Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FvH4_7g24710 Fragaria vesca HOM05D007292 ORTHO05D009084 3.6e-130 468.4 260 100.0
FAN06G1000 Fragaria x ananassa HOM05D007292 ORTHO05D009084 3.6e-130 468.4 260 100.0
FAN10G1098 Fragaria x ananassa HOM05D007292 ORTHO05D009084 3.1e-129 465.3 260 98.8
FAN01G0766 Fragaria x ananassa HOM05D007292 ORTHO05D009084 1.2e-125 453.4 260 93.8
FAN03G0495 Fragaria x ananassa HOM05D004762 ORTHO05D005972 1.2e-120 436.8 246 99.2
RcHm_v2.0_Chr1g0370551 Rosa chinensis HOM05D007292 ORTHO05D009084 5.1e-108 394.8 261 87.7
Prupe.2G252500 Prunus persica HOM05D007292 ORTHO05D009084 2.1e-93 346.3 261 73.2
MD01G1154900 Malus domestica HOM05D007292 ORTHO05D009084 2.3e-76 289.7 251 67.7
GSVIVG01032790001 Vitis vinifera HOM05D007292 ORTHO05D009084 9.1e-65 251.1 258 59.7
TAR633G2478 Trochodendron aralioides HOM05D007292 ORTHO05D009084 1.4e-62 243.8 262 58.4
CiPaw.01G300300 Carya illinoinensis HOM05D007292 ORTHO05D009084 1.6e-61 240.4 258 56.6
MD07G1224000 Malus domestica HOM05D007292 ORTHO05D009084 8.8e-60 234.6 263 56.3
Thecc.10G013900 Theobroma cacao HOM05D007292 ORTHO05D009084 4.4e-59 232.3 259 55.2
QL08p063404 Quercus lobata HOM05D007292 ORTHO05D009084 1.7e-58 230.3 258 54.7
Dinv10605 Davidia involucrata HOM05D007292 ORTHO05D009084 2.2e-58 229.9 258 55.8
Haze_17244 Corylus avellana HOM05D004762 ORTHO05D005972 6.3e-58 228.4 244 56.6
Cfa001300 Carpinus fangiana HOM05D007292 ORTHO05D009084 2.4e-57 226.5 242 56.6
TWI09G0172 Tripterygium wilfordii HOM05D007292 ORTHO05D009084 9.1e-57 224.6 259 53.3
Ciclev10032544m.g Citrus clementina HOM05D007292 ORTHO05D009084 2.0e-56 223.4 260 56.5
Manes.07G131600 Manihot esculenta HOM05D007292 ORTHO05D009084 3.8e-55 219.2 259 54.4
Cpa.g.sc19.157 Carica papaya HOM05D007292 ORTHO05D009084 1.2e-53 214.2 259 53.3
Duzib114G0074 Durio zibethinus HOM05D007292 ORTHO05D009084 7.9e-53 211.5 258 52.7
Atru.chr12.94 Acer truncatum HOM05D007292 ORTHO05D009084 2.3e-52 209.9 266 54.9
PGSC0003DMG400027726 Solanum tuberosum HOM05D007292 ORTHO05D009084 3.3e-51 206.1 259 53.3
TWI53G0916 Tripterygium wilfordii HOM05D007292 ORTHO05D009084 1.4e-49 200.7 259 49.0
Sopen03g026090 Solanum pennellii HOM05D007292 ORTHO05D009084 4.1e-49 199.1 259 52.5
MELO3C018364.2 Cucumis melo HOM05D007292 ORTHO05D009084 5.3e-49 198.7 263 54.0
CsaV3_5G010290 Cucumis sativus L. HOM05D007292 ORTHO05D009084 7.0e-49 198.4 263 54.4
Lalb_Chr08g0231651 Lupinus albus HOM05D007292 ORTHO05D009084 3.5e-48 196.1 255 50.2
Potri.010G186800 Populus trichocarpa HOM05D007292 ORTHO05D009084 7.7e-48 194.9 259 49.8
arahy.Tifrunner.gnm1.ann1.RI3S0A Arachis hypogaea HOM05D007292 ORTHO05D009084 1.7e-47 193.7 262 50.8
