Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN06G1142 Fragaria x ananassa HOM05D004114 ORTHO05D004667 1.7e-67 259.2 130 100.0
FvH4_1g27570 Fragaria vesca HOM05D004114 ORTHO05D004667 5.0e-48 194.5 101 94.1
FAN19G0092 Fragaria x ananassa HOM05D004114 ORTHO05D004667 4.4e-44 181.4 101 92.1
FvH4_1g27340 Fragaria vesca HOM05D004114 ORTHO05D004667 8.3e-43 177.2 115 81.7
FAN26G0366 Fragaria x ananassa HOM05D004114 ORTHO05D004667 1.9e-42 176.0 101 91.1
FvH4_3g28860 Fragaria vesca HOM05D004114 ORTHO05D004667 1.0e-40 170.2 134 70.9
FAN11G0384 Fragaria x ananassa HOM05D004114 ORTHO05D004667 1.3e-40 169.9 134 70.1
FAN21G1677 Fragaria x ananassa HOM05D004114 ORTHO05D004667 3.9e-40 168.3 134 70.1
FvH4_7g05120 Fragaria vesca HOM05D004114 ORTHO05D004667 3.3e-39 165.2 85 97.6
FAN16G1351 Fragaria x ananassa HOM05D004114 ORTHO05D004667 7.3e-39 164.1 134 67.9
FAN23G2589 Fragaria x ananassa HOM05D004114 ORTHO05D004667 1.1e-37 160.2 132 68.2
FAN25G0168 Fragaria x ananassa HOM05D004114 ORTHO05D004667 1.1e-37 160.2 134 67.9
RcHm_v2.0_Chr5g0052041 Rosa chinensis HOM05D004114 ORTHO05D004667 5.2e-37 157.9 134 66.4
FvH4_1g30480 Fragaria vesca HOM05D001826 ORTHO05D015538 7.5e-36 154.1 85 90.6
MD03G1175100 Malus domestica HOM05D004114 ORTHO05D004667 1.9e-31 139.4 132 59.1
MD11G1193200 Malus domestica HOM05D004114 ORTHO05D004667 1.1e-29 133.7 132 56.1
Prupe.4G249300 Prunus persica HOM05D004114 ORTHO05D004667 2.0e-28 129.4 132 56.1
QL01p004694 Quercus lobata HOM05D004114 ORTHO05D004667 3.4e-28 128.6 132 56.1
FAN28G1325 Fragaria x ananassa HOM05D004114 ORTHO05D004667 1.1e-26 123.6 72 87.5
arahy.Tifrunner.gnm1.ann1.Q5U408 Arachis hypogaea HOM05D004114 ORTHO05D004667 1.4e-26 123.2 132 52.3
Phvul.008G283500 Phaseolus vulgaris HOM05D004114 ORTHO05D004667 1.4e-26 123.2 132 53.8
Atru.chr3.2717 Acer truncatum HOM05D004114 ORTHO05D004667 2.4e-26 122.5 132 54.5
arahy.Tifrunner.gnm1.ann1.4V7EDQ Arachis hypogaea HOM05D004114 ORTHO05D004667 2.4e-26 122.5 132 52.3
arahy.Tifrunner.gnm1.ann1.49TU8N Arachis hypogaea HOM05D004114 ORTHO05D004667 3.2e-26 122.1 132 51.5
TPR.G1262 Trifolium pratense HOM05D004114 ORTHO05D004667 5.4e-26 121.3 132 53.0
Psat2g005360 Pisum sativum HOM05D004114 ORTHO05D004667 7.1e-26 120.9 132 53.8
TWI60G1569 Tripterygium wilfordii HOM05D004114 ORTHO05D004667 1.2e-25 120.2 132 52.3
TAR633G1524 Trochodendron aralioides HOM05D004114 ORTHO05D004667 1.6e-25 119.8 132 53.0
VMungo0647G1293 Vigna mungo HOM05D004114 ORTHO05D004667 1.6e-25 119.8 132 50.8
Glyma.18G070400 Glycine max HOM05D004114 ORTHO05D004667 2.1e-25 119.4 132 53.0
Potri.009G053400 Populus trichocarpa HOM05D004114 ORTHO05D004667 3.5e-25 118.6 132 53.0
Actinidia23972 Actinidia chinensis HOM05D004114 ORTHO05D004667 4.6e-25 118.2 132 53.0
FAN19G1745 Fragaria x ananassa HOM05D004114 ORTHO05D004667 4.6e-25 118.2 67 89.6
Ca_06427_v3 Cicer arietinum L. HOM05D004114 ORTHO05D004667 7.8e-25 117.5 132 52.3
