Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN06G1012 Fragaria x ananassa HOM05D003297 ORTHO05D004027 3.8e-108 394.8 195 100.0
FAN06G2104 Fragaria x ananassa HOM05D003297 ORTHO05D004027 1.6e-82 309.7 219 77.6
FAN10G0806 Fragaria x ananassa HOM05D003297 ORTHO05D004027 4.6e-61 238.4 206 65.5
FAN01G2972 Fragaria x ananassa HOM05D003297 ORTHO05D004027 2.8e-42 176.0 245 49.4
RcHm_v2.0_Chr3g0477241 Rosa chinensis HOM05D003297 ORTHO05D004027 1.5e-40 170.2 235 50.2
Prupe.6G027300 Prunus persica HOM05D003297 ORTHO05D004027 3.9e-36 155.6 231 47.6
MD09G1015300 Malus domestica HOM05D003297 ORTHO05D004027 4.3e-35 152.1 229 47.6
Cfa007254 Carpinus fangiana HOM05D003297 ORTHO05D004027 5.6e-35 151.8 231 45.9
Prupe.3G302500 Prunus persica HOM05D003297 ORTHO05D004027 7.3e-35 151.4 229 45.9
MD17G1015400 Malus domestica HOM05D003297 ORTHO05D004027 9.6e-35 151.0 229 47.2
Haze_14833 Corylus avellana HOM05D003297 ORTHO05D004027 1.6e-34 150.2 231 45.5
Dinv25678 Davidia involucrata HOM05D003297 ORTHO05D004027 2.1e-34 149.8 232 46.6
Lj7A608T45 Lonicera japonica HOM05D003297 ORTHO05D004027 8.1e-34 147.9 231 46.3
Aqoxy3G01473 Aquilegia oxysepala HOM05D003297 ORTHO05D004027 1.1e-33 147.5 230 45.7
HanXRQChr17g0550191 Helianthus annuus HOM05D003297 ORTHO05D004027 4.0e-33 145.6 229 46.7
Lsat_1_v5_gn_0_14320 Lactuca sativa HOM05D003297 ORTHO05D004027 6.9e-33 144.8 229 46.3
PGR083G1628 Punica granatum HOM05D003297 ORTHO05D004027 9.0e-33 144.4 231 46.3
QL02p072446 Quercus lobata HOM05D003297 ORTHO05D004027 2.0e-32 143.3 231 45.0
CiPaw.03G052300 Carya illinoinensis HOM05D003297 ORTHO05D004027 2.6e-32 142.9 232 44.8
Duzib147G0281 Durio zibethinus HOM05D003297 ORTHO05D004027 4.4e-32 142.1 195 48.2
DCAR_021763 Daucus carota HOM05D003297 ORTHO05D004027 7.6e-32 141.4 231 43.3
Medtr2g034610 Medicago truncatula HOM05D003297 ORTHO05D004027 9.9e-32 141.0 228 45.2
Atru.chr6.2513 Acer truncatum HOM05D003297 ORTHO05D004027 1.7e-31 140.2 231 44.2
Sed0027775 Sechium edule HOM05D003297 ORTHO05D004027 1.7e-31 140.2 233 43.8
Manes.17G106000 Manihot esculenta HOM05D003297 ORTHO05D004027 2.9e-31 139.4 229 42.8
Solyc10g078830.2 Solanum lycopersicum HOM05D003297 ORTHO05D004027 3.8e-31 139.0 229 44.1
Sopen10g029470 Solanum pennellii HOM05D003297 ORTHO05D004027 3.8e-31 139.0 229 44.1
PGSC0003DMG400011416 Solanum tuberosum HOM05D003297 ORTHO05D004027 3.8e-31 139.0 229 44.1
GSVIVG01001822001 Vitis vinifera HOM05D003297 ORTHO05D004027 3.8e-31 139.0 232 46.6
CSS0009984 Camellia sinensis var. sinensis HOM05D003297 ORTHO05D004027 4.9e-31 138.7 232 45.3
