Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN06G1517 Fragaria x ananassa HOM05D004911 ORTHO05D005930 0.0e+00 2228.8 1116 100.0
FAN06G4750 Fragaria x ananassa HOM05D004911 ORTHO05D005930 0.0e+00 2215.7 1116 99.4
FvH4_7g19060 Fragaria vesca HOM05D004911 ORTHO05D005930 0.0e+00 2214.9 1116 99.4
FAN03G1024 Fragaria x ananassa HOM05D004911 ORTHO05D005930 0.0e+00 2148.2 1118 96.4
FAN10G0928 Fragaria x ananassa HOM05D004911 ORTHO05D005930 0.0e+00 2147.5 1118 96.3
FAN10G1537 Fragaria x ananassa HOM05D004911 ORTHO05D005930 0.0e+00 2143.6 1118 96.2
FAN01G1211 Fragaria x ananassa HOM05D004911 ORTHO05D005930 0.0e+00 2142.5 1120 96.4
RcHm_v2.0_Chr1g0362961 Rosa chinensis HOM05D004911 ORTHO05D005930 0.0e+00 2059.6 1118 92.0
Prupe.2G211300 Prunus persica HOM05D004911 ORTHO05D005930 0.0e+00 1745.3 1143 78.2
MD07G1172300 Malus domestica HOM05D004911 ORTHO05D005930 0.0e+00 1699.9 1153 75.5
MD01G1105900 Malus domestica HOM05D004911 ORTHO05D005930 0.0e+00 1676.4 1153 74.5
CANSAT56G0121 Cannabis sativa HOM05D004911 ORTHO05D005930 0.0e+00 1540.0 1137 69.0
Atru.chr11.1224 Acer truncatum HOM05D004911 ORTHO05D005930 0.0e+00 1477.6 1126 67.2
Potri.008G085300 Populus trichocarpa HOM05D004911 ORTHO05D005930 0.0e+00 1471.1 1134 66.3
Dinv12051 Davidia involucrata HOM05D004911 ORTHO05D005930 0.0e+00 1456.0 1130 65.7
TWI53G1120 Tripterygium wilfordii HOM05D004911 ORTHO05D005930 0.0e+00 1454.5 1132 66.5
Cfa008718 Carpinus fangiana HOM05D004911 ORTHO05D005930 0.0e+00 1450.6 1146 65.8
Ciclev10030563m.g Citrus clementina HOM05D004911 ORTHO05D005930 0.0e+00 1449.1 1119 66.5
Sabra08G0063200 Salix brachista HOM05D004911 ORTHO05D005930 0.0e+00 1441.8 1150 64.7
GSVIVG01010210001 Vitis vinifera HOM05D004911 ORTHO05D005930 0.0e+00 1441.0 1136 65.8
Manes.03G080800 Manihot esculenta HOM05D004911 ORTHO05D005930 0.0e+00 1430.6 1134 65.0
Thecc.02G295700 Theobroma cacao HOM05D004911 ORTHO05D005930 0.0e+00 1429.8 1120 64.6
Duzib251G0593 Durio zibethinus HOM05D004911 ORTHO05D005930 0.0e+00 1402.5 1122 64.0
CSS0020868 Camellia sinensis var. sinensis HOM05D004911 ORTHO05D005930 0.0e+00 1385.9 1134 64.0
Gorai.012G182900 Gossypium raimondii HOM05D004911 ORTHO05D005930 0.0e+00 1372.5 1120 62.5
Gohir.A04G143200 Gossypium hirsutum HOM05D004911 ORTHO05D005930 0.0e+00 1368.6 1120 62.2
Gohir.D04G186500 Gossypium hirsutum HOM05D004911 ORTHO05D005930 0.0e+00 1360.1 1120 62.1
Lj3g0004396 Lotus japonicus HOM05D004911 ORTHO05D005930 0.0e+00 1356.3 1122 61.1
