Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN06G1216 Fragaria x ananassa HOM05D004547 ORTHO05D005133 1.5e-284 982.2 511 100.0
FAN06G1879 Fragaria x ananassa HOM05D004547 ORTHO05D005133 1.6e-275 952.2 505 99.0
FAN03G1184 Fragaria x ananassa HOM05D004547 ORTHO05D005133 9.9e-257 889.8 505 94.1
FvH4_7g27490 Fragaria vesca HOM05D004547 ORTHO05D005133 1.3e-256 889.4 505 93.9
FAN01G0567 Fragaria x ananassa HOM05D004547 ORTHO05D005133 4.1e-255 884.4 505 93.5
RcHm_v2.0_Chr1g0374281 Rosa chinensis HOM05D004547 ORTHO05D005133 7.8e-254 880.2 505 92.7
Prupe.2G277000 Prunus persica HOM05D004547 ORTHO05D005133 3.1e-234 815.1 512 85.0
FAN10G1756 Fragaria x ananassa HOM05D004547 ORTHO05D005133 1.2e-230 803.1 434 97.0
Manes.06G134600 Manihot esculenta HOM05D004547 ORTHO05D005133 1.2e-222 776.5 509 81.1
Thecc.03G155600 Theobroma cacao HOM05D004547 ORTHO05D005133 2.7e-222 775.4 512 79.7
Duzib205G1908 Durio zibethinus HOM05D004547 ORTHO05D005133 1.8e-221 772.7 512 79.3
QL09p005748 Quercus lobata HOM05D004547 ORTHO05D005133 3.0e-221 771.9 511 80.6
CiPaw.03G093300 Carya illinoinensis HOM05D004547 ORTHO05D005133 5.1e-221 771.2 512 80.3
Atru.chr1.728 Acer truncatum HOM05D004547 ORTHO05D005133 1.9e-220 769.2 512 79.1
Potri.003G109100 Populus trichocarpa HOM05D004547 ORTHO05D005133 2.5e-220 768.8 507 79.5
Glyma.12G013000 Glycine max HOM05D004547 ORTHO05D005133 7.4e-220 767.3 511 79.1
Eucgr.A02893 Eucalyptus grandis HOM05D004547 ORTHO05D005133 2.1e-219 765.8 512 79.1
Ciclev10004313m.g Citrus clementina HOM05D004547 ORTHO05D005133 3.7e-219 765.0 512 77.9
CANSAT56G3837 Cannabis sativa HOM05D004547 ORTHO05D005133 2.4e-218 762.3 511 78.3
Cfa008167 Carpinus fangiana HOM05D004547 ORTHO05D005133 2.4e-218 762.3 512 79.9
Dinv28576 Davidia involucrata HOM05D004547 ORTHO05D005133 4.1e-218 761.5 512 79.3
PGR042G2008 Punica granatum HOM05D004547 ORTHO05D005133 1.2e-217 760.0 504 79.2
Glyma.09G224000 Glycine max HOM05D004547 ORTHO05D005133 2.0e-217 759.2 511 77.7
arahy.Tifrunner.gnm1.ann1.TL2CDN Arachis hypogaea HOM05D004547 ORTHO05D005133 2.6e-217 758.8 504 79.4
Gorai.008G216000 Gossypium raimondii HOM05D004547 ORTHO05D005133 2.6e-217 758.8 511 78.9
Cpa.g.sc3.324 Carica papaya HOM05D004547 ORTHO05D005133 5.9e-217 757.7 512 78.1
Gohir.D12G200900 Gossypium hirsutum HOM05D004547 ORTHO05D005133 7.6e-217 757.3 511 78.7
arahy.Tifrunner.gnm1.ann1.J7T2TK Arachis hypogaea HOM05D004547 ORTHO05D005133 2.2e-216 755.7 504 79.4
Gohir.A12G198300 Gossypium hirsutum HOM05D004547 ORTHO05D005133 5.0e-216 754.6 511 78.1