arahy.Tifrunner.gnm1.ann1.G51SBL Arachis hypogaea HOM05D003297 ORTHO05D004027 6.4e-31 138.3 228 43.9
Hma1.2p1_0172F.1_g076190 Hydrangea macrophylla HOM05D003297 ORTHO05D004027 8.4e-31 137.9 231 44.6
vmacro05937 Vaccinium macrocarpon HOM05D003297 ORTHO05D004027 8.4e-31 137.9 243 42.8
ECA246G0154 Erigeron canadensis HOM05D003297 ORTHO05D004027 1.1e-30 137.5 229 45.0
Nn3g16636 Nelumbo nucifera HOM05D003297 ORTHO05D004027 1.1e-30 137.5 223 43.5
THA.LOC104822413 Tarenaya hassleriana HOM05D003297 ORTHO05D004027 1.4e-30 137.1 232 44.8
Lsat_1_v5_gn_2_94421 Lactuca sativa HOM05D003297 ORTHO05D004027 1.9e-30 136.7 229 46.3
CSS0027121 Camellia sinensis var. sinensis HOM05D003297 ORTHO05D004027 2.4e-30 136.3 231 44.6
CSS0005089 Camellia sinensis var. sinensis HOM05D003297 ORTHO05D004027 3.2e-30 136.0 233 44.6
Lj1g0013881 Lotus japonicus HOM05D003297 ORTHO05D004027 3.2e-30 136.0 227 42.3
Lalb_Chr06g0174311 Lupinus albus HOM05D003297 ORTHO05D004027 3.2e-30 136.0 227 42.7
PSO541G1060 Papaver somniferum HOM05D003297 ORTHO05D004027 3.2e-30 136.0 230 42.6
TWI36G1507 Tripterygium wilfordii HOM05D003297 ORTHO05D004027 3.2e-30 136.0 229 41.0
TAR371G0644 Trochodendron aralioides HOM05D003297 ORTHO05D004027 3.2e-30 136.0 232 44.8
Actinidia38211 Actinidia chinensis HOM05D003297 ORTHO05D004027 4.2e-30 135.6 231 43.7
PSO675G2052 Papaver somniferum HOM05D003297 ORTHO05D004027 4.2e-30 135.6 229 41.9
Psat1g161760 Pisum sativum HOM05D003297 ORTHO05D004027 4.2e-30 135.6 227 43.6
Nitab4.5_0004643g0030 Nicotiana tabacum HOM05D003297 ORTHO05D004027 9.3e-30 134.4 229 44.5
arahy.Tifrunner.gnm1.ann1.5QR84K Arachis hypogaea HOM05D003297 ORTHO05D004027 1.2e-29 134.0 228 43.4
ClCG08G000860 Citrullus lanatus HOM05D003297 ORTHO05D004027 1.2e-29 134.0 235 43.8
Ciclev10016373m.g Citrus clementina HOM05D003297 ORTHO05D004027 1.2e-29 134.0 231 43.3
PSO478G3807 Papaver somniferum HOM05D003297 ORTHO05D004027 1.2e-29 134.0 229 41.0
Cc05_g01780 Coffea canephora HOM05D003297 ORTHO05D004027 2.1e-29 133.3 229 43.7
Cc05_g01790 Coffea canephora HOM05D003297 ORTHO05D004027 2.1e-29 133.3 229 43.7
Duzib264G0931 Durio zibethinus HOM05D003297 ORTHO05D004027 2.1e-29 133.3 230 44.3
Peaxi162Scf00304g00127 Petunia axillaris HOM05D003297 ORTHO05D004027 2.1e-29 133.3 232 41.8
Gohir.D04G078900 Gossypium hirsutum HOM05D003297 ORTHO05D004027 2.7e-29 132.9 230 43.9
Gorai.012G088800 Gossypium raimondii HOM05D003297 ORTHO05D004027 6.0e-29 131.7 230 43.9
Gorai.006G040100 Gossypium raimondii HOM05D003297 ORTHO05D004027 1.0e-28 131.0 230 43.0