Glyma.12G027900 Glycine max HOM05D004911 ORTHO05D005930 0.0e+00 1355.9 1136 61.9
Nn3g18681 Nelumbo nucifera HOM05D004911 ORTHO05D005930 0.0e+00 1347.4 1136 61.5
ClCG01G007110 Citrullus lanatus HOM05D004911 ORTHO05D005930 0.0e+00 1347.0 1135 62.4
VMungo1215G1051 Vigna mungo HOM05D004911 ORTHO05D005930 0.0e+00 1344.7 1137 61.5
MELO3C005202.2 Cucumis melo HOM05D004911 ORTHO05D005930 0.0e+00 1341.6 1129 62.7
Psat7g173880 Pisum sativum HOM05D004911 ORTHO05D005930 0.0e+00 1341.6 1124 61.6
Glyma.11G102800 Glycine max HOM05D004911 ORTHO05D005930 0.0e+00 1333.9 1139 60.5
Rhsim09G0072200 Rhododendron simsii HOM05D004911 ORTHO05D005930 0.0e+00 1333.2 1168 61.0
Actinidia04316 Actinidia chinensis HOM05D004911 ORTHO05D005930 0.0e+00 1331.6 1144 61.0
Lj3C852G13 Lonicera japonica HOM05D004911 ORTHO05D005930 0.0e+00 1330.9 1150 60.3
CsaV3_5G017560 Cucumis sativus L. HOM05D004911 ORTHO05D005930 0.0e+00 1326.2 1130 61.8
Medtr4g074460 Medicago truncatula HOM05D004911 ORTHO05D005930 0.0e+00 1324.3 1126 60.9
Cpa.g.sc63.15 Carica papaya HOM05D004911 ORTHO05D005930 0.0e+00 1322.8 1132 62.3
Sed0025480 Sechium edule HOM05D004911 ORTHO05D005930 0.0e+00 1318.5 1132 61.8
Lalb_Chr19g0139351 Lupinus albus HOM05D004911 ORTHO05D005930 0.0e+00 1317.0 1125 61.4
PGR044G1924 Punica granatum HOM05D004911 ORTHO05D005930 0.0e+00 1309.7 1127 61.4
Aqoxy3G04281 Aquilegia oxysepala HOM05D004911 ORTHO05D005930 0.0e+00 1307.0 1129 60.0
Ca_25607_v3 Cicer arietinum L. HOM05D004911 ORTHO05D005930 0.0e+00 1303.5 1127 60.2
PSO782G1502 Papaver somniferum HOM05D004911 ORTHO05D005930 0.0e+00 1302.3 1139 59.0
PSO063G3537 Papaver somniferum HOM05D004911 ORTHO05D005930 0.0e+00 1301.2 1139 58.7
MBI03_g33919_MAGBIO Magnolia biondii HOM05D004911 ORTHO05D005930 0.0e+00 1296.6 1127 60.1
COL.COLO4_16624 Corchorus olitorius HOM05D004911 ORTHO05D005930 0.0e+00 1273.1 1118 59.6
Hma1.2p1_0183F.1_g081050 Hydrangea macrophylla HOM05D004911 ORTHO05D005930 0.0e+00 1269.6 1091 61.9
Nitab4.5_0000562g0030 Nicotiana tabacum HOM05D004911 ORTHO05D005930 0.0e+00 1251.9 1143 57.8
Solyc10g079850.2 Solanum lycopersicum HOM05D004911 ORTHO05D005930 0.0e+00 1251.5 1142 57.6
arahy.Tifrunner.gnm1.ann1.Q7DFN3 Arachis hypogaea HOM05D004911 ORTHO05D005930 0.0e+00 1250.0 1016 61.5
PGSC0003DMG400029831 Solanum tuberosum HOM05D004911 ORTHO05D005930 0.0e+00 1248.8 1142 57.4
Sopen10g030460 Solanum pennellii HOM05D004911 ORTHO05D005930 0.0e+00 1244.6 1142 57.5
EL10Ac9g22915 Beta vulgaris HOM05D004911 ORTHO05D005930 0.0e+00 1239.9 1140 57.1
