Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN06G1484 Fragaria x ananassa HOM05D000509 ORTHO05D006393 1.0e-82 310.1 162 100.0
FvH4_7g14280 Fragaria vesca HOM05D000509 ORTHO05D006393 5.1e-66 254.6 162 85.8
FAN06G3105 Fragaria x ananassa HOM05D000509 ORTHO05D006393 8.7e-66 253.8 131 100.0
FAN03G2840 Fragaria x ananassa HOM05D000509 ORTHO05D006393 4.6e-59 231.5 162 80.2
FAN10G1528 Fragaria x ananassa HOM05D000509 ORTHO05D006393 4.6e-59 231.5 162 80.2
FAN10G1645 Fragaria x ananassa HOM05D000509 ORTHO05D006393 4.6e-59 231.5 162 80.2
FAN01G0359 Fragaria x ananassa HOM05D000509 ORTHO05D006393 1.0e-50 203.8 162 73.5
RcHm_v2.0_Chr1g0355271 Rosa chinensis HOM05D000509 ORTHO05D006393 8.7e-50 200.7 164 72.6
Prupe.2G170600 Prunus persica HOM05D000509 ORTHO05D006393 5.9e-30 134.8 157 55.4
Prupe.1G174800 Prunus persica HOM05D000509 ORTHO05D006393 5.0e-29 131.7 163 52.8
MD07G1137000 Malus domestica HOM05D000509 ORTHO05D006393 5.2e-26 121.7 155 51.6
MD01G1060700 Malus domestica HOM05D000509 ORTHO05D006393 2.8e-24 115.9 155 50.3
Glyma.18G233000 Glycine max HOM05D000509 ORTHO05D006393 3.7e-24 115.5 164 51.8
VMungo1383G0114 Vigna mungo HOM05D000509 ORTHO05D006393 3.5e-22 109.0 158 50.0
VMungo0540G0837 Vigna mungo HOM05D000509 ORTHO05D006393 5.9e-22 108.2 168 49.4
Ca_07920_v3 Cicer arietinum L. HOM05D000509 ORTHO05D006393 2.5e-20 102.8 154 50.0
Phvul.008G062400 Phaseolus vulgaris HOM05D000509 ORTHO05D006393 3.2e-20 102.4 156 48.7
arahy.Tifrunner.gnm1.ann1.NYL5F5 Arachis hypogaea HOM05D000509 ORTHO05D006393 9.4e-20 100.9 153 46.4
CiPaw.01G061300 Carya illinoinensis HOM05D000509 ORTHO05D006393 9.4e-20 100.9 163 47.2
arahy.Tifrunner.gnm1.ann1.E8SAKG Arachis hypogaea HOM05D000509 ORTHO05D006393 3.6e-19 99.0 154 46.8
Cpa.g.sc11.3 Carica papaya HOM05D000509 ORTHO05D006393 3.6e-19 99.0 153 45.8
Ciclev10022504m.g Citrus clementina HOM05D000509 ORTHO05D006393 8.0e-19 97.8 132 49.2
Phvul.008G065500 Phaseolus vulgaris HOM05D000509 ORTHO05D006393 1.8e-18 96.7 165 46.7
Thecc.04G199400 Theobroma cacao HOM05D000509 ORTHO05D006393 1.8e-18 96.7 160 46.2
CiPaw.02G030900 Carya illinoinensis HOM05D000509 ORTHO05D006393 4.0e-18 95.5 164 47.0
Psat3g108360 Pisum sativum HOM05D000509 ORTHO05D006393 4.0e-18 95.5 156 48.7
TPR.G37720 Trifolium pratense HOM05D000509 ORTHO05D006393 1.2e-17 94.0 114 55.3
TWI14G0500 Tripterygium wilfordii HOM05D000509 ORTHO05D006393 2.6e-17 92.8 162 41.4
Dinv41795 Davidia involucrata HOM05D000509 ORTHO05D006393 3.4e-17 92.4 156 44.9
Eucgr.B00993 Eucalyptus grandis HOM05D000509 ORTHO05D006393 4.4e-17 92.0 154 44.2
Eucgr.B00880 Eucalyptus grandis HOM05D000509 ORTHO05D006393 7.5e-17 91.3 158 46.2
Medtr8g095630 Medicago truncatula HOM05D000509 ORTHO05D006393 7.5e-17 91.3 153 47.1