Lj4g0023257 Lotus japonicus HOM05D003297 ORTHO05D004027 1.0e-28 131.0 227 41.9
Nn1g00668 Nelumbo nucifera HOM05D003297 ORTHO05D004027 1.0e-28 131.0 239 42.7
PSO541G1735 Papaver somniferum HOM05D003297 ORTHO05D004027 1.3e-28 130.6 230 38.7
Sabra16G0215200 Salix brachista HOM05D003297 ORTHO05D004027 1.3e-28 130.6 232 43.1
CARHR199100 Cardamine hirsuta HOM05D003297 ORTHO05D004027 2.3e-28 129.8 233 41.6
Gohir.A05G340500 Gossypium hirsutum HOM05D003297 ORTHO05D004027 2.3e-28 129.8 231 45.0
Sc03g0006810 Simmondsia chinensis HOM05D003297 ORTHO05D004027 3.0e-28 129.4 230 43.0
COL.COLO4_08765 Corchorus olitorius HOM05D003297 ORTHO05D004027 3.9e-28 129.0 229 41.0
CANSAT64G0772 Cannabis sativa HOM05D003297 ORTHO05D004027 5.1e-28 128.6 234 40.6
CsaV3_3G044040 Cucumis sativus L. HOM05D003297 ORTHO05D004027 5.1e-28 128.6 230 41.7
MBI15_g24202_MAGBIO Magnolia biondii HOM05D003297 ORTHO05D004027 5.1e-28 128.6 232 40.9
unitig_0.g1941 Utricularia gibba HOM05D003297 ORTHO05D004027 6.6e-28 128.3 233 40.3
MELO3C022190.2 Cucumis melo HOM05D003297 ORTHO05D004027 8.7e-28 127.9 249 40.6
CDE04G3082 Ceratophyllum demersum HOM05D003297 ORTHO05D004027 1.1e-27 127.5 226 41.2
TPR.G5775 Trifolium pratense HOM05D003297 ORTHO05D004027 1.5e-27 127.1 227 43.2
Thhalv10014458m.g Eutrema salsugineum HOM05D003297 ORTHO05D004027 1.9e-27 126.7 236 40.3
AUR62001824 Chenopodium quinoa HOM05D003297 ORTHO05D004027 3.3e-27 125.9 230 42.6
C09p62920 Brassica napus HOM05D003297 ORTHO05D004027 4.3e-27 125.6 236 40.3
BolC9t59129H Brassica oleracea HOM05D003297 ORTHO05D004027 4.3e-27 125.6 236 40.3
Nitab4.5_0003600g0020 Nicotiana tabacum HOM05D003297 ORTHO05D004027 4.3e-27 125.6 229 41.0
MSTRG.3093 Avicennia marina HOM05D003297 ORTHO05D004027 7.3e-27 124.8 227 41.4
BcaC04g19050 Brassica carinata HOM05D003297 ORTHO05D004027 9.6e-27 124.4 236 40.3
Peaxi162Scf00003g04521 Petunia axillaris HOM05D003297 ORTHO05D004027 9.6e-27 124.4 232 40.1
Cpa.g.sc130.8 Carica papaya HOM05D003297 ORTHO05D004027 1.6e-26 123.6 230 44.3
arahy.Tifrunner.gnm1.ann1.IZLP0D Arachis hypogaea HOM05D003297 ORTHO05D004027 2.8e-26 122.9 228 41.7
Sp6g29790 Schrenkiella parvula HOM05D003297 ORTHO05D004027 3.6e-26 122.5 236 40.3
A10p24230 Brassica napus HOM05D003297 ORTHO05D004027 4.8e-26 122.1 236 39.8
BraA10t44488Z Brassica rapa HOM05D003297 ORTHO05D004027 4.8e-26 122.1 236 39.8
Glyma.19G075600 Glycine max HOM05D003297 ORTHO05D004027 6.2e-26 121.7 227 40.5
Gohir.A09G034300 Gossypium hirsutum HOM05D003297 ORTHO05D004027 6.2e-26 121.7 218 41.3
