Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN06G1157 Fragaria x ananassa HOM05D003699 ORTHO05D004474 9.3e-59 229.9 112 100.0
FAN10G1328 Fragaria x ananassa HOM05D003699 ORTHO05D004474 5.6e-56 220.7 110 97.3
FAN03G3475 Fragaria x ananassa HOM05D003699 ORTHO05D004474 5.1e-41 171.0 95 88.4
RcHm_v2.0_Chr1g0375981 Rosa chinensis HOM05D003699 ORTHO05D004474 9.7e-32 140.2 99 70.7
Prupe.2G285700 Prunus persica HOM05D003699 ORTHO05D004474 5.3e-30 134.4 99 67.7
TAR375G0673 Trochodendron aralioides HOM05D003699 ORTHO05D004474 3.4e-29 131.7 99 66.7
CiPaw.04G064600 Carya illinoinensis HOM05D003699 ORTHO05D004474 5.0e-28 127.9 99 63.6
Haze_13802 Corylus avellana HOM05D003699 ORTHO05D004474 6.5e-28 127.5 99 63.6
QL12p039078 Quercus lobata HOM05D003699 ORTHO05D004474 8.5e-28 127.1 99 61.6
Cfa008249 Carpinus fangiana HOM05D003699 ORTHO05D004474 1.1e-27 126.7 99 63.6
Rhsim03G0173500 Rhododendron simsii HOM05D003699 ORTHO05D004474 2.5e-27 125.6 99 61.6
Hma1.2p1_0488F.1_g163830 Hydrangea macrophylla HOM05D003699 ORTHO05D004474 3.2e-27 125.2 99 63.6
Aqoxy7G00521 Aquilegia oxysepala HOM05D003699 ORTHO05D004474 5.5e-27 124.4 94 62.8
CDE08G1313 Ceratophyllum demersum HOM05D003699 ORTHO05D004474 7.2e-27 124.0 99 59.6
Dinv28516 Davidia involucrata HOM05D003699 ORTHO05D004474 7.2e-27 124.0 99 63.6
MBI04_g06627_MAGBIO Magnolia biondii HOM05D003699 ORTHO05D004474 9.4e-27 123.6 99 61.6
EL10Ac3g05759 Beta vulgaris HOM05D003699 ORTHO05D004474 1.6e-26 122.9 103 59.2
Cc02_g03690 Coffea canephora HOM05D003699 ORTHO05D004474 2.7e-26 122.1 104 59.6
Glyma.09G150200 Glycine max HOM05D003699 ORTHO05D004474 3.6e-26 121.7 99 60.6
Oeu030154.1 Olea europaea HOM05D003699 ORTHO05D004474 3.6e-26 121.7 99 59.6
Hund04668 Selenicereus undatus HOM05D003699 ORTHO05D004474 6.1e-26 120.9 99 60.6
Lj2g0006173 Lotus japonicus HOM05D003699 ORTHO05D004474 1.4e-25 119.8 99 59.6
Nn1g01150 Nelumbo nucifera HOM05D003699 ORTHO05D004474 3.9e-25 118.2 89 65.2
Cpa.g.sc4.178 Carica papaya HOM05D003699 ORTHO05D004474 6.7e-25 117.5 99 57.6
Actinidia32916 Actinidia chinensis HOM05D003699 ORTHO05D004474 8.8e-25 117.1 104 54.8
Glyma.16G201600 Glycine max HOM05D003699 ORTHO05D004474 8.8e-25 117.1 99 58.6
CANSAT21G1948 Cannabis sativa HOM05D003699 ORTHO05D004474 1.5e-24 116.3 99 59.6
AUR62016075 Chenopodium quinoa HOM05D003699 ORTHO05D004474 1.5e-24 116.3 103 58.3
SalBow4G1619 Salvia bowleyana HOM05D003699 ORTHO05D004474 1.3e-23 113.2 99 57.6
Ah.07g208500 Amaranthus hybridus HOM05D003699 ORTHO05D004474 1.7e-23 112.8 103 54.4
Migut.F00407 Erythranthe guttata HOM05D003699 ORTHO05D004474 2.2e-23 112.5 99 56.6
Lalb_Chr03g0032981 Lupinus albus HOM05D003699 ORTHO05D004474 2.2e-23 112.5 99 54.5
Phvul.004G124500 Phaseolus vulgaris HOM05D003699 ORTHO05D004474 4.8e-23 111.3 99 56.6
