Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FvH4_7g25910 Fragaria vesca HOM05D004173 ORTHO05D004885 8.6e-140 500.4 260 100.0
FAN06G1323 Fragaria x ananassa HOM05D004173 ORTHO05D004885 8.6e-140 500.4 260 100.0
FAN10G3668 Fragaria x ananassa HOM05D004173 ORTHO05D004885 3.0e-124 448.7 260 91.2
FAN03G3439 Fragaria x ananassa HOM05D004173 ORTHO05D004885 1.2e-106 390.2 226 91.2
RcHm_v2.0_Chr1g0372231 Rosa chinensis HOM05D004173 ORTHO05D004885 7.4e-75 284.6 260 65.8
Prupe.2G264000 Prunus persica HOM05D004173 ORTHO05D004885 3.7e-66 255.8 232 65.5
MD01G1167600 Malus domestica HOM05D004173 ORTHO05D004885 5.3e-57 225.3 170 68.8
MD07G1233600 Malus domestica HOM05D004173 ORTHO05D004885 1.4e-54 217.2 208 61.5
Ca_16866_v3 Cicer arietinum L. HOM05D004173 ORTHO05D004885 7.2e-46 188.3 260 47.3
Ca_29953_v3 Cicer arietinum L. HOM05D004173 ORTHO05D004885 7.2e-46 188.3 260 47.3
Cfa001210 Carpinus fangiana HOM05D004173 ORTHO05D004885 2.7e-45 186.4 248 47.6
arahy.Tifrunner.gnm1.ann1.7F477P Arachis hypogaea HOM05D004173 ORTHO05D004885 1.0e-44 184.5 273 45.8
Thecc.10G181100 Theobroma cacao HOM05D004173 ORTHO05D004885 3.0e-44 183.0 247 46.2
Ciclev10032642m.g Citrus clementina HOM05D004173 ORTHO05D004885 4.0e-44 182.6 160 59.4
CANSAT25G2618 Cannabis sativa HOM05D004173 ORTHO05D004885 6.7e-44 181.8 257 46.7
Carub.0006s0418 Capsella rubella HOM05D004173 ORTHO05D004885 8.8e-44 181.4 211 50.7
Medtr3g093970 Medicago truncatula HOM05D004173 ORTHO05D004885 1.2e-43 181.0 258 46.1
A10p30940 Brassica napus HOM05D004173 ORTHO05D004885 1.5e-43 180.6 232 49.6
BraA10t45139Z Brassica rapa HOM05D004173 ORTHO05D004885 1.5e-43 180.6 232 49.6
Sp6g37580 Schrenkiella parvula HOM05D004173 ORTHO05D004885 2.0e-43 180.3 241 48.1
C09p71450 Brassica napus HOM05D004173 ORTHO05D004885 2.6e-43 179.9 234 48.3
BolC9t59908H Brassica oleracea HOM05D004173 ORTHO05D004885 2.6e-43 179.9 234 48.3
Lalb_Chr23g0272221 Lupinus albus HOM05D004173 ORTHO05D004885 3.3e-43 179.5 262 46.2
Psat5g068840 Pisum sativum HOM05D004173 ORTHO05D004885 3.3e-43 179.5 177 54.2
AL6G15090 Arabidopsis lyrata HOM05D004173 ORTHO05D004885 4.4e-43 179.1 254 48.0
Eucgr.J00114 Eucalyptus grandis HOM05D004173 ORTHO05D004885 4.4e-43 179.1 203 51.2
TPR.G1732 Trifolium pratense HOM05D004173 ORTHO05D004885 5.7e-43 178.7 209 49.3
Glyma.06G142900 Glycine max HOM05D004173 ORTHO05D004885 7.5e-43 178.3 175 56.6
AT5G05250 Arabidopsis thaliana HOM05D004173 ORTHO05D004885 2.2e-42 176.8 205 51.7
Thhalv10014558m.g Eutrema salsugineum HOM05D004173 ORTHO05D004885 6.3e-42 175.3 202 51.5
Glyma.04G222500 Glycine max HOM05D004173 ORTHO05D004885 1.4e-41 174.1 258 45.7
Potri.019G058000 Populus trichocarpa HOM05D004173 ORTHO05D004885 1.8e-41 173.7 175 52.6
A09p49310 Brassica napus HOM05D004173 ORTHO05D004885 2.4e-41 173.3 251 44.2
