05D004832 ORTHO05D005821 9.1e-34 147.5 120 59.2
Pp3c10_24560 Physcomitrium patens HOM05D004832 ORTHO05D005821 2.9e-32 142.5 163 48.5
HanXRQChr13g0390291 Helianthus annuus HOM05D004832 ORTHO05D005821 1.9e-31 139.8 132 52.3
AagrBONN_evm.TU.Sc2ySwM_368.2344 Anthoceros agrestis HOM05D004832 ORTHO05D005821 3.2e-31 139.0 167 44.3
Sp1g41650 Schrenkiella parvula HOM05D004832 ORTHO05D005821 7.2e-31 137.9 118 54.2
AUR62005450 Chenopodium quinoa HOM05D004832 ORTHO05D005821 2.7e-30 136.0 128 57.8
HPP92_023759 Vanilla planifolia HOM05D004832 ORTHO05D005821 1.0e-29 134.0 123 52.8
Psat6g056000 Pisum sativum HOM05D004832 ORTHO05D005821 1.3e-27 127.1 128 55.5
SMO141G0160 Selaginella moellendorffii HOM05D004832 ORTHO05D005821 1.1e-26 124.0 146 43.8
Atru.chr5.209 Acer truncatum HOM05D004832 ORTHO05D005821 1.8e-26 123.2 76 76.3
EL10Ac6g13797 Beta vulgaris HOM05D004832 ORTHO05D005821 1.5e-25 120.2 90 64.4
Glyma.03G117400 Glycine max HOM05D004832 ORTHO05D005821 3.8e-24 115.5 73 76.7
HPP92_023760 Vanilla planifolia HOM05D004832 ORTHO05D005821 1.2e-22 110.5 103 51.5
Potri.014G057550 Populus trichocarpa HOM05D004832 ORTHO05D005821 3.6e-22 109.0 167 41.9
CARHR215320 Cardamine hirsuta HOM05D004832 ORTHO05D005821 6.1e-22 108.2 71 69.0
Thhalv10002901m.g Eutrema salsugineum HOM05D004832 ORTHO05D005821 8.8e-21 104.4 160 40.6
BcaC08g43270 Brassica carinata HOM05D004832 ORTHO05D005821 4.4e-20 102.1 75 61.3
C06p06180 Brassica napus HOM05D004832 ORTHO05D005821 4.4e-20 102.1 75 61.3
BolC6t35729H Brassica oleracea HOM05D004832 ORTHO05D005821 4.4e-20 102.1 75 61.3
Thhalv10009561m.g Eutrema salsugineum HOM05D004832 ORTHO05D005821 1.3e-19 100.5 99 52.5
QL12p027350 Quercus lobata HOM05D004832 ORTHO05D005821 1.3e-19 100.5 57 75.4
CARHR090340 Cardamine hirsuta HOM05D004832 ORTHO05D005821 1.9e-15 86.7 75 58.7
Os06g0535333 Oryza sativa ssp. japonica HOM05D004832 ORTHO05D005821 8.0e-14 81.3 59 64.4
Nn1g00967 Nelumbo nucifera HOM05D004832 ORTHO05D005821 1.8e-13 80.1 58 62.1
Sabra14G0041800 Salix brachista HOM05D004832 ORTHO05D005821 3.0e-13 79.3 75 57.3
Oeu063212.2 Olea europaea HOM05D004832 ORTHO05D005821 1.3e-11 73.9 167 34.1
arahy.Tifrunner.gnm1.ann1.T8JHIW Arachis hypogaea HOM05D004832 ORTHO05D005821 1.1e-10 70.9 54 63.0
Atru.chr5.208 Acer truncatum HOM05D004832 ORTHO05D005821 7.0e-10 68.2 54 63.0
Atru.chr5.565 Acer truncatum HOM05D004832 ORTHO05D005821 1.2e-09 67.4 50 66.0
Atru.chr5.584 Acer truncatum HOM05D004832 ORTHO05D005821 1.6e-09 67.0 49 65.3
vmacro13464 Vaccinium macrocarpon HOM05D004832 ORTHO05D005821 1.7e-08 63.5 48 70.8
QL12p027355 Quercus lobata HOM05D001289 ORTHO05D002298 1.6e-06 57.0 34 76.5
vmacro05238 Vaccinium macrocarpon HOM05D004832 ORTHO05D005821 2.7e-06 56.2 42 71.4


User provided reference genes

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