Ciclev10014795m.g Citrus clementina HOM05D004114 ORTHO05D004667 7.8e-25 117.5 132 54.5
Psat3g081440 Pisum sativum HOM05D004114 ORTHO05D004667 1.0e-24 117.1 129 54.3
Sabra09G0038900 Salix brachista HOM05D004114 ORTHO05D004667 1.0e-24 117.1 132 52.3
Glyma.08G335400 Glycine max HOM05D004114 ORTHO05D004667 1.3e-24 116.7 132 51.5
Phvul.006G062700 Phaseolus vulgaris HOM05D004114 ORTHO05D004667 1.3e-24 116.7 132 51.5
Cfa009771 Carpinus fangiana HOM05D004114 ORTHO05D004667 1.7e-24 116.3 132 50.8
TWI34G1345 Tripterygium wilfordii HOM05D004114 ORTHO05D004667 2.3e-24 115.9 132 50.8
Dinv22178 Davidia involucrata HOM05D004114 ORTHO05D004667 3.9e-24 115.2 132 52.3
Dinv36259 Davidia involucrata HOM05D004114 ORTHO05D004667 6.6e-24 114.4 132 50.8
ClCG03G013250 Citrullus lanatus HOM05D004114 ORTHO05D004667 8.6e-24 114.0 132 48.5
COL.COLO4_07585 Corchorus olitorius HOM05D004114 ORTHO05D004667 1.1e-23 113.6 132 51.5
CSS0048735 Camellia sinensis var. sinensis HOM05D004114 ORTHO05D004667 1.5e-23 113.2 132 50.0
Lalb_Chr15g0082581 Lupinus albus HOM05D004114 ORTHO05D004667 1.5e-23 113.2 134 49.3
Sed0020827 Sechium edule HOM05D004114 ORTHO05D004667 1.5e-23 113.2 132 51.5
Actinidia06341 Actinidia chinensis HOM05D004114 ORTHO05D004667 2.5e-23 112.5 132 50.0
LjContig00081g0000990 Lotus japonicus HOM05D004114 ORTHO05D004667 2.5e-23 112.5 132 50.0
Thecc.09G233600 Theobroma cacao HOM05D004114 ORTHO05D004667 2.5e-23 112.5 132 48.5
Glyma.02G304000 Glycine max HOM05D004114 ORTHO05D004667 4.3e-23 111.7 132 50.0
Lalb_Chr18g0050571 Lupinus albus HOM05D004114 ORTHO05D004667 4.3e-23 111.7 134 50.0
Medtr5g096860 Medicago truncatula HOM05D004114 ORTHO05D004667 4.3e-23 111.7 132 51.5
Gohir.D09G111100 Gossypium hirsutum HOM05D004114 ORTHO05D004667 5.6e-23 111.3 132 50.0
Gorai.006G128700 Gossypium raimondii HOM05D004114 ORTHO05D004667 5.6e-23 111.3 132 50.0
MELO3C015192.2 Cucumis melo HOM05D004114 ORTHO05D004667 7.3e-23 110.9 132 47.0
CsaV3_1G042830 Cucumis sativus L. HOM05D004114 ORTHO05D004667 7.3e-23 110.9 132 47.0
vmacro12717 Vaccinium macrocarpon HOM05D004114 ORTHO05D004667 7.3e-23 110.9 132 49.2
Duzib150G0789 Durio zibethinus HOM05D004114 ORTHO05D004667 9.5e-23 110.5 132 48.5
CANSAT54G0770 Cannabis sativa HOM05D004114 ORTHO05D004667 1.2e-22 110.2 132 50.0
Gohir.A09G114400 Gossypium hirsutum HOM05D004114 ORTHO05D004667 1.2e-22 110.2 132 50.0
CiPaw.13G160800 Carya illinoinensis HOM05D004114 ORTHO05D004667 1.6e-22 109.8 132 50.0
GSVIVG01025259001 Vitis vinifera HOM05D004114 ORTHO05D004667 1.6e-22 109.8 132 50.8
Oeu043295.1 Olea europaea HOM05D004114 ORTHO05D004667 2.1e-22 109.4 132 47.7
Duzib168G0105 Durio zibethinus HOM05D004114 ORTHO05D004667 3.6e-22 108.6 132 47.7
Eucgr.J00767 Eucalyptus grandis HOM05D004114 ORTHO05D004667 6.2e-22 107.8 132 47.7
Cpa.g.sc84.54 Carica papaya HOM05D004114 ORTHO05D004667 8.1e-22 107.5 102 59.8
TAR636G2716 Trochodendron aralioides HOM05D004114 ORTHO05D004667 8.1e-22 107.5 132 51.5