VMungo0464G0389 Vigna mungo HOM05D003699 ORTHO05D004474 4.8e-23 111.3 99 57.6
Eucgr.K00135 Eucalyptus grandis HOM05D003699 ORTHO05D004474 6.3e-23 110.9 99 52.5
SGA_v2.0_scaffold184G39954 Striga asiatica HOM05D000015 ORTHO05D000270 1.4e-22 109.8 94 55.3
SEGI_11650 Sequoiadendron giganteum HOM05D003699 ORTHO05D004474 1.8e-22 109.4 94 54.3
Oeu017569.2 Olea europaea HOM05D003699 ORTHO05D004474 2.4e-22 109.0 103 51.5
vmacro06753 Vaccinium macrocarpon HOM05D003699 ORTHO05D004474 3.1e-22 108.6 99 53.5
ATR0618G031 Amborella trichopoda HOM05D003699 ORTHO05D004474 4.1e-22 108.2 103 51.5
Lj8A71T56 Lonicera japonica HOM05D003699 ORTHO05D004474 4.1e-22 108.2 103 51.5
Duzib128G1461 Durio zibethinus HOM05D003699 ORTHO05D004474 7.0e-22 107.5 103 51.5
Manes.06G140300 Manihot esculenta HOM05D003699 ORTHO05D004474 7.0e-22 107.5 100 55.0
Hund15969 Selenicereus undatus HOM05D003699 ORTHO05D004474 9.1e-22 107.1 101 49.5
Hma1.2p1_1409F.1_g281620 Hydrangea macrophylla HOM05D003699 ORTHO05D004474 1.2e-21 106.7 103 49.5
Thecc.10G023400 Theobroma cacao HOM05D003699 ORTHO05D004474 1.2e-21 106.7 103 50.5
TAR633G0267 Trochodendron aralioides HOM05D003699 ORTHO05D004474 1.6e-21 106.3 103 49.5
Cpa.g.sc19.204 Carica papaya HOM05D003699 ORTHO05D004474 2.0e-21 105.9 103 50.5
Eucgr.G03038 Eucalyptus grandis HOM05D003699 ORTHO05D004474 2.0e-21 105.9 103 50.5
Glyma.02G255100 Glycine max HOM05D003699 ORTHO05D004474 2.6e-21 105.5 103 49.5
Psat2g034840 Pisum sativum HOM05D003699 ORTHO05D004474 2.6e-21 105.5 103 50.5
Aqoxy2G00938 Aquilegia oxysepala HOM05D003699 ORTHO05D004474 3.5e-21 105.1 103 49.5
DCAR_027549 Daucus carota HOM05D003699 ORTHO05D004474 3.5e-21 105.1 103 49.5
Medtr5g082110 Medicago truncatula HOM05D003699 ORTHO05D004474 3.5e-21 105.1 103 50.5
Phvul.008G225700 Phaseolus vulgaris HOM05D003699 ORTHO05D004474 3.5e-21 105.1 103 48.5
SalBow6G1828 Salvia bowleyana HOM05D003699 ORTHO05D004474 3.5e-21 105.1 103 49.5
VMungo0647G0453 Vigna mungo HOM05D003699 ORTHO05D004474 3.5e-21 105.1 103 48.5
Dinv34414 Davidia involucrata HOM05D003699 ORTHO05D004474 4.5e-21 104.8 103 50.5
Manes.07G126700 Manihot esculenta HOM05D003699 ORTHO05D004474 4.5e-21 104.8 103 50.5
Manes.10G016400 Manihot esculenta HOM05D003699 ORTHO05D004474 4.5e-21 104.8 103 50.5
Rhsim08G0206900 Rhododendron simsii HOM05D003699 ORTHO05D004474 4.5e-21 104.8 103 50.5
TWI53G0524 Tripterygium wilfordii HOM05D003699 ORTHO05D004474 4.5e-21 104.8 103 50.5
MSTRG.8317 Avicennia marina HOM05D003699 ORTHO05D004474 5.9e-21 104.4 103 49.5
HPP92_012632 Vanilla planifolia HOM05D003699 ORTHO05D004474 5.9e-21 104.4 103 52.4
CANSAT56G1358 Cannabis sativa HOM05D003699 ORTHO05D004474 7.7e-21 104.0 103 48.5
Cc02_g06810 Coffea canephora HOM05D003699 ORTHO05D004474 7.7e-21 104.0 103 50.5