Phvul.010G007000 Phaseolus vulgaris HOM05D003297 ORTHO05D004027 6.2e-26 121.7 227 41.0
Rhsim10G0008800 Rhododendron simsii HOM05D003297 ORTHO05D004027 1.1e-25 120.9 229 41.0
A03p06500 Brassica napus HOM05D003297 ORTHO05D004027 1.4e-25 120.6 233 40.3
Eucgr.J02308 Eucalyptus grandis HOM05D003297 ORTHO05D004027 1.4e-25 120.6 231 42.0
BraA03t09982Z Brassica rapa HOM05D003297 ORTHO05D004027 1.8e-25 120.2 233 40.3
Carub.0006s1244 Capsella rubella HOM05D003297 ORTHO05D004027 1.8e-25 120.2 236 39.0
BcaB08g36969 Brassica carinata HOM05D003297 ORTHO05D004027 2.4e-25 119.8 236 39.4
Thecc.04G030000 Theobroma cacao HOM05D003297 ORTHO05D004027 2.4e-25 119.8 231 42.9
BcaB01g06337 Brassica carinata HOM05D003297 ORTHO05D004027 3.1e-25 119.4 236 39.4
C03p07500 Brassica napus HOM05D003297 ORTHO05D004027 3.1e-25 119.4 233 40.3
Glyma.12G242000 Glycine max HOM05D003297 ORTHO05D004027 3.1e-25 119.4 228 40.8
AL6G24920 Arabidopsis lyrata HOM05D003297 ORTHO05D004027 4.0e-25 119.0 233 40.3
BcaB01g05299 Brassica carinata HOM05D003297 ORTHO05D004027 4.0e-25 119.0 233 40.3
AUR62009611 Chenopodium quinoa HOM05D003297 ORTHO05D004027 4.0e-25 119.0 231 40.3
Gohir.D09G035200 Gossypium hirsutum HOM05D003297 ORTHO05D004027 5.3e-25 118.6 230 41.3
Aa31LG11G15030 Aethionema arabicum HOM05D003297 ORTHO05D004027 9.0e-25 117.9 233 39.9
AT5G14240 Arabidopsis thaliana HOM05D003297 ORTHO05D004027 9.0e-25 117.9 233 39.9
Rhsim06G0126200 Rhododendron simsii HOM05D003297 ORTHO05D004027 1.5e-24 117.1 230 41.3
Oeu058767.1 Olea europaea HOM05D003297 ORTHO05D004027 2.0e-24 116.7 248 37.5
Potri.001G334100 Populus trichocarpa HOM05D003297 ORTHO05D004027 2.0e-24 116.7 205 41.5
Nitab4.5_0000105g0150 Nicotiana tabacum HOM05D003297 ORTHO05D004027 3.4e-24 115.9 232 40.5
RcHm_v2.0_Chr3g0477231 Rosa chinensis HOM05D003297 ORTHO05D004027 1.3e-23 114.0 159 50.3
Migut.H00013 Erythranthe guttata HOM05D003297 ORTHO05D004027 6.4e-23 111.7 227 37.9
Os01g0184800 Oryza sativa ssp. japonica HOM05D003297 ORTHO05D004027 6.4e-23 111.7 228 36.8
ATR1136G208 Amborella trichopoda HOM05D003297 ORTHO05D004027 8.4e-23 111.3 236 39.0
FvH4_6g20890 Fragaria vesca HOM05D003297 ORTHO05D004027 1.1e-22 110.9 110 60.0
FAN05G2878 Fragaria x ananassa HOM05D003297 ORTHO05D004027 1.1e-22 110.9 110 60.0
Migut.D01746 Erythranthe guttata HOM05D003297 ORTHO05D004027 1.4e-22 110.5 228 39.5
Hund04990 Selenicereus undatus HOM05D003297 ORTHO05D004027 1.4e-22 110.5 229 39.3
CARHR103230 Cardamine hirsuta HOM05D003297 ORTHO05D004027 1.9e-22 110.2 216 39.8