Peaxi162Scf01315g00114 Petunia axillaris HOM05D004911 ORTHO05D005930 0.0e+00 1238.8 1136 58.3
Nitab4.5_0000677g0060 Nicotiana tabacum HOM05D004911 ORTHO05D005930 0.0e+00 1228.4 1139 57.3
Lsat_1_v5_gn_0_9321 Lactuca sativa HOM05D004911 ORTHO05D005930 0.0e+00 1224.2 1149 56.4
Hund08529 Selenicereus undatus HOM05D004911 ORTHO05D005930 0.0e+00 1220.7 1137 56.4
vmacro16011 Vaccinium macrocarpon HOM05D004911 ORTHO05D005930 0.0e+00 1214.9 1129 58.8
AUR62015197 Chenopodium quinoa HOM05D004911 ORTHO05D005930 0.0e+00 1199.5 1078 58.0
Thhalv10019942m.g Eutrema salsugineum HOM05D004911 ORTHO05D005930 0.0e+00 1199.5 1128 55.5
Ah.01g001680 Amaranthus hybridus HOM05D004911 ORTHO05D005930 0.0e+00 1191.8 1143 54.9
DCAR_023433 Daucus carota HOM05D004911 ORTHO05D005930 0.0e+00 1190.3 1129 56.5
Sc06g0007820 Simmondsia chinensis HOM05D004911 ORTHO05D005930 0.0e+00 1180.6 1138 56.5
ECA246G1490 Erigeron canadensis HOM05D004911 ORTHO05D005930 0.0e+00 1177.5 1146 55.7
Carub.0003s1976 Capsella rubella HOM05D004911 ORTHO05D005930 0.0e+00 1175.6 1140 54.3
HanXRQChr06g0175521 Helianthus annuus HOM05D004911 ORTHO05D005930 0.0e+00 1175.2 1145 55.1
CARHR095390 Cardamine hirsuta HOM05D004911 ORTHO05D005930 0.0e+00 1172.5 1130 54.9
MSTRG.8077 Avicennia marina HOM05D004911 ORTHO05D005930 0.0e+00 1170.2 1140 54.5
AT3G19870 Arabidopsis thaliana HOM05D004911 ORTHO05D005930 0.0e+00 1167.1 1137 54.0
AL3G33410 Arabidopsis lyrata HOM05D004911 ORTHO05D005930 0.0e+00 1165.2 1137 54.0
SalBow2G3529 Salvia bowleyana HOM05D004911 ORTHO05D005930 0.0e+00 1160.2 1143 54.2
THA.LOC104809147 Tarenaya hassleriana HOM05D004911 ORTHO05D005930 0.0e+00 1159.4 1122 55.4
Sp3g17890 Schrenkiella parvula HOM05D004911 ORTHO05D005930 0.0e+00 1153.3 1140 53.9
Aa31LG8G6640 Aethionema arabicum HOM05D004911 ORTHO05D005930 0.0e+00 1149.0 1120 53.9
BraA01t03570Z Brassica rapa HOM05D004911 ORTHO05D005930 0.0e+00 1145.2 1132 54.0
A01p34870 Brassica napus HOM05D004911 ORTHO05D005930 0.0e+00 1139.8 1132 54.0
BolC1t04393H Brassica oleracea HOM05D004911 ORTHO05D005930 0.0e+00 1139.8 1131 53.9
Cc07_g19490 Coffea canephora HOM05D004911 ORTHO05D005930 0.0e+00 1139.8 1144 54.1
CAN.G1656.8 Capsicum annuum HOM05D004911 ORTHO05D005930 0.0e+00 1138.6 1010 58.7
C01p44300 Brassica napus HOM05D004911 ORTHO05D005930 0.0e+00 1136.3 1131 53.8
Migut.H02310 Erythranthe guttata HOM05D004911 ORTHO05D005930 0.0e+00 1132.1 1144 53.5
SGA_v2.0_scaffold80G25956 Striga asiatica HOM05D004911 ORTHO05D005930 0.0e+00 1102.4 1106 54.0