BraA09t40385Z Brassica rapa HOM05D004173 ORTHO05D004885 2.4e-41 173.3 251 44.2
Lj1g0005357 Lotus japonicus HOM05D004173 ORTHO05D004885 5.3e-41 172.2 261 45.2
BolC8t50789H Brassica oleracea HOM05D004173 ORTHO05D004885 7.0e-41 171.8 253 45.8
VMungo1309G0457 Vigna mungo HOM05D004173 ORTHO05D004885 7.0e-41 171.8 255 45.5
CARHR207980 Cardamine hirsuta HOM05D004173 ORTHO05D004885 1.2e-40 171.0 214 46.7
Duzib128G1795 Durio zibethinus HOM05D004173 ORTHO05D004885 1.2e-40 171.0 258 43.8
Lalb_Chr23g0272201 Lupinus albus HOM05D004173 ORTHO05D004885 2.0e-40 170.2 233 46.8
Manes.07G143600 Manihot esculenta HOM05D004173 ORTHO05D004885 2.0e-40 170.2 221 47.5
Duzib114G0418 Durio zibethinus HOM05D004173 ORTHO05D004885 2.7e-40 169.9 252 44.0
Manes.07G141000 Manihot esculenta HOM05D004173 ORTHO05D004885 2.7e-40 169.9 221 47.1
Rhsim09G0185800 Rhododendron simsii HOM05D004173 ORTHO05D004885 2.7e-40 169.9 229 46.3
Peaxi162Scf00739g00035 Petunia axillaris HOM05D004173 ORTHO05D004885 3.5e-40 169.5 160 55.0
BcaC07g39948 Brassica carinata HOM05D004173 ORTHO05D004885 4.5e-40 169.1 202 48.5
C08p31680 Brassica napus HOM05D004173 ORTHO05D004885 4.5e-40 169.1 202 48.5
Manes.10G001300 Manihot esculenta HOM05D004173 ORTHO05D004885 4.5e-40 169.1 199 51.3
Cpa.g.sc19.59 Carica papaya HOM05D004173 ORTHO05D004885 1.0e-39 167.9 268 42.9
Phvul.009G044100 Phaseolus vulgaris HOM05D004173 ORTHO05D004885 1.0e-39 167.9 202 50.0
THA.LOC104824365 Tarenaya hassleriana HOM05D004173 ORTHO05D004885 1.3e-39 167.5 208 48.1
Atru.chr12.182 Acer truncatum HOM05D004173 ORTHO05D004885 1.7e-39 167.2 251 43.0
CARHR166510 Cardamine hirsuta HOM05D004173 ORTHO05D004885 2.2e-39 166.8 252 40.9
Sp5g06150 Schrenkiella parvula HOM05D004173 ORTHO05D004885 2.2e-39 166.8 262 42.0
vmacro09960 Vaccinium macrocarpon HOM05D004173 ORTHO05D004885 2.9e-39 166.4 237 41.8
Actinidia00999 Actinidia chinensis HOM05D004173 ORTHO05D004885 3.8e-39 166.0 171 52.0
Nitab4.5_0000171g0010 Nicotiana tabacum HOM05D004173 ORTHO05D004885 5.0e-39 165.6 222 42.8
Thhalv10006215m.g Eutrema salsugineum HOM05D004173 ORTHO05D004885 6.5e-39 165.2 260 42.7
Oeu063983.1 Olea europaea HOM05D004173 ORTHO05D004885 8.5e-39 164.9 160 51.9
Dinv34482 Davidia involucrata HOM05D004173 ORTHO05D004885 1.5e-38 164.1 250 44.4
AL5G37690 Arabidopsis lyrata HOM05D004173 ORTHO05D004885 1.9e-38 163.7 247 43.7
CAN.G24.14 Capsicum annuum HOM05D004173 ORTHO05D004885 2.5e-38 163.3 203 45.3
AUR62024933 Chenopodium quinoa HOM05D004173 ORTHO05D004885 2.5e-38 163.3 199 47.2
TWI73G0681 Tripterygium wilfordii HOM05D004173 ORTHO05D004885 3.2e-38 162.9 235 43.8
THA.LOC104813511 Tarenaya hassleriana HOM05D004173 ORTHO05D004885 7.2e-38 161.8 186 50.5
CAN.G100.76 Capsicum annuum HOM05D004173 ORTHO05D004885 9.4e-38 161.4 228 43.0