EL10Ac9g22681 Beta vulgaris HOM05D003297 ORTHO05D004027 2.4e-22 109.8 195 41.5
HanXRQChr15g0474721 Helianthus annuus HOM05D003297 ORTHO05D004027 4.2e-22 109.0 229 41.5
Phvul.004G055600 Phaseolus vulgaris HOM05D003297 ORTHO05D004027 4.2e-22 109.0 223 39.0
Ah.16g107000 Amaranthus hybridus HOM05D003297 ORTHO05D004027 7.1e-22 108.2 264 34.5
BolC3t13251H Brassica oleracea HOM05D003297 ORTHO05D004027 9.3e-22 107.8 233 38.6
FAN14G3337 Fragaria x ananassa HOM05D003297 ORTHO05D004027 9.3e-22 107.8 111 57.7
Lsat_1_v5_gn_2_17820 Lactuca sativa HOM05D003297 ORTHO05D004027 1.6e-21 107.1 162 48.1
FAN05G2899 Fragaria x ananassa HOM05D003297 ORTHO05D004027 3.5e-21 105.9 413 30.0
SGA_v2.0_scaffold18G08223 Striga asiatica HOM05D003297 ORTHO05D004027 7.9e-21 104.8 223 36.8
SEGI_15348 Sequoiadendron giganteum HOM05D003297 ORTHO05D004027 1.3e-20 104.0 231 40.3
Hund18929 Selenicereus undatus HOM05D003297 ORTHO05D004027 3.9e-20 102.4 210 38.6
HPP92_005181 Vanilla planifolia HOM05D003297 ORTHO05D004027 1.1e-19 100.9 229 38.4
C02p06630 Brassica napus HOM05D003297 ORTHO05D004027 1.5e-19 100.5 225 36.4
FAN03G2227 Fragaria x ananassa HOM05D003297 ORTHO05D004027 9.6e-19 97.8 108 53.7
FAN14G1208 Fragaria x ananassa HOM05D003297 ORTHO05D004027 2.8e-18 96.3 58 87.9
TAR376G0821 Trochodendron aralioides HOM05D003297 ORTHO05D004027 2.8e-18 96.3 111 55.0
arahy.Tifrunner.gnm1.ann1.PXFG7S Arachis hypogaea HOM05D003297 ORTHO05D004027 1.1e-17 94.4 153 45.8
HanXRQChr17g0550181 Helianthus annuus HOM05D003297 ORTHO05D004027 2.4e-17 93.2 193 41.5
HanXRQChr17g0534591 Helianthus annuus HOM05D003297 ORTHO05D004027 6.9e-17 91.7 110 50.9
AagrBONN_evm.TU.Sc2ySwM_368.1649 Anthoceros agrestis HOM05D003297 ORTHO05D004027 9.0e-17 91.3 231 36.4
CAN.G1161.37 Capsicum annuum HOM05D003297 ORTHO05D004027 2.6e-16 89.7 108 50.9
HanXRQChr17g0534631 Helianthus annuus HOM05D003297 ORTHO05D004027 5.8e-16 88.6 110 50.0
SMO147G0291 Selaginella moellendorffii HOM05D003297 ORTHO05D004027 1.7e-15 87.0 222 37.8
HanXRQChr15g0474981 Helianthus annuus HOM05D003297 ORTHO05D004027 2.2e-15 86.7 112 51.8
Mapoly0059s0038 Marchantia polymorpha HOM05D003297 ORTHO05D004027 2.2e-15 86.7 229 36.7
Peaxi162Scf00480g00212 Petunia axillaris HOM05D003297 ORTHO05D004027 4.9e-15 85.5 108 48.1
PSO017G7282 Papaver somniferum HOM05D003297 ORTHO05D004027 8.4e-15 84.7 108 45.4
SGA_v2.0_scaffold481G52325 Striga asiatica HOM05D003297 ORTHO05D004027 5.5e-14 82.0 119 47.1
CDE07G0254 Ceratophyllum demersum HOM05D003297 ORTHO05D004027 9.3e-14 81.3 105 45.7