Oeu015664.1 Olea europaea HOM05D004114 ORTHO05D004667 1.4e-21 106.7 132 46.2
Psat4g064240 Pisum sativum HOM05D004114 ORTHO05D004667 2.4e-21 105.9 122 50.8
Lj1A330G24 Lonicera japonica HOM05D004114 ORTHO05D004667 3.1e-21 105.5 134 49.3
PGR119G0430 Punica granatum HOM05D004114 ORTHO05D004667 3.1e-21 105.5 132 48.5
Haze_23137 Corylus avellana HOM05D004114 ORTHO05D004667 6.8e-21 104.4 162 42.6
Hund07507 Selenicereus undatus HOM05D004114 ORTHO05D004667 1.2e-20 103.6 132 46.2
Aqoxy2G00130 Aquilegia oxysepala HOM05D004114 ORTHO05D004667 2.0e-20 102.8 132 46.2
THA.LOC104817907 Tarenaya hassleriana HOM05D004114 ORTHO05D004667 2.0e-20 102.8 132 44.7
arahy.Tifrunner.gnm1.ann1.JLH2AW Arachis hypogaea HOM05D004114 ORTHO05D004667 1.3e-19 100.1 132 43.9
arahy.Tifrunner.gnm1.ann1.V027MD Arachis hypogaea HOM05D004114 ORTHO05D004667 1.3e-19 100.1 132 43.9
PSO339G0497 Papaver somniferum HOM05D004114 ORTHO05D004667 1.3e-19 100.1 132 47.0
DCAR_029951 Daucus carota HOM05D004114 ORTHO05D004667 1.7e-19 99.8 132 44.7
Nn2g15370 Nelumbo nucifera HOM05D004114 ORTHO05D004667 1.7e-19 99.8 132 45.5
ATR0332G053 Amborella trichopoda HOM05D004114 ORTHO05D004667 2.2e-19 99.4 132 46.2
MSTRG.12468 Avicennia marina HOM05D004114 ORTHO05D004667 2.9e-19 99.0 132 40.2
SGA_v2.0_scaffold42G16101 Striga asiatica HOM05D004114 ORTHO05D004667 3.8e-19 98.6 132 44.7
AT1G51350 Arabidopsis thaliana HOM05D004114 ORTHO05D004667 2.4e-18 95.9 132 43.2
Nitab4.5_0001587g0080 Nicotiana tabacum HOM05D004114 ORTHO05D004667 3.2e-18 95.5 132 42.4
HanXRQChr07g0197461 Helianthus annuus HOM05D004114 ORTHO05D004667 4.2e-18 95.1 132 40.9
BcaB07g33582 Brassica carinata HOM05D004114 ORTHO05D004667 5.4e-18 94.7 132 42.4
Peaxi162Scf00004g00237 Petunia axillaris HOM05D004114 ORTHO05D004667 5.4e-18 94.7 132 43.2
Sc16g0011490 Simmondsia chinensis HOM05D004114 ORTHO05D004667 5.4e-18 94.7 132 43.2
ECA238G2774 Erigeron canadensis HOM05D004114 ORTHO05D004667 7.1e-18 94.4 132 43.9
AL1G59170 Arabidopsis lyrata HOM05D004114 ORTHO05D004667 9.2e-18 94.0 132 42.4
Carub.0001s4022 Capsella rubella HOM05D004114 ORTHO05D004667 9.2e-18 94.0 132 42.4
BcaC08g43302 Brassica carinata HOM05D004114 ORTHO05D004667 1.6e-17 93.2 132 41.7
C06p06490 Brassica napus HOM05D004114 ORTHO05D004667 1.6e-17 93.2 132 41.7
BolC6t35762H Brassica oleracea HOM05D004114 ORTHO05D004667 1.6e-17 93.2 132 41.7
Sp1g38010 Schrenkiella parvula HOM05D004114 ORTHO05D004667 1.6e-17 93.2 132 42.4
Migut.D00601 Erythranthe guttata HOM05D004114 ORTHO05D004667 2.1e-17 92.8 132 43.9
Nn7g36204 Nelumbo nucifera HOM05D004114 ORTHO05D004667 2.1e-17 92.8 132 44.7
Nitab4.5_0002741g0170 Nicotiana tabacum HOM05D004114 ORTHO05D004667 2.1e-17 92.8 132 40.9
Ah.06g194200 Amaranthus hybridus HOM05D004114 ORTHO05D004667 2.7e-17 92.4 132 40.2
SEGI_01130 Sequoiadendron giganteum HOM05D004114 ORTHO05D004667 2.7e-17 92.4 132 44.7
Solyc11g065750.2 Solanum lycopersicum HOM05D004114 ORTHO05D004667 2.7e-17 92.4 132 43.2