CSS0028755 Camellia sinensis var. sinensis HOM05D004547 ORTHO05D005133 2.5e-215 752.3 512 77.1
VMungo1127G1242 Vigna mungo HOM05D004547 ORTHO05D005133 7.2e-215 750.7 512 77.7
Sabra03G0075600 Salix brachista HOM05D004547 ORTHO05D005133 9.3e-215 750.4 580 70.7
Ca_19628_v3 Cicer arietinum L. HOM05D004547 ORTHO05D005133 1.6e-214 749.6 512 77.9
Lj3g0004511 Lotus japonicus HOM05D004547 ORTHO05D005133 2.7e-214 748.8 512 77.7
GSVIVG01018659001 Vitis vinifera HOM05D004547 ORTHO05D005133 2.7e-214 748.8 512 77.9
Hma1.2p1_0432F.1_g151750 Hydrangea macrophylla HOM05D004547 ORTHO05D005133 1.3e-213 746.5 504 77.0
Hma1.2p1_0432F.1_g151760 Hydrangea macrophylla HOM05D004547 ORTHO05D005133 1.3e-213 746.5 504 77.0
Actinidia31780 Actinidia chinensis HOM05D004547 ORTHO05D005133 3.9e-213 745.0 511 76.1
Sed0001089 Sechium edule HOM05D004547 ORTHO05D005133 1.1e-212 743.4 512 76.6
ClCG05G007360 Citrullus lanatus HOM05D004547 ORTHO05D005133 1.5e-212 743.0 512 77.5
Phvul.011G016000 Phaseolus vulgaris HOM05D004547 ORTHO05D005133 1.9e-212 742.7 511 76.7
MELO3C006811.2 Cucumis melo HOM05D004547 ORTHO05D005133 2.5e-212 742.3 512 77.1
Medtr0004s0490 Medicago truncatula HOM05D004547 ORTHO05D005133 9.7e-212 740.3 512 76.6
CsaV3_3G016130 Cucumis sativus L. HOM05D004547 ORTHO05D005133 1.6e-211 739.6 512 76.6
THA.LOC104811522 Tarenaya hassleriana HOM05D004547 ORTHO05D005133 2.8e-211 738.8 512 76.0
TAR375G0699 Trochodendron aralioides HOM05D004547 ORTHO05D005133 1.8e-210 736.1 512 76.2
Sed0008837 Sechium edule HOM05D004547 ORTHO05D005133 9.0e-210 733.8 512 76.2
Lalb_Chr03g0024271 Lupinus albus HOM05D004547 ORTHO05D005133 1.2e-209 733.4 497 77.9
BcaB08g35501 Brassica carinata HOM05D004547 ORTHO05D005133 4.5e-209 731.5 512 74.4
Lsat_1_v5_gn_9_52061 Lactuca sativa HOM05D004547 ORTHO05D005133 7.7e-209 730.7 503 75.7
BcaC04g20676 Brassica carinata HOM05D004547 ORTHO05D005133 6.5e-208 727.6 510 74.9
Rhsim03G0167200 Rhododendron simsii HOM05D004547 ORTHO05D005133 6.5e-208 727.6 511 74.6
Carub.0008s1145 Capsella rubella HOM05D004547 ORTHO05D005133 1.1e-207 726.9 512 74.6
CARHR264160 Cardamine hirsuta HOM05D004547 ORTHO05D005133 1.1e-207 726.9 512 74.2
AL8G25720 Arabidopsis lyrata HOM05D004547 ORTHO05D005133 2.5e-207 725.7 512 74.4
Nn1g01023 Nelumbo nucifera HOM05D004547 ORTHO05D005133 5.5e-207 724.5 512 74.4
Sp6g13590 Schrenkiella parvula HOM05D004547 ORTHO05D005133 5.5e-207 724.5 512 73.6
BolC9t56951H Brassica oleracea HOM05D004547 ORTHO05D005133 7.2e-207 724.2 511 75.0
AT5G51430 Arabidopsis thaliana HOM05D004547 ORTHO05D005133 1.6e-206 723.0 512 74.4
C09p40720 Brassica napus HOM05D004547 ORTHO05D005133 1.6e-206 723.0 511 74.8