Nitab4.5_0002279g0040 Nicotiana tabacum HOM05D004173 ORTHO05D004885 1.2e-37 161.0 210 42.9
Sc10g0002990 Simmondsia chinensis HOM05D004173 ORTHO05D004885 1.2e-37 161.0 190 51.1
Aa31LG11G6110 Aethionema arabicum HOM05D004173 ORTHO05D004885 1.6e-37 160.6 197 49.2
Hma1.2p1_0264F.1_g106180 Hydrangea macrophylla HOM05D004173 ORTHO05D004885 1.6e-37 160.6 173 50.9
SalBow3G3840 Salvia bowleyana HOM05D004173 ORTHO05D004885 1.6e-37 160.6 160 50.0
THA.LOC104803208 Tarenaya hassleriana HOM05D004173 ORTHO05D004885 1.6e-37 160.6 224 46.9
Peaxi162Scf00739g00036 Petunia axillaris HOM05D004173 ORTHO05D004885 2.1e-37 160.2 167 50.9
Gohir.D05G280200 Gossypium hirsutum HOM05D004173 ORTHO05D004885 3.6e-37 159.5 177 51.4
Haze_17356 Corylus avellana HOM05D004173 ORTHO05D004885 4.7e-37 159.1 250 41.6
Gohir.A05G278500 Gossypium hirsutum HOM05D004173 ORTHO05D004885 4.7e-37 159.1 177 50.8
Gorai.009G293700 Gossypium raimondii HOM05D004173 ORTHO05D004885 4.7e-37 159.1 177 50.8
AT3G56360 Arabidopsis thaliana HOM05D004173 ORTHO05D004885 6.1e-37 158.7 246 41.9
Migut.F00606 Erythranthe guttata HOM05D004173 ORTHO05D004885 6.1e-37 158.7 195 46.7
THA.LOC104826832 Tarenaya hassleriana HOM05D004173 ORTHO05D004885 1.0e-36 157.9 208 48.6
Sed0028126 Sechium edule HOM05D004173 ORTHO05D004885 1.4e-36 157.5 194 49.0
CsaV3_6G002310 Cucumis sativus L. HOM05D004173 ORTHO05D004885 2.3e-36 156.8 164 51.2
BcaC07g39950 Brassica carinata HOM05D004173 ORTHO05D004885 3.0e-36 156.4 194 46.4
Carub.0005s2314 Capsella rubella HOM05D004173 ORTHO05D004885 4.0e-36 156.0 252 40.9
MELO3C020007.2 Cucumis melo HOM05D004173 ORTHO05D004885 4.0e-36 156.0 208 44.2
QL08p064831 Quercus lobata HOM05D004173 ORTHO05D004885 6.8e-36 155.2 204 48.0
CiPaw.01G306500 Carya illinoinensis HOM05D004173 ORTHO05D004885 1.5e-35 154.1 158 53.2
BcaC06g32235 Brassica carinata HOM05D004173 ORTHO05D004885 2.0e-35 153.7 233 44.6
Ah.12g064380 Amaranthus hybridus HOM05D004173 ORTHO05D004885 2.6e-35 153.3 161 52.8
Aa31LG10G11250 Aethionema arabicum HOM05D004173 ORTHO05D004885 3.4e-35 152.9 229 41.5
CSS0045557 Camellia sinensis var. sinensis HOM05D004173 ORTHO05D004885 4.4e-35 152.5 243 41.6
PGSC0003DMG400011642 Solanum tuberosum HOM05D004173 ORTHO05D004885 2.8e-34 149.8 209 41.1
PGSC0003DMG400016638 Solanum tuberosum HOM05D004173 ORTHO05D004885 2.8e-34 149.8 177 46.3
PGR044G2104 Punica granatum HOM05D004173 ORTHO05D004885 8.3e-34 148.3 242 41.7
Solyc06g049020.1 Solanum lycopersicum HOM05D004173 ORTHO05D004885 1.4e-33 147.5 232 41.8
Sopen06g015380 Solanum pennellii HOM05D004173 ORTHO05D004885 1.4e-33 147.5 232 42.2
BcaC02g09832 Brassica carinata HOM05D004173 ORTHO05D004885 3.1e-33 146.4 249 38.2
C04p36060 Brassica napus HOM05D004173 ORTHO05D004885 3.1e-33 146.4 249 38.2