arahy.Tifrunner.gnm1.ann1.DW27I3 Arachis hypogaea HOM05D003699 ORTHO05D004474 1.0e-20 103.6 103 49.5
arahy.Tifrunner.gnm1.ann1.KJJE32 Arachis hypogaea HOM05D003699 ORTHO05D004474 1.0e-20 103.6 103 49.5
Ca_05944_v3 Cicer arietinum L. HOM05D003699 ORTHO05D004474 1.0e-20 103.6 103 49.5
TPR.G19864 Trifolium pratense HOM05D003699 ORTHO05D004474 1.0e-20 103.6 103 50.5
Nn6g34343 Nelumbo nucifera HOM05D003699 ORTHO05D004474 1.3e-20 103.2 101 55.4
MSTRG.222 Avicennia marina HOM05D003699 ORTHO05D004474 1.7e-20 102.8 103 48.5
CiPaw.02G190700 Carya illinoinensis HOM05D003699 ORTHO05D004474 1.7e-20 102.8 101 49.5
Duzib114G0850 Durio zibethinus HOM05D003699 ORTHO05D004474 1.7e-20 102.8 103 49.5
ECA233G4954 Erigeron canadensis HOM05D006949 ORTHO05D008621 1.7e-20 102.8 103 51.5
A09p48820 Brassica napus HOM05D003699 ORTHO05D004474 2.2e-20 102.4 103 48.5
C08p31150 Brassica napus HOM05D003699 ORTHO05D004474 2.2e-20 102.4 103 48.5
BolC8t50736H Brassica oleracea HOM05D003699 ORTHO05D004474 2.2e-20 102.4 103 48.5
BraA09t40335Z Brassica rapa HOM05D003699 ORTHO05D004474 2.2e-20 102.4 103 48.5
Gohir.D04G066900 Gossypium hirsutum HOM05D003699 ORTHO05D004474 2.2e-20 102.4 103 48.5
Gorai.012G075900 Gossypium raimondii HOM05D003699 ORTHO05D004474 2.2e-20 102.4 103 48.5
MBI14_g09435_MAGBIO Magnolia biondii HOM05D003699 ORTHO05D004474 2.2e-20 102.4 103 48.5
Aa31LG5G19610 Aethionema arabicum HOM05D003699 ORTHO05D004474 2.9e-20 102.1 103 47.6
arahy.Tifrunner.gnm1.ann1.68I314 Arachis hypogaea HOM05D003699 ORTHO05D004474 2.9e-20 102.1 99 53.5
Migut.F01417 Erythranthe guttata HOM05D003699 ORTHO05D004474 2.9e-20 102.1 103 48.5
Lalb_Chr04g0250691 Lupinus albus HOM05D003699 ORTHO05D004474 2.9e-20 102.1 103 47.6
Nn2g11418 Nelumbo nucifera HOM05D003699 ORTHO05D004474 2.9e-20 102.1 103 47.6
SMO364G0532 Selaginella moellendorffii HOM05D003699 ORTHO05D004474 2.9e-20 102.1 103 49.5
Sc14g0005270 Simmondsia chinensis HOM05D003699 ORTHO05D004474 2.9e-20 102.1 103 49.5
SMO197G0083 Selaginella moellendorffii HOM05D003699 ORTHO05D004474 3.8e-20 101.7 103 48.5
arahy.Tifrunner.gnm1.ann1.8Y7MPM Arachis hypogaea HOM05D003699 ORTHO05D004474 5.0e-20 101.3 99 53.5
arahy.Tifrunner.gnm1.ann1.VSX1SJ Arachis hypogaea HOM05D003699 ORTHO05D004474 5.0e-20 101.3 99 53.5
CSS0013577 Camellia sinensis var. sinensis HOM05D003699 ORTHO05D004474 5.0e-20 101.3 103 47.6
Haze_17194 Corylus avellana HOM05D003699 ORTHO05D004474 5.0e-20 101.3 103 47.6
Gohir.A05G316100 Gossypium hirsutum HOM05D003699 ORTHO05D004474 5.0e-20 101.3 103 47.6
Lsat_1_v5_gn_2_121421 Lactuca sativa HOM05D003699 ORTHO05D004474 5.0e-20 101.3 103 49.5
Lj6g0001965 Lotus japonicus HOM05D003699 ORTHO05D004474 5.0e-20 101.3 103 48.5
LjContig00357g0025877 Lotus japonicus HOM05D003699 ORTHO05D004474 5.0e-20 101.3 103 48.5