HanXRQChr16g0512771 Helianthus annuus HOM05D004547 ORTHO05D005133 2.1e-206 722.6 502 75.1
Cc02_g04280 Coffea canephora HOM05D004547 ORTHO05D005133 1.4e-205 719.9 518 73.7
Aa31sc202G10 Aethionema arabicum HOM05D004547 ORTHO05D005133 1.8e-205 719.5 511 74.0
BraA10t43010Z Brassica rapa HOM05D004547 ORTHO05D005133 3.0e-205 718.8 512 74.0
Thhalv10012691m.g Eutrema salsugineum HOM05D004547 ORTHO05D005133 3.9e-205 718.4 510 74.5
Aqoxy2G03231 Aquilegia oxysepala HOM05D004547 ORTHO05D005133 5.1e-205 718.0 509 74.5
Sc14g0005530 Simmondsia chinensis HOM05D004547 ORTHO05D005133 1.5e-204 716.5 507 73.4
A02p12350 Brassica napus HOM05D004547 ORTHO05D005133 2.0e-204 716.1 513 73.5
A10p09340 Brassica napus HOM05D004547 ORTHO05D005133 4.4e-204 714.9 512 74.0
Hund13892 Selenicereus undatus HOM05D004547 ORTHO05D005133 1.3e-203 713.4 504 72.8
Medtr6g005610 Medicago truncatula HOM05D004547 ORTHO05D005133 2.2e-203 712.6 511 73.8
C02p20480 Brassica napus HOM05D004547 ORTHO05D005133 2.8e-203 712.2 513 72.7
Migut.F00479 Erythranthe guttata HOM05D004547 ORTHO05D005133 2.8e-203 712.2 504 74.0
MSTRG.8826 Avicennia marina HOM05D004547 ORTHO05D005133 3.7e-203 711.8 504 73.8
Oeu022486.1 Olea europaea HOM05D004547 ORTHO05D005133 1.1e-202 710.3 512 73.6
Peaxi162Scf00023g01214 Petunia axillaris HOM05D004547 ORTHO05D005133 4.1e-202 708.4 506 73.5
CAN.G16.15 Capsicum annuum HOM05D004547 ORTHO05D005133 5.3e-202 708.0 509 72.1
ECA232G2122 Erigeron canadensis HOM05D004547 ORTHO05D005133 5.3e-202 708.0 503 73.0
PGSC0003DMG400017618 Solanum tuberosum HOM05D004547 ORTHO05D005133 3.4e-201 705.3 510 72.7
EL10Ac2g04890 Beta vulgaris HOM05D004547 ORTHO05D005133 4.5e-201 704.9 512 71.5
SalBow5G5604 Salvia bowleyana HOM05D004547 ORTHO05D005133 4.5e-201 704.9 504 72.6
Lj1A979T84 Lonicera japonica HOM05D004547 ORTHO05D005133 1.3e-200 703.4 512 72.5
SalBow5G1900 Salvia bowleyana HOM05D004547 ORTHO05D005133 1.7e-200 703.0 504 72.4
Sopen05g002910 Solanum pennellii HOM05D004547 ORTHO05D005133 4.2e-199 698.4 510 71.8
Nitab4.5_0004665g0060 Nicotiana tabacum HOM05D004547 ORTHO05D005133 3.0e-197 692.2 511 71.8
DCAR_020189 Daucus carota HOM05D004547 ORTHO05D005133 8.8e-197 690.6 506 71.9
Ah.10g036230 Amaranthus hybridus HOM05D004547 ORTHO05D005133 5.7e-196 688.0 512 69.9
PSO266G0090 Papaver somniferum HOM05D004547 ORTHO05D005133 1.3e-195 686.8 510 72.2
PSO384G4058 Papaver somniferum HOM05D004547 ORTHO05D005133 1.4e-194 683.3 510 72.0
ATR0317G078 Amborella trichopoda HOM05D004547 ORTHO05D005133 1.8e-194 682.9 497 70.6