Lalb_Chr03g0038131 Lupinus albus HOM05D000509 ORTHO05D006393 3.7e-16 89.0 159 46.5
CSS0014656 Camellia sinensis var. sinensis HOM05D000509 ORTHO05D006393 4.8e-16 88.6 162 44.4
Haze_15506 Corylus avellana HOM05D000509 ORTHO05D006393 4.8e-16 88.6 147 45.6
Cfa003925 Carpinus fangiana HOM05D000509 ORTHO05D006393 1.1e-15 87.4 145 46.2
QL08p048801 Quercus lobata HOM05D000509 ORTHO05D006393 1.4e-15 87.0 120 50.8
MSTRG.20833 Avicennia marina HOM05D000509 ORTHO05D006393 3.1e-15 85.9 164 38.4
PGR042G3203 Punica granatum HOM05D000509 ORTHO05D006393 5.4e-15 85.1 159 42.8
Dinv32484 Davidia involucrata HOM05D000509 ORTHO05D006393 7.0e-15 84.7 130 47.7
Lj1g0015308 Lotus japonicus HOM05D000509 ORTHO05D006393 7.0e-15 84.7 162 43.8
Duzib151G0093 Durio zibethinus HOM05D000509 ORTHO05D006393 9.1e-15 84.3 156 44.2
Actinidia12704 Actinidia chinensis HOM05D000509 ORTHO05D006393 1.6e-14 83.6 163 41.7
AUR62004883 Chenopodium quinoa HOM05D000509 ORTHO05D006393 1.6e-14 83.6 112 44.6
Manes.07G019100 Manihot esculenta HOM05D000509 ORTHO05D006393 1.6e-14 83.6 167 38.3
SalBow6G4776 Salvia bowleyana HOM05D000509 ORTHO05D006393 1.6e-14 83.6 163 39.9
MBI17_g24690_MAGBIO Magnolia biondii HOM05D000509 ORTHO05D006393 3.5e-14 82.4 161 41.0
Rhsim07G0117300 Rhododendron simsii HOM05D000509 ORTHO05D006393 4.5e-14 82.0 159 39.6
EL10Ac4g09051 Beta vulgaris HOM05D000509 ORTHO05D006393 1.3e-13 80.5 155 36.8
CSS0014005 Camellia sinensis var. sinensis HOM05D000509 ORTHO05D006393 1.3e-13 80.5 163 42.9
Cc02_g38030 Coffea canephora HOM05D000509 ORTHO05D006393 1.3e-13 80.5 161 38.5
Glyma.09G259300 Glycine max HOM05D000509 ORTHO05D006393 1.3e-13 80.5 82 53.7
Lsat_1_v5_gn_8_97941 Lactuca sativa HOM05D002211 ORTHO05D002206 1.3e-13 80.5 102 49.0
QL10p007195 Quercus lobata HOM05D000509 ORTHO05D006393 1.3e-13 80.5 78 57.7
Gohir.D02G024500 Gossypium hirsutum HOM05D000509 ORTHO05D006393 1.7e-13 80.1 155 40.6
QL93p0259_0027 Quercus lobata HOM05D000509 ORTHO05D006393 1.7e-13 80.1 160 40.0
Gohir.A02G020500 Gossypium hirsutum HOM05D000509 ORTHO05D006393 2.2e-13 79.7 155 40.6
Gohir.A08G013720 Gossypium hirsutum HOM05D000509 ORTHO05D006393 2.2e-13 79.7 155 40.6
Hund14886 Selenicereus undatus HOM05D000509 ORTHO05D006393 2.2e-13 79.7 160 41.2
TWI23G0635 Tripterygium wilfordii HOM05D000509 ORTHO05D006393 2.9e-13 79.3 158 38.0
Aqoxy2G02281 Aquilegia oxysepala HOM05D000509 ORTHO05D006393 3.8e-13 79.0 114 44.7
Eucgr.L01454 Eucalyptus grandis HOM05D000509 ORTHO05D006393 3.8e-13 79.0 106 52.8
Manes.10G122200 Manihot esculenta HOM05D000509 ORTHO05D006393 5.0e-13 78.6 161 41.0
Zm00001eb039300 Zea mays HOM05D000509 ORTHO05D006393 6.5e-13 78.2 150 38.0
CANSAT56G2260 Cannabis sativa HOM05D000509 ORTHO05D006393 1.1e-12 77.4 153 38.6
Gorai.005G030400 Gossypium raimondii HOM05D000509 ORTHO05D006393 1.1e-12 77.4 155 40.6
