Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FvH4_7g26050 Fragaria vesca HOM05D007120 ORTHO05D008881 8.6e-13 75.5 33 100.0
FAN03G2745 Fragaria x ananassa HOM05D007120 ORTHO05D008881 8.6e-13 75.5 33 100.0
FAN06G1351 Fragaria x ananassa HOM05D007120 ORTHO05D008881 8.6e-13 75.5 33 100.0
FAN10G2835 Fragaria x ananassa HOM05D007120 ORTHO05D008881 8.6e-13 75.5 33 100.0
RcHm_v2.0_Chr1g0372461 Rosa chinensis HOM05D007120 ORTHO05D008881 1.9e-12 74.3 33 97.0
RcHm_v2.0_Chr7g0235281 Rosa chinensis HOM05D007120 ORTHO05D008881 1.9e-12 74.3 33 97.0
RcHm_v2.0_Chr7g0235311 Rosa chinensis HOM05D007120 ORTHO05D008881 1.9e-12 74.3 33 97.0
Atru.chr12.199 Acer truncatum HOM05D007120 ORTHO05D008881 4.7e-11 69.7 33 87.9
CANSAT56G4069 Cannabis sativa HOM05D007120 ORTHO05D008881 2.6e-09 63.9 33 81.8
FAN01G0895 Fragaria x ananassa HOM05D007120 ORTHO05D008881 3.4e-09 63.5 50 64.0
Aqoxy4G03269 Aquilegia oxysepala HOM05D007120 ORTHO05D008881 4.4e-09 63.2 31 80.6
CiPaw.14G049800 Carya illinoinensis HOM05D007120 ORTHO05D008881 3.8e-08 60.1 31 74.2
Cfa001199 Carpinus fangiana HOM05D007120 ORTHO05D008881 4.9e-08 59.7 31 74.2
Cfa011840 Carpinus fangiana HOM05D007120 ORTHO05D008881 4.9e-08 59.7 31 74.2
Cc02_g05250 Coffea canephora HOM05D007120 ORTHO05D008881 4.9e-08 59.7 30 73.3
Gorai.013G008400 Gossypium raimondii HOM05D007120 ORTHO05D008881 4.9e-08 59.7 31 74.2
HanXRQChr02g0048061 Helianthus annuus HOM05D007120 ORTHO05D008881 4.9e-08 59.7 32 75.0
HanXRQChr10g0312991 Helianthus annuus HOM05D007120 ORTHO05D008881 8.4e-08 58.9 32 75.0
Peaxi162Scf00073g02342 Petunia axillaris HOM05D007120 ORTHO05D008881 1.4e-07 58.2 33 75.8
Potri.019G059500 Populus trichocarpa HOM05D007120 ORTHO05D008881 1.4e-07 58.2 31 77.4
MD03G1050700 Malus domestica HOM05D007120 ORTHO05D008881 1.9e-07 57.8 28 85.7
Lj1A968T57 Lonicera japonica HOM05D007120 ORTHO05D008881 2.4e-07 57.4 30 76.7
Os07g0680300 Oryza sativa ssp. japonica HOM05D007120 ORTHO05D008881 2.4e-07 57.4 30 76.7
Haze_17366 Corylus avellana HOM05D006907 ORTHO05D008598 3.2e-07 57.0 31 67.7
Duzib128G0262 Durio zibethinus HOM05D007120 ORTHO05D008881 3.2e-07 57.0 32 68.8
Lsat_1_v5_gn_6_11060 Lactuca sativa HOM05D007120 ORTHO05D008881 3.2e-07 57.0 32 71.9
TAR369G0939 Trochodendron aralioides HOM05D007120 ORTHO05D008881 3.2e-07 57.0 32 71.9
CSS0015321 Camellia sinensis var. sinensis HOM05D007120 ORTHO05D008881 4.2e-07 56.6 28 75.0
Migut.F00570 Erythranthe guttata HOM05D007120 ORTHO05D008881 4.2e-07 56.6 32 68.8
Gohir.D13G008000 Gossypium hirsutum HOM05D007120 ORTHO05D008881 4.2e-07 56.6 31 71.0
MD01G1169000 Malus domestica HOM05D007120 ORTHO05D008881 5.4e-07 56.2 30 76.7
MD07G1234900 Malus domestica HOM05D007120 ORTHO05D008881 5.4e-07 56.2 30 76.7
Gohir.A13G007800 Gossypium hirsutum HOM05D007120 ORTHO05D008881 7.1e-07 55.8 30 70.0
Lj1g0003388 Lotus japonicus HOM05D007120 ORTHO05D008881 7.1e-07 55.8 32 68.8
Gohir.D06G187000 Gossypium hirsutum HOM05D007120 ORTHO05D008881 9.3e-07 55.5 31 71.0
Gorai.010G219300 Gossypium raimondii HOM05D007120 ORTHO05D008881 9.3e-07 55.5 31 71.0
Phvul.009G043000 Phaseolus vulgaris HOM05D007120 ORTHO05D008881 1.2e-06 55.1 32 68.8
Prupe.2G265200 Prunus persica HOM05D007120 ORTHO05D008881 1.2e-06 55.1 30 70.0
Prupe.6G040200 Prunus persica HOM05D007120 ORTHO05D008881 1.2e-06 55.1 28 78.6
FAN11G0923 Fragaria x ananassa HOM05D007120 ORTHO05D008881 2.1e-06 54.3 32 68.8
Gohir.A06G180100 Gossypium hirsutum HOM05D007120 ORTHO05D008881 2.1e-06 54.3 31 67.7
Lalb_Chr11g0067731 Lupinus albus HOM05D007120 ORTHO05D008881 2.7e-06 53.9 32 68.8
Lalb_Chr23g0272151 Lupinus albus HOM05D007120 ORTHO05D008881 2.7e-06 53.9 32 68.8
Nn2g10275 Nelumbo nucifera HOM05D007120 ORTHO05D008881 2.7e-06 53.9 31 67.7
GSVIVG01032659001 Vitis vinifera HOM05D007120 ORTHO05D008881 3.5e-06 53.5 31 67.7
A04p31140 Brassica napus HOM05D007120 ORTHO05D008881 4.6e-06 53.1 30 66.7
BraA04t18569Z Brassica rapa HOM05D007120 ORTHO05D008881 4.6e-06 53.1 30 66.7
Dinv34497 Davidia involucrata HOM05D006907 ORTHO05D008598 4.6e-06 53.1 31 67.7
FAN21G2234 Fragaria x ananassa HOM05D007120 ORTHO05D008881 6.0e-06 52.8 32 65.6
Thecc.10G184500 Theobroma cacao HOM05D007120 ORTHO05D008881 6.0e-06 52.8 29 65.5
MSTRG.27254 Avicennia marina HOM05D007120 ORTHO05D008881 7.8e-06 52.4 29 65.5
CARHR135860 Cardamine hirsuta HOM05D007120 ORTHO05D008881 7.8e-06 52.4 31 64.5
Thhalv10017507m.g Eutrema salsugineum HOM05D007120 ORTHO05D008881 7.8e-06 52.4 31 64.5
Lalb_Chr08g0239241 Lupinus albus HOM05D007120 ORTHO05D008881 7.8e-06 52.4 32 65.6
Nn5g26831 Nelumbo nucifera HOM05D007120 ORTHO05D008881 7.8e-06 52.4 31 67.7


User provided reference genes

Program Settings