TWI39G0203 Tripterygium wilfordii HOM05D004547 ORTHO05D005133 3.1e-194 682.2 504 73.0
AUR62012299 Chenopodium quinoa HOM05D004547 ORTHO05D005133 1.1e-191 673.7 503 70.0
AUR62022938 Chenopodium quinoa HOM05D004547 ORTHO05D005133 5.0e-184 648.3 503 67.8
MD01G1182800 Malus domestica HOM05D004547 ORTHO05D005133 1.2e-182 643.7 396 86.4
unitig_37.g11930 Utricularia gibba HOM05D004547 ORTHO05D005133 4.7e-182 641.7 509 66.4
SGA_v2.0_scaffold44G16547 Striga asiatica HOM05D004547 ORTHO05D005133 1.5e-180 636.7 668 54.3
TPR.G20262 Trifolium pratense HOM05D004547 ORTHO05D005133 2.6e-180 636.0 508 67.9
vmacro06799 Vaccinium macrocarpon HOM05D004547 ORTHO05D005133 2.2e-179 632.9 530 65.7
HPP92_005319 Vanilla planifolia HOM05D004547 ORTHO05D005133 2.0e-177 626.3 503 67.2
TAR374G0871 Trochodendron aralioides HOM05D004547 ORTHO05D005133 2.8e-166 589.3 417 75.5
CDE04G0004 Ceratophyllum demersum HOM05D004547 ORTHO05D005133 3.7e-163 578.9 505 63.2
Medtr6g005670 Medicago truncatula HOM05D004547 ORTHO05D005133 5.6e-159 565.1 511 63.2
Zm00001eb389950 Zea mays HOM05D004547 ORTHO05D005133 1.8e-149 533.5 389 70.4
COL.COLO4_14122 Corchorus olitorius HOM05D004547 ORTHO05D005133 1.7e-147 526.9 364 75.0
Pp3c7_60 Physcomitrium patens HOM05D004547 ORTHO05D005133 9.2e-146 521.2 510 55.1
Mapoly0007s0274 Marchantia polymorpha HOM05D004547 ORTHO05D005133 1.5e-143 513.8 503 54.3
Psat0s2825g0040 Pisum sativum HOM05D004547 ORTHO05D005133 2.4e-138 496.5 357 73.1
SMO134G0015 Selaginella moellendorffii HOM05D004547 ORTHO05D005133 8.1e-126 454.9 496 49.2
CBR_g31542 Chara braunii HOM05D004547 ORTHO05D005133 4.3e-119 432.6 534 46.3
SHI14003 Sapria himalayana HOM05D004547 ORTHO05D000023 2.6e-116 423.3 362 61.6
BraA02t06300Z Brassica rapa HOM05D004547 ORTHO05D005133 1.2e-113 414.5 294 74.8
AagrBONN_evm.TU.Sc2ySwM_117.1032 Anthoceros agrestis HOM05D004547 ORTHO05D005133 6.7e-112 408.7 409 55.3
Nitab4.5_0019601g0010 Nicotiana tabacum HOM05D004547 ORTHO05D005133 1.1e-101 374.8 257 76.3
CARHR150020 Cardamine hirsuta HOM05D004547 ORTHO05D005133 2.2e-94 350.5 276 65.6
BcaC03g14608 Brassica carinata HOM05D004547 ORTHO05D005133 1.0e-80 305.1 197 77.7
Nitab4.5_0000895g0220 Nicotiana tabacum HOM05D004547 ORTHO05D005133 8.5e-75 285.4 197 73.1
Solyc05g006950.4 Solanum lycopersicum HOM05D004547 ORTHO05D005133 5.2e-72 276.2 197 71.1
CDE04G2539 Ceratophyllum demersum HOM05D004547 ORTHO05D005133 3.0e-64 250.4 283 52.7
SEGI_08321 Sequoiadendron giganteum HOM05D004547 ORTHO05D005133 1.4e-61 241.5 211 61.6
Os06g0669600 Oryza sativa ssp. japonica HOM05D004547 ORTHO05D005133 1.9e-58 231.1 179 68.7