Lalb_Chr17g0346661 Lupinus albus HOM05D003699 ORTHO05D004474 5.0e-20 101.3 103 49.5
EL10Ac2g04802 Beta vulgaris HOM05D003699 ORTHO05D004474 6.5e-20 100.9 103 46.6
Potri.008G065800 Populus trichocarpa HOM05D003699 ORTHO05D004474 6.5e-20 100.9 103 49.5
PGR142G0530 Punica granatum HOM05D003699 ORTHO05D004474 6.5e-20 100.9 103 47.6
BcaB01g00058 Brassica carinata HOM05D003699 ORTHO05D004474 8.5e-20 100.5 103 47.6
AUR62022855 Chenopodium quinoa HOM05D003699 ORTHO05D004474 8.5e-20 100.5 103 47.6
Thhalv10010522m.g Eutrema salsugineum HOM05D003699 ORTHO05D004474 1.1e-19 100.1 103 47.6
Lj1C951T5 Lonicera japonica HOM05D003699 ORTHO05D004474 1.1e-19 100.1 103 47.6
Lalb_Chr10g0105061 Lupinus albus HOM05D003699 ORTHO05D004474 1.1e-19 100.1 103 48.5
Prupe.2G247400 Prunus persica HOM05D003699 ORTHO05D004474 1.1e-19 100.1 103 47.6
Sp5g06650 Schrenkiella parvula HOM05D003699 ORTHO05D004474 1.1e-19 100.1 103 48.5
TWI09G1096 Tripterygium wilfordii HOM05D003699 ORTHO05D004474 1.1e-19 100.1 103 48.5
THA.LOC104810061 Tarenaya hassleriana HOM05D003699 ORTHO05D004474 1.5e-19 99.8 103 46.6
CiPaw.01G296600 Carya illinoinensis HOM05D003699 ORTHO05D004474 1.9e-19 99.4 99 49.5
AUR62012223 Chenopodium quinoa HOM05D003699 ORTHO05D004474 1.9e-19 99.4 103 46.6
DCAR_011795 Daucus carota HOM05D003699 ORTHO05D004474 1.9e-19 99.4 103 45.6
MD01G1148500 Malus domestica HOM05D003699 ORTHO05D004474 1.9e-19 99.4 103 45.6
RcHm_v2.0_Chr1g0369551 Rosa chinensis HOM05D003699 ORTHO05D004474 3.2e-19 98.6 103 46.6
unitig_62.g23932 Utricularia gibba HOM05D003699 ORTHO05D004474 3.2e-19 98.6 103 48.5
Cfa001354 Carpinus fangiana HOM05D003699 ORTHO05D004474 4.2e-19 98.2 103 45.6
FAN01G2395 Fragaria x ananassa HOM05D003699 ORTHO05D004474 4.2e-19 98.2 103 46.6
FAN10G1948 Fragaria x ananassa HOM05D003699 ORTHO05D004474 4.2e-19 98.2 103 46.6
Potri.010G191700 Populus trichocarpa HOM05D003699 ORTHO05D004474 4.2e-19 98.2 103 47.6
PSO210G5252 Papaver somniferum HOM05D003699 ORTHO05D004474 5.5e-19 97.8 99 49.5
Sabra08G0048200 Salix brachista HOM05D003699 ORTHO05D004474 5.5e-19 97.8 103 48.5
Sed0020578 Sechium edule HOM05D003699 ORTHO05D004474 5.5e-19 97.8 103 46.6
THA.LOC104824308 Tarenaya hassleriana HOM05D003699 ORTHO05D004474 5.5e-19 97.8 103 46.6
GSVIVG01032860001 Vitis vinifera HOM05D003699 ORTHO05D004474 5.5e-19 97.8 103 45.6
arahy.Tifrunner.gnm1.ann1.828BJC Arachis hypogaea HOM05D003699 ORTHO05D004474 7.2e-19 97.4 103 46.6
arahy.Tifrunner.gnm1.ann1.DF90RT Arachis hypogaea HOM05D003699 ORTHO05D004474 7.2e-19 97.4 103 46.6
FAN03G3166 Fragaria x ananassa HOM05D003699 ORTHO05D004474 7.2e-19 97.4 103 46.6
HanXRQChr07g0202501 Helianthus annuus HOM05D003699 ORTHO05D004474 7.2e-19 97.4 103 48.5
Os06g0705000 Oryza sativa ssp. japonica HOM05D003699 ORTHO05D004474 9.4e-19 97.1 103 47.6