ATR0564G294 Amborella trichopoda HOM05D004911 ORTHO05D005930 0.0e+00 1097.4 1170 51.1
unitig_22.g6363 Utricularia gibba HOM05D004911 ORTHO05D005930 0.0e+00 1086.2 1131 52.2
TPR.G32325 Trifolium pratense HOM05D004911 ORTHO05D005930 1.1e-295 1020.4 896 59.9
SHI04173 Sapria himalayana HOM05D004911 ORTHO05D005930 2.7e-291 1005.7 1153 49.0
BcaC09g48939 Brassica carinata HOM05D004911 ORTHO05D005930 1.3e-282 976.9 1121 49.8
Eucgr.J00848 Eucalyptus grandis HOM05D004911 ORTHO05D005930 1.9e-273 946.4 765 62.0
QL03p043438 Quercus lobata HOM05D004911 ORTHO05D005930 9.6e-273 944.1 639 74.0
CiPaw.05G166600 Carya illinoinensis HOM05D004911 ORTHO05D005930 7.6e-270 934.5 650 71.7
Os02g0829400 Oryza sativa ssp. japonica HOM05D004911 ORTHO05D005930 1.4e-247 860.5 1145 44.6
CDE05G0535 Ceratophyllum demersum HOM05D004911 ORTHO05D005930 6.1e-243 845.1 1130 43.6
Hma1.2p1_0183F.1_g081060 Hydrangea macrophylla HOM05D004911 ORTHO05D005930 5.3e-239 832.0 646 66.1
Mapoly0023s0169 Marchantia polymorpha HOM05D004911 ORTHO05D005930 4.1e-223 779.2 1215 39.3
Haze_11729 Corylus avellana HOM05D004911 ORTHO05D005930 1.3e-221 774.2 613 64.4
AUR62017660 Chenopodium quinoa HOM05D004911 ORTHO05D005930 6.3e-216 755.4 642 59.7
TAR371G0035 Trochodendron aralioides HOM05D004911 ORTHO05D005930 2.9e-213 746.5 559 67.4
SMO367G0101 Selaginella moellendorffii HOM05D004911 ORTHO05D005930 6.6e-213 745.3 1157 40.9
Oeu056145.2 Olea europaea HOM05D004911 ORTHO05D005930 3.2e-207 726.5 645 58.6
Pp3c23_5970 Physcomitrium patens HOM05D004911 ORTHO05D005930 4.1e-207 726.1 1223 37.8
Phvul.002G058701 Phaseolus vulgaris HOM05D004911 ORTHO05D005930 8.0e-203 711.8 561 64.5
HPP92_012853 Vanilla planifolia HOM05D004911 ORTHO05D005930 5.1e-173 612.8 706 48.6
Zm00001eb259390 Zea mays HOM05D004911 ORTHO05D005930 6.6e-173 612.5 638 51.1
Haze_11728 Corylus avellana HOM05D004911 ORTHO05D005930 1.5e-169 601.3 460 68.5
CiPaw.05G166500 Carya illinoinensis HOM05D004911 ORTHO05D005930 2.2e-168 597.4 489 63.4
TAR371G0490 Trochodendron aralioides HOM05D004911 ORTHO05D005930 3.4e-161 573.5 512 56.6
QL03p043434 Quercus lobata HOM05D004911 ORTHO05D005930 1.5e-153 548.1 476 59.9
AagrBONN_evm.TU.Sc2ySwM_228.3553 Anthoceros agrestis HOM05D004911 ORTHO05D005930 7.5e-92 343.2 511 40.3
CBR_g20270 Chara braunii HOM05D004911 ORTHO05D005930 1.2e-89 335.9 1598 24.2
HPP92_012844 Vanilla planifolia HOM05D004911 ORTHO05D005930 1.6e-78 298.9 736 33.8