SGA_v2.0_scaffold95G28834 Striga asiatica HOM05D000509 ORTHO05D006393 1.1e-12 77.4 149 38.3
Potri.016G069200 Populus trichocarpa HOM05D000509 ORTHO05D006393 1.9e-12 76.6 157 42.0
DCAR_019105 Daucus carota HOM05D000509 ORTHO05D006393 3.2e-12 75.9 156 40.4
QL01p005382 Quercus lobata HOM05D000509 ORTHO05D006393 4.2e-12 75.5 160 40.0
THA.LOC104798540 Tarenaya hassleriana HOM05D000509 ORTHO05D006393 4.2e-12 75.5 145 40.7
vmacro20943 Vaccinium macrocarpon HOM05D000509 ORTHO05D006393 4.2e-12 75.5 122 43.4
GSVIVG01008341001 Vitis vinifera HOM05D000509 ORTHO05D006393 4.2e-12 75.5 127 42.5
Rhsim07G0118400 Rhododendron simsii HOM05D000509 ORTHO05D006393 5.5e-12 75.1 119 42.9
THA.LOC104820589 Tarenaya hassleriana HOM05D000509 ORTHO05D006393 5.5e-12 75.1 160 38.8
C08p36230 Brassica napus HOM05D000509 ORTHO05D006393 7.2e-12 74.7 78 55.1
BolC8t51205H Brassica oleracea HOM05D000509 ORTHO05D006393 7.2e-12 74.7 78 55.1
AT3G61370 Arabidopsis thaliana HOM05D000509 ORTHO05D006393 9.5e-12 74.3 154 41.6
Os08g0559700 Oryza sativa ssp. japonica HOM05D000509 ORTHO05D006393 9.5e-12 74.3 111 42.3
Aa31LG1G27330 Aethionema arabicum HOM05D000509 ORTHO05D006393 1.2e-11 73.9 113 46.9
Ah.04g163760 Amaranthus hybridus HOM05D000509 ORTHO05D006393 1.2e-11 73.9 112 39.3
Medtr7g077710 Medicago truncatula HOM05D000509 ORTHO05D006393 1.2e-11 73.9 168 39.3
Nitab4.5_0000583g0080 Nicotiana tabacum HOM05D000509 ORTHO05D006393 1.6e-11 73.6 124 43.5
MBI17_g24691_MAGBIO Magnolia biondii HOM05D000509 ORTHO05D006393 2.1e-11 73.2 124 40.3
Actinidia33421 Actinidia chinensis HOM05D001542 ORTHO05D001416 3.6e-11 72.4 158 36.7
Sabra02G0116600 Salix brachista HOM05D000509 ORTHO05D006393 3.6e-11 72.4 117 47.0
unitig_0.g1262 Utricularia gibba HOM05D000509 ORTHO05D006393 3.6e-11 72.4 154 38.3
EL10Ac8g20190 Beta vulgaris HOM05D000509 ORTHO05D006393 6.1e-11 71.6 158 37.3
Nn6g33420 Nelumbo nucifera HOM05D000509 ORTHO05D006393 6.1e-11 71.6 159 39.0
PGSC0003DMG400000042 Solanum tuberosum HOM05D000509 ORTHO05D006393 6.1e-11 71.6 161 38.5
Sp5g02030 Schrenkiella parvula HOM05D000509 ORTHO05D006393 1.0e-10 70.9 119 42.9
A09p53420 Brassica napus HOM05D000509 ORTHO05D006393 1.4e-10 70.5 113 45.1
BraA09t40768Z Brassica rapa HOM05D000509 ORTHO05D006393 1.4e-10 70.5 113 45.1
Rhsim07G0117600 Rhododendron simsii HOM05D000509 ORTHO05D006393 1.8e-10 70.1 159 37.1
CDE09G0401 Ceratophyllum demersum HOM05D000509 ORTHO05D006393 3.0e-10 69.3 128 39.8
CsaV3_6G000560 Cucumis sativus L. HOM05D000509 ORTHO05D006393 3.0e-10 69.3 168 35.7
TAR636G2420 Trochodendron aralioides HOM05D000509 ORTHO05D006393 3.0e-10 69.3 156 36.5
Aa31LG5G5170 Aethionema arabicum HOM05D000509 ORTHO05D006393 5.2e-10 68.6 71 53.5