PRCOL_00005609 Prasinoderma coloniale HOM05D004547 ORTHO05D005133 5.5e-58 229.6 503 32.8
QL10p003704 Quercus lobata HOM05D004547 ORTHO05D005133 6.8e-56 222.6 209 65.6
HPP92_005328 Vanilla planifolia HOM05D004547 ORTHO05D005133 1.3e-54 218.4 142 76.8
Actinidia24695 Actinidia chinensis HOM05D004547 ORTHO05D005133 8.3e-54 215.7 130 81.5
MD07G1253700 Malus domestica HOM05D004547 ORTHO05D005133 6.0e-44 183.0 105 93.3
TPR.G196 Trifolium pratense HOM05D004547 ORTHO05D005133 7.8e-44 182.6 115 80.0
Cre02.g086700 Chlamydomonas reinhardtii HOM05D004547 ORTHO05D005133 6.2e-41 172.9 499 27.7
MD07G1253600 Malus domestica HOM05D004547 ORTHO05D005133 9.8e-39 165.6 100 88.0
TAR082G0001 Trochodendron aralioides HOM05D004547 ORTHO05D005133 1.6e-33 148.3 97 74.2
Sc14g0005510 Simmondsia chinensis HOM05D004547 ORTHO05D005133 2.3e-32 144.4 95 74.7
FvH4_7g19100 Fragaria vesca HOM05D004547 ORTHO05D005133 6.8e-32 142.9 87 93.1
SEGI_13446 Sequoiadendron giganteum HOM05D004547 ORTHO05D005133 2.0e-31 141.4 95 73.7
COL.COLO4_14121 Corchorus olitorius HOM05D004547 ORTHO05D005133 3.5e-28 130.6 80 88.8
Actinidia01052 Actinidia chinensis HOM05D004547 ORTHO05D005133 5.1e-27 126.7 95 66.3
FAN06G3837 Fragaria x ananassa HOM05D004547 ORTHO05D005133 1.8e-24 118.2 72 91.7
Psat7g163200 Pisum sativum HOM05D004547 ORTHO05D005133 5.2e-24 116.7 151 48.3
SEGI_05738 Sequoiadendron giganteum HOM05D004547 ORTHO05D005133 1.5e-23 115.2 75 77.3
Nitab4.5_0004558g0010 Nicotiana tabacum HOM05D004547 ORTHO05D016189 3.2e-21 107.5 164 40.9
CAN.G74.49 Capsicum annuum HOM05D004547 ORTHO05D005133 1.7e-19 101.7 84 64.3
SEGI_29591 Sequoiadendron giganteum HOM05D004547 ORTHO05D005133 1.9e-18 98.2 99 47.5
Duzib147G0620 Durio zibethinus HOM05D004547 ORTHO05D005133 1.2e-17 95.5 92 56.5
Oeu042559.1 Olea europaea HOM05D004547 ORTHO05D005133 2.8e-17 94.4 80 65.0
CAN.G689.6 Capsicum annuum HOM05D004547 ORTHO05D005133 8.1e-17 92.8 79 64.6
CAN.G280.11 Capsicum annuum HOM05D004547 ORTHO05D005133 3.1e-16 90.9 72 65.3
Haze_23095 Corylus avellana HOM05D001506 ORTHO05D000455 1.5e-15 88.6 133 48.9
CAN.G903.1 Capsicum annuum HOM05D004547 ORTHO05D005133 5.8e-15 86.7 81 58.0
Nitab4.5_0011021g0010 Nicotiana tabacum HOM05D001522 ORTHO05D016189 2.1e-12 78.2 158 36.7
CAN.G118.7 Capsicum annuum HOM05D004547 ORTHO05D005133 7.8e-12 76.3 77 58.4
CDE04G0650 Ceratophyllum demersum HOM05D004547 ORTHO05D005133 4.0e-08 63.9 44 75.0
Pp3c11_26770 Physcomitrium patens HOM05D004547 ORTHO05D005133 5.3e-08 63.5 67 49.3


User provided reference genes

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