CARHR165940 Cardamine hirsuta HOM05D003699 ORTHO05D004474 1.2e-18 96.7 103 46.6
ClCG07G004050 Citrullus lanatus HOM05D003699 ORTHO05D004474 1.2e-18 96.7 104 48.1
Ciclev10032067m.g Citrus clementina HOM05D003699 ORTHO05D004474 1.2e-18 96.7 103 46.6
Atru.chr10.101 Acer truncatum HOM05D003699 ORTHO05D004474 1.6e-18 96.3 103 44.7
Atru.chr10.119 Acer truncatum HOM05D003699 ORTHO05D004474 1.6e-18 96.3 103 44.7
FvH4_7g24130 Fragaria vesca HOM05D003699 ORTHO05D004474 1.6e-18 96.3 103 46.6
FAN06G2830 Fragaria x ananassa HOM05D003699 ORTHO05D004474 1.6e-18 96.3 103 46.6
AT3G55830 Arabidopsis thaliana HOM05D003699 ORTHO05D004474 2.1e-18 95.9 103 45.6
Carub.0005s2261 Capsella rubella HOM05D003699 ORTHO05D004474 2.1e-18 95.9 103 45.6
MD07G1215500 Malus domestica HOM05D003699 ORTHO05D004474 2.1e-18 95.9 103 43.7
Pp3c7_11620 Physcomitrium patens HOM05D003699 ORTHO05D004474 2.7e-18 95.5 100 46.0
SMO356G0263 Selaginella moellendorffii HOM05D003699 ORTHO05D004474 2.7e-18 95.5 103 46.6
AagrBONN_evm.TU.Sc2ySwM_344.2984 Anthoceros agrestis HOM05D003699 ORTHO05D004474 3.6e-18 95.1 104 45.2
AL5G37120 Arabidopsis lyrata HOM05D003699 ORTHO05D004474 3.6e-18 95.1 103 45.6
MELO3C034122.2 Cucumis melo HOM05D003699 ORTHO05D004474 4.0e-17 91.7 89 49.4
CsaV3_5G008970 Cucumis sativus L. HOM05D003699 ORTHO05D004474 4.0e-17 91.7 100 48.0
Mapoly0006s0046 Marchantia polymorpha HOM05D003699 ORTHO05D004474 8.8e-17 90.5 99 42.4
Dinv20964 Davidia involucrata HOM05D003699 ORTHO05D004474 1.7e-15 86.3 145 35.9
Dinv20979 Davidia involucrata HOM05D003699 ORTHO05D004474 1.7e-15 86.3 145 35.9
FvH4_7g27500 Fragaria vesca HOM05D003699 ORTHO05D004474 1.6e-13 79.7 41 90.2
Actinidia13534 Actinidia chinensis HOM05D003699 ORTHO05D004474 1.1e-11 73.6 71 54.9
CSS0037512 Camellia sinensis var. sinensis HOM05D003699 ORTHO05D004474 2.5e-11 72.4 62 54.8
Thecc.03G165400 Theobroma cacao HOM05D003699 ORTHO05D004474 1.6e-10 69.7 77 46.8
SEGI_16324 Sequoiadendron giganteum HOM05D003699 ORTHO05D004474 2.7e-10 68.9 57 57.9
ATR0661G209 Amborella trichopoda HOM05D003699 ORTHO05D004474 4.7e-10 68.2 56 58.9
AUR62021284 Chenopodium quinoa HOM05D003699 ORTHO05D004474 6.1e-10 67.8 56 58.9
FAN06G2762 Fragaria x ananassa HOM05D003699 ORTHO05D004474 2.3e-09 65.9 40 80.0
vmacro06985 Vaccinium macrocarpon HOM05D003699 ORTHO05D004474 2.3e-09 65.9 69 47.8
Glyma.14G061400 Glycine max HOM05D003699 ORTHO05D004474 5.2e-09 64.7 56 53.6
ECA238G4741 Erigeron canadensis HOM05D003699 ORTHO05D004474 1.2e-08 63.5 62 51.6
COL.COLO4_25638 Corchorus olitorius HOM05D003699 ORTHO05D004474 2.0e-08 62.8 56 53.6
Actinidia29685 Actinidia chinensis HOM05D003699 ORTHO05D004474 1.8e-06 56.2 52 48.1


User provided reference genes

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