Ah.12g064210 Amaranthus hybridus HOM05D000509 ORTHO05D006393 5.2e-10 68.6 94 46.8
Medtr8g095650 Medicago truncatula HOM05D000509 ORTHO05D006393 5.2e-10 68.6 110 47.3
CARHR171710 Cardamine hirsuta HOM05D000509 ORTHO05D006393 8.8e-10 67.8 112 42.0
MELO3C021209.2 Cucumis melo HOM05D000509 ORTHO05D006393 8.8e-10 67.8 152 38.8
Sed0001004 Sechium edule HOM05D000509 ORTHO05D006393 8.8e-10 67.8 158 35.4
Nitab4.5_0006762g0030 Nicotiana tabacum HOM05D000509 ORTHO05D006393 1.2e-09 67.4 132 41.7
QL11p053603 Quercus lobata HOM05D000509 ORTHO05D006393 1.2e-09 67.4 61 57.4
AUR62001076 Chenopodium quinoa HOM05D000509 ORTHO05D006393 1.5e-09 67.0 185 31.4
Thhalv10006311m.g Eutrema salsugineum HOM05D000509 ORTHO05D006393 1.5e-09 67.0 110 42.7
COL.COLO4_20186 Corchorus olitorius HOM05D000509 ORTHO05D006393 2.0e-09 66.6 151 40.4
ECA233G2837 Erigeron canadensis HOM05D000509 ORTHO05D006393 2.0e-09 66.6 157 36.3
CAN.G78.80 Capsicum annuum HOM05D000509 ORTHO05D006393 2.6e-09 66.2 162 35.2
ClCG06G003680 Citrullus lanatus HOM05D000509 ORTHO05D006393 7.5e-09 64.7 122 38.5
C04p31370 Brassica napus HOM05D000509 ORTHO05D006393 4.9e-08 62.0 90 46.7
Migut.B01755 Erythranthe guttata HOM05D000509 ORTHO05D006393 4.9e-08 62.0 157 33.1
Solyc01g094630.3 Solanum lycopersicum HOM05D000509 ORTHO05D006393 8.3e-08 61.2 163 33.1
HPP92_020794 Vanilla planifolia HOM05D000509 ORTHO05D006393 8.3e-08 61.2 159 33.3
Peaxi162Scf00020g00322 Petunia axillaris HOM05D000509 ORTHO05D006393 1.1e-07 60.8 70 51.4
GSVIVG01003391001 Vitis vinifera HOM05D000509 ORTHO05D006393 1.1e-07 60.8 105 41.0
BcaC02g10220 Brassica carinata HOM05D000509 ORTHO05D006393 1.4e-07 60.5 111 42.3
BcaC07g40634 Brassica carinata HOM05D000509 ORTHO05D006393 1.8e-07 60.1 109 42.2
A04p01140 Brassica napus HOM05D000509 ORTHO05D006393 1.8e-07 60.1 96 43.8
Carub.0005s2804 Capsella rubella HOM05D000509 ORTHO05D006393 1.8e-07 60.1 94 46.8
AL5G43630 Arabidopsis lyrata HOM05D000509 ORTHO05D006393 2.4e-07 59.7 154 37.7
HanXRQChr09g0257651 Helianthus annuus HOM05D000509 ORTHO05D006393 2.4e-07 59.7 82 46.3
Sopen01g038440 Solanum pennellii HOM05D000509 ORTHO05D006393 2.4e-07 59.7 163 34.4
BraA04t15830Z Brassica rapa HOM05D000509 ORTHO05D006393 5.4e-07 58.5 117 40.2
Atru.chr5.498 Acer truncatum HOM05D000509 ORTHO05D006393 7.0e-07 58.2 48 66.7
ATR0680G086 Amborella trichopoda HOM05D000509 ORTHO05D006393 1.6e-06 57.0 97 45.4
BolC4t24686H Brassica oleracea HOM05D000509 ORTHO05D006393 1.6e-06 57.0 72 51.4
DCAR_015993 Daucus carota HOM05D000509 ORTHO05D006393 2.0e-06 56.6 86 45.3
PSO478G1119 Papaver somniferum HOM05D000509 ORTHO05D006393 2.0e-06 56.6 114 36.0
PSO782G0796 Papaver somniferum HOM05D000509 ORTHO05D006393 2.7e-06 56.2 169 34.3


User provided reference genes

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