AagrBONN_evm.TU.Sc2ySwM_228.3554 Anthoceros agrestis HOM05D004911 ORTHO05D005930 1.0e-72 279.6 544 34.7
HPP92_012845 Vanilla planifolia HOM05D004911 ORTHO05D005930 3.6e-70 271.2 264 54.2
SHI34912 Sapria himalayana HOM05D004911 ORTHO05D005930 6.4e-67 260.4 584 32.7
SHI47273 Sapria himalayana HOM05D004911 ORTHO05D005930 1.1e-63 249.6 481 34.7
SHI38855 Sapria himalayana HOM05D004911 ORTHO05D005930 1.7e-56 225.7 380 41.3
SHI42568 Sapria himalayana HOM05D004911 ORTHO05D005930 4.0e-53 214.5 556 29.5
SHI50333 Sapria himalayana HOM05D004911 ORTHO05D005930 1.4e-50 206.1 516 31.6
SHI53748 Sapria himalayana HOM05D004911 ORTHO05D005930 2.0e-44 185.7 216 49.1
SHI45395 Sapria himalayana HOM05D004911 ORTHO05D005930 3.2e-42 178.3 672 26.5
SHI45716 Sapria himalayana HOM05D004911 ORTHO05D005930 3.2e-42 178.3 672 26.5
SHI39005 Sapria himalayana HOM05D004911 ORTHO05D005930 1.6e-41 176.0 186 48.4
SHI34911 Sapria himalayana HOM05D004911 ORTHO05D005930 1.3e-40 172.9 249 39.8
SHI39007 Sapria himalayana HOM05D004911 ORTHO05D005930 3.2e-34 151.8 376 31.9
SHI39004 Sapria himalayana HOM05D004911 ORTHO05D005930 9.3e-34 150.2 150 56.0
SHI49274 Sapria himalayana HOM05D004911 ORTHO05D005930 1.2e-33 149.8 210 43.8
SHI42567 Sapria himalayana HOM05D004911 ORTHO05D005930 2.7e-33 148.7 148 54.1
SHI38854 Sapria himalayana HOM05D004911 ORTHO05D005930 2.2e-27 129.0 120 57.5
SHI50603 Sapria himalayana HOM05D004911 ORTHO05D005930 6.5e-27 127.5 215 38.6
SHI51106 Sapria himalayana HOM05D004911 ORTHO05D005930 3.2e-26 125.2 103 55.3
VMungo0251G2567 Vigna mungo HOM05D004911 ORTHO05D018492 6.1e-25 120.9 105 56.2
SHI45052 Sapria himalayana HOM05D004911 ORTHO05D005930 8.5e-19 100.5 240 30.4
SEGI_29886 Sequoiadendron giganteum HOM05D004911 ORTHO05D005930 1.4e-18 99.8 140 43.6
SHI45396 Sapria himalayana HOM05D004911 ORTHO05D005930 1.9e-18 99.4 208 33.7
SHI45717 Sapria himalayana HOM05D004911 ORTHO05D005930 1.9e-18 99.4 208 33.7
Dinv29855 Davidia involucrata HOM05D004911 ORTHO05D005930 1.5e-15 89.7 53 75.5
ATR0624G005 Amborella trichopoda HOM05D004911 ORTHO05D005930 3.3e-15 88.6 116 38.8
Haze_13501 Corylus avellana HOM05D004911 ORTHO05D005930 2.4e-13 82.4 71 53.5
SHI45051 Sapria himalayana HOM05D004911 ORTHO05D005930 1.0e-11 77.0 54 66.7
EL10Ac2g03601 Beta vulgaris HOM05D004911 ORTHO05D005930 6.5e-11 74.3 58 56.9
SMO343G0003 Selaginella moellendorffii HOM05D004911 ORTHO05D005930 5.2e-08 64.7 82 43.9


User provided reference genes

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