Cc00_g35860 Coffea canephora HOM05D003297 ORTHO05D004027 2.1e-13 80.1 71 59.2
CDE07G1941 Ceratophyllum demersum HOM05D003297 ORTHO05D004027 6.0e-13 78.6 57 71.9
Potri.017G066200 Populus trichocarpa HOM05D003297 ORTHO05D004027 7.9e-13 78.2 225 33.3
Nn1g00078 Nelumbo nucifera HOM05D003297 ORTHO05D004027 3.9e-12 75.9 85 52.9
Aqoxy6G01653 Aquilegia oxysepala HOM05D003297 ORTHO05D004027 1.9e-11 73.6 88 51.1
CSS0020533 Camellia sinensis var. sinensis HOM05D003297 ORTHO05D004027 1.9e-11 73.6 127 42.5
HanXRQChr17g0534581 Helianthus annuus HOM05D003297 ORTHO05D004027 2.5e-11 73.2 52 73.1
HanXRQChr17g0534611 Helianthus annuus HOM05D003297 ORTHO05D004027 2.5e-11 73.2 96 47.9
Pp3c2_20640 Physcomitrium patens HOM05D003297 ORTHO05D004027 9.6e-11 71.2 229 34.1
EL10Ac8g19289 Beta vulgaris HOM05D003297 ORTHO05D004027 2.8e-10 69.7 111 42.3
Lsat_1_v5_gn_3_133181 Lactuca sativa HOM05D003297 ORTHO05D004027 2.8e-10 69.7 55 67.3
FAN10G1829 Fragaria x ananassa HOM05D003297 ORTHO05D004027 1.1e-09 67.8 89 48.3
Lsat_1_v5_gn_4_70420 Lactuca sativa HOM05D003297 ORTHO05D020826 2.4e-09 66.6 67 62.7
Sabra17G0062400 Salix brachista HOM05D003297 ORTHO05D004027 3.1e-09 66.2 82 48.8
Actinidia30893 Actinidia chinensis HOM05D003297 ORTHO05D004027 4.5e-08 62.4 56 62.5
Lsat_1_v5_gn_8_50200 Lactuca sativa HOM05D003846 ORTHO05D004726 5.8e-08 62.0 80 51.2
RcHm_v2.0_Chr1g0359651 Rosa chinensis HOM05D003297 ORTHO05D004027 1.0e-07 61.2 32 90.6
Lsat_1_v5_gn_4_123441 Lactuca sativa HOM05D003846 ORTHO05D004726 1.7e-07 60.5 66 62.1
Lsat_1_v5_gn_5_125381 Lactuca sativa HOM05D003846 ORTHO05D020826 1.7e-07 60.5 66 62.1
Lsat_1_v5_gn_5_18841 Lactuca sativa HOM05D003846 ORTHO05D020826 1.7e-07 60.5 66 62.1
Lsat_1_v5_gn_5_43841 Lactuca sativa HOM05D003846 ORTHO05D020826 1.7e-07 60.5 66 62.1
CSS0031371 Camellia sinensis var. sinensis HOM05D003297 ORTHO05D004027 2.2e-07 60.1 217 33.6
Lsat_1_v5_gn_2_58240 Lactuca sativa HOM05D003297 ORTHO05D020826 2.9e-07 59.7 66 62.1
Lsat_1_v5_gn_7_114520 Lactuca sativa HOM05D003846 ORTHO05D004726 6.5e-07 58.5 66 60.6
Zm00001eb121870 Zea mays HOM05D003297 ORTHO05D004027 1.1e-06 57.8 55 52.7
Cre06.g291900 Chlamydomonas reinhardtii HOM05D003297 ORTHO05D004027 1.9e-06 57.0 153 32.7
Lsat_1_v5_gn_4_110841 Lactuca sativa HOM05D003297 ORTHO05D004027 4.2e-06 55.8 73 49.3
SGA_v2.0_scaffold857G53675 Striga asiatica HOM05D003297 ORTHO05D004027 7.1e-06 55.1 44 63.6
Zm00001eb269870 Zea mays HOM05D003297 ORTHO05D004027 7.1e-06 55.1 55 52.7


User provided reference genes

Program Settings