BolC4t25192H Brassica oleracea HOM05D004173 ORTHO05D004885 7.0e-33 145.2 249 38.6
BraA04t16106Z Brassica rapa HOM05D004173 ORTHO05D004885 7.0e-33 145.2 204 42.6
A04p03290 Brassica napus HOM05D004173 ORTHO05D004885 9.1e-33 144.8 204 42.6
SGA_v2.0_scaffold60G20889 Striga asiatica HOM05D004173 ORTHO05D004885 9.1e-33 144.8 170 46.5
BcaB02g08372 Brassica carinata HOM05D004173 ORTHO05D004885 3.5e-32 142.9 222 41.0
AUR62030611 Chenopodium quinoa HOM05D004173 ORTHO05D004885 3.5e-32 142.9 209 42.6
CAN.G203.54 Capsicum annuum HOM05D004173 ORTHO05D004885 5.9e-32 142.1 194 41.2
Peaxi162Scf00167g01213 Petunia axillaris HOM05D004173 ORTHO05D004885 5.9e-32 142.1 159 49.7
Gohir.A13G006500 Gossypium hirsutum HOM05D004173 ORTHO05D004885 1.5e-30 137.5 256 39.1
Gorai.013G006900 Gossypium raimondii HOM05D004173 ORTHO05D004885 3.3e-30 136.3 256 38.7
Gohir.D13G006700 Gossypium hirsutum HOM05D004173 ORTHO05D004885 4.2e-30 136.0 256 40.2
Sopen05g030770 Solanum pennellii HOM05D004173 ORTHO05D004885 5.5e-30 135.6 180 40.6
MBI18_g38876_MAGBIO Magnolia biondii HOM05D004173 ORTHO05D004885 2.1e-29 133.7 166 45.2
Cc10_g16360 Coffea canephora HOM05D004173 ORTHO05D004885 8.0e-29 131.7 167 43.7
Gohir.A05G403100 Gossypium hirsutum HOM05D004173 ORTHO05D004885 6.8e-28 128.6 121 56.2
Lsat_1_v5_gn_8_11461 Lactuca sativa HOM05D004173 ORTHO05D004885 1.2e-27 127.9 165 45.5
Gohir.D04G012400 Gossypium hirsutum HOM05D004173 ORTHO05D004885 2.6e-27 126.7 138 51.4
Nn2g10306 Nelumbo nucifera HOM05D004173 ORTHO05D004885 5.7e-27 125.6 171 40.4
DCAR_014665 Daucus carota HOM05D004173 ORTHO05D004885 7.5e-27 125.2 186 43.5
Gorai.012G014700 Gossypium raimondii HOM05D004173 ORTHO05D004885 7.5e-27 125.2 138 51.4
HanXRQChr09g0252211 Helianthus annuus HOM05D004173 ORTHO05D004885 1.7e-26 124.0 163 44.8
Aqoxy5G02899 Aquilegia oxysepala HOM05D004173 ORTHO05D004885 2.2e-26 123.6 171 40.4
unitig_37.g11910 Utricularia gibba HOM05D004173 ORTHO05D004885 2.8e-26 123.2 161 41.0
Oeu025786.2 Olea europaea HOM05D004173 ORTHO05D004885 6.3e-26 122.1 167 43.1
CSS0041127 Camellia sinensis var. sinensis HOM05D004173 ORTHO05D004885 1.1e-25 121.3 242 32.6
CSS0049649 Camellia sinensis var. sinensis HOM05D004173 ORTHO05D004885 1.1e-25 121.3 242 32.6
Dinv21845 Davidia involucrata HOM05D004173 ORTHO05D004885 1.1e-25 121.3 212 42.0
Nn5g26849 Nelumbo nucifera HOM05D004173 ORTHO05D004885 1.4e-25 120.9 166 39.8
EL10Ac2g02643 Beta vulgaris HOM05D004173 ORTHO05D004885 1.8e-25 120.6 184 43.5
TAR365G0355 Trochodendron aralioides HOM05D004173 ORTHO05D004885 1.8e-25 120.6 215 37.7
TAR365G1150 Trochodendron aralioides HOM05D004173 ORTHO05D004885 4.1e-25 119.4 213 37.6
PSO104G0082 Papaver somniferum HOM05D004173 ORTHO05D004885 5.4e-25 119.0 218 36.2
PSO675G3687 Papaver somniferum HOM05D004173 ORTHO05D004885 7.0e-25 118.6 215 35.3