unitig_699.g19135 Utricularia gibba HOM05D004114 ORTHO05D004667 2.7e-17 92.4 132 39.4
A06p02560 Brassica napus HOM05D004114 ORTHO05D004667 3.5e-17 92.0 132 40.9
BraA06t23464Z Brassica rapa HOM05D004114 ORTHO05D004667 3.5e-17 92.0 132 40.9
CAN.G599.3 Capsicum annuum HOM05D004114 ORTHO05D004667 3.5e-17 92.0 132 41.7
Sopen11g025510 Solanum pennellii HOM05D004114 ORTHO05D004667 4.6e-17 91.7 132 43.2
Manes.06G164400 Manihot esculenta HOM05D004114 ORTHO05D004667 6.0e-17 91.3 132 43.9
SalBow6G3263 Salvia bowleyana HOM05D004114 ORTHO05D004667 6.0e-17 91.3 132 40.2
Thhalv10011291m.g Eutrema salsugineum HOM05D004114 ORTHO05D004667 1.7e-16 89.7 83 55.4
Oeu063322.2 Olea europaea HOM05D004114 ORTHO05D004667 3.0e-16 89.0 131 40.5
Aa31LG10G3520 Aethionema arabicum HOM05D004114 ORTHO05D004667 6.6e-16 87.8 132 39.4
CDE05G0618 Ceratophyllum demersum HOM05D004114 ORTHO05D004667 6.6e-16 87.8 122 41.8
CARHR041420 Cardamine hirsuta HOM05D004114 ORTHO05D004667 2.5e-15 85.9 132 39.4
SMO347G0278 Selaginella moellendorffii HOM05D004114 ORTHO05D004667 2.5e-15 85.9 121 43.8
CSS0035176 Camellia sinensis var. sinensis HOM05D004114 ORTHO05D004667 2.1e-14 82.8 101 49.5
AUR62019301 Chenopodium quinoa HOM05D004114 ORTHO05D004667 3.6e-14 82.0 132 37.9
AUR62000120 Chenopodium quinoa HOM05D004114 ORTHO05D004667 4.8e-14 81.6 132 37.9
Cc00_g05950 Coffea canephora HOM05D004114 ORTHO05D004667 4.8e-14 81.6 132 40.9
Zm00001eb115370 Zea mays HOM05D004114 ORTHO05D004667 8.1e-14 80.9 83 55.4
CDE05G0406 Ceratophyllum demersum HOM05D004114 ORTHO05D004667 2.4e-13 79.3 122 39.3
Lsat_1_v5_gn_2_97760 Lactuca sativa HOM05D004114 ORTHO05D004667 4.0e-13 78.6 132 40.2
Zm00001eb166150 Zea mays HOM05D004114 ORTHO05D004667 5.3e-13 78.2 83 51.8
EL10Ac4g10249 Beta vulgaris HOM05D004114 ORTHO05D004667 4.4e-12 75.1 101 43.6
Pp3c15_7590 Physcomitrium patens HOM05D004114 ORTHO05D004667 5.8e-12 74.7 133 37.6
BraA08t32330Z Brassica rapa HOM05D004114 ORTHO05D004667 1.3e-11 73.6 118 39.8
BcaC01g01258 Brassica carinata HOM05D004114 ORTHO05D004667 4.9e-11 71.6 55 60.0
BolC3t21309H Brassica oleracea HOM05D004114 ORTHO05D004667 4.9e-11 71.6 55 60.0
Pp3c9_10010 Physcomitrium patens HOM05D004114 ORTHO05D004667 4.9e-11 71.6 134 35.8
Os11g0638900 Oryza sativa ssp. japonica HOM05D004114 ORTHO05D004667 2.4e-10 69.3 66 54.5
Mapoly0179s0020 Marchantia polymorpha HOM05D004114 ORTHO05D004667 3.2e-10 68.9 134 35.1
HPP92_020382 Vanilla planifolia HOM05D004114 ORTHO05D004667 5.4e-10 68.2 83 48.2
EL10Ac3g06409 Beta vulgaris HOM05D004114 ORTHO05D004667 5.1e-08 61.6 57 47.4
FAN23G1093 Fragaria x ananassa HOM05D004114 ORTHO05D200335 5.6e-07 58.2 39 69.2
Psat3g081480 Pisum sativum HOM05D003675 ORTHO05D004318 1.3e-06 57.0 87 42.5
Dinv18208 Davidia involucrata HOM05D000103 ORTHO05D000049 2.8e-06 55.8 53 56.6
AagrBONN_evm.TU.Sc2ySwM_340.1837 Anthoceros agrestis HOM05D004114 ORTHO05D004667 6.2e-06 54.7 132 31.1


User provided reference genes

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