Zm00001eb215400 Zea mays HOM05D004173 ORTHO05D004885 9.2e-25 118.2 173 35.3
HanXRQChr08g0221561 Helianthus annuus HOM05D004173 ORTHO05D004885 1.2e-24 117.9 163 43.6
ECA238G3313 Erigeron canadensis HOM05D004173 ORTHO05D004885 2.7e-24 116.7 167 40.7
ClCG11G005670 Citrullus lanatus HOM05D004173 ORTHO05D004885 5.9e-24 115.5 191 40.8
PSO421G0661 Papaver somniferum HOM05D004173 ORTHO05D004885 1.3e-23 114.4 196 36.2
Lsat_1_v5_gn_9_60020 Lactuca sativa HOM05D004173 ORTHO05D004885 5.0e-23 112.5 166 41.6
Lsat_1_v5_gn_2_126200 Lactuca sativa HOM05D004173 ORTHO05D004885 8.6e-23 111.7 171 38.6
PSO063G2850 Papaver somniferum HOM05D004173 ORTHO05D004885 1.1e-22 111.3 189 37.0
PSO266G0063 Papaver somniferum HOM05D004173 ORTHO05D004885 1.1e-22 111.3 184 35.3
PSO478G3294 Papaver somniferum HOM05D004173 ORTHO05D004885 3.3e-22 109.8 225 35.1
MSTRG.18054 Avicennia marina HOM05D004173 ORTHO05D004885 7.3e-22 108.6 177 39.0
Zm00001eb056440 Zea mays HOM05D004173 ORTHO05D004885 4.7e-21 105.9 173 35.3
ATR0124G034 Amborella trichopoda HOM05D004173 ORTHO05D004885 6.8e-20 102.1 175 34.3
Os03g0736900 Oryza sativa ssp. japonica HOM05D004173 ORTHO05D004885 2.6e-19 100.1 164 33.5
ATR0776G079 Amborella trichopoda HOM05D004173 ORTHO05D004885 3.4e-19 99.8 176 35.2
CDE02G3998 Ceratophyllum demersum HOM05D004173 ORTHO05D004885 5.8e-19 99.0 157 35.0
HPP92_012755 Vanilla planifolia HOM05D004173 ORTHO05D004885 2.2e-18 97.1 245 29.8
Nitab4.5_0002846g0010 Nicotiana tabacum HOM05D004173 ORTHO05D004885 3.7e-18 96.3 169 38.5
SEGI_03811 Sequoiadendron giganteum HOM05D004173 ORTHO05D004885 5.4e-17 92.4 184 34.2
Nitab4.5_0000375g0240 Nicotiana tabacum HOM05D004173 ORTHO05D004885 1.2e-16 91.3 99 47.5
SEGI_33270 Sequoiadendron giganteum HOM05D004173 ORTHO05D004885 7.8e-16 88.6 180 31.7
CDE04G1376 Ceratophyllum demersum HOM05D004173 ORTHO05D004885 3.9e-15 86.3 177 31.6
Actinidia07794 Actinidia chinensis HOM05D004173 ORTHO05D004885 1.5e-14 84.3 138 38.4
Sc05g0006880 Simmondsia chinensis HOM05D004173 ORTHO05D004885 5.6e-14 82.4 159 34.6
Ah.14g087000 Amaranthus hybridus HOM05D004173 ORTHO05D004885 2.8e-13 80.1 203 31.5
Phvul.009G044000 Phaseolus vulgaris HOM05D004173 ORTHO05D004885 8.0e-13 78.6 68 57.4
CAN.G546.44 Capsicum annuum HOM05D004173 ORTHO05D004885 1.2e-11 74.7 116 36.2
Rhsim10G0215400 Rhododendron simsii HOM05D000820 ORTHO05D016785 2.6e-11 73.6 97 43.3
Pp3c2_14400 Physcomitrium patens HOM05D004173 ORTHO05D004885 3.4e-11 73.2 263 28.1
Lalb_Chr11g0067791 Lupinus albus HOM05D004173 ORTHO05D004885 7.5e-11 72.0 71 53.5
Pp3c14_17300 Physcomitrium patens HOM05D004173 ORTHO05D004885 1.9e-09 67.4 169 31.4
Dinv05055 Davidia involucrata HOM05D004173 ORTHO05D004885 4.6e-08 62.8 78 38.5


User provided reference genes

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