Actinidia00958 Actinidia chinensis HOM05D007292 ORTHO05D009084 1.1e-46 191.0 261 50.6
arahy.Tifrunner.gnm1.ann1.W7USAB Arachis hypogaea HOM05D007292 ORTHO05D009084 1.1e-46 191.0 262 50.8
Glyma.18G025900 Glycine max HOM05D007292 ORTHO05D009084 1.1e-46 191.0 262 48.9
vmacro10031 Vaccinium macrocarpon HOM05D007292 ORTHO05D009084 1.9e-46 190.3 260 50.8
CSS0010989 Camellia sinensis var. sinensis HOM05D007292 ORTHO05D009084 3.2e-46 189.5 260 50.4
Potri.008G070700 Populus trichocarpa HOM05D007292 ORTHO05D009084 5.5e-46 188.7 259 48.6
Gohir.A05G330800 Gossypium hirsutum HOM05D007292 ORTHO05D009084 2.7e-45 186.4 259 49.8
CANSAT56G1912 Cannabis sativa HOM05D007292 ORTHO05D009084 4.7e-45 185.7 262 48.9
Sed0024586 Sechium edule HOM05D007292 ORTHO05D009084 4.7e-45 185.7 263 49.8
Glyma.11G231200 Glycine max HOM05D007292 ORTHO05D009084 8.0e-45 184.9 263 48.7
Lj6g0005846 Lotus japonicus HOM05D007292 ORTHO05D009084 8.0e-45 184.9 259 47.5
Nitab4.5_0002701g0020 Nicotiana tabacum HOM05D007292 ORTHO05D009084 1.4e-44 184.1 258 49.2
Gorai.012G078000 Gossypium raimondii HOM05D007292 ORTHO05D009084 2.3e-44 183.3 260 50.0
TAR636G1797 Trochodendron aralioides HOM05D007292 ORTHO05D009084 4.0e-44 182.6 260 50.4
Gohir.D04G069400 Gossypium hirsutum HOM05D007292 ORTHO05D009084 6.7e-44 181.8 259 49.4
Solyc03g095990.1 Solanum lycopersicum HOM05D007292 ORTHO05D009084 6.7e-44 181.8 215 54.4
PSO384G0417 Papaver somniferum HOM05D007292 ORTHO05D009084 8.8e-44 181.4 263 48.3
Nitab4.5_0000487g0050 Nicotiana tabacum HOM05D007292 ORTHO05D009084 2.6e-43 179.9 238 50.0
ClCG07G004350 Citrullus lanatus HOM05D007292 ORTHO05D009084 3.3e-43 179.5 251 50.2
Rhsim09G0178500 Rhododendron simsii HOM05D007292 ORTHO05D009084 3.3e-43 179.5 251 50.6
Phvul.001G244400 Phaseolus vulgaris HOM05D007292 ORTHO05D009084 4.4e-43 179.1 261 45.6
Medtr3g070960 Medicago truncatula HOM05D007292 ORTHO05D009084 3.1e-41 172.9 262 46.2
PGR044G1044 Punica granatum HOM05D007292 ORTHO05D009084 3.1e-41 172.9 264 47.3
VMungo1383G3483 Vigna mungo HOM05D001399 ORTHO05D001670 4.1e-41 172.6 261 44.8
TPR.G11203 Trifolium pratense HOM05D007292 ORTHO05D009084 1.6e-40 170.6 264 45.5
AUR62022909 Chenopodium quinoa HOM05D007292 ORTHO05D009084 2.7e-40 169.9 237 47.7
Peaxi162Scf00484g00003 Petunia axillaris HOM05D007292 ORTHO05D009084 5.9e-40 168.7 210 52.4
EL10Ac2g04856 Beta vulgaris HOM05D007292 ORTHO05D009084 7.7e-40 168.3 236 49.6
Actinidia13950 Actinidia chinensis HOM05D007292 ORTHO05D009084 1.7e-39 167.2 258 47.7
Psat5g129440 Pisum sativum HOM05D007292 ORTHO05D009084 5.0e-39 165.6 266 44.0
Ah.16g103670 Amaranthus hybridus HOM05D007292 ORTHO05D009084 8.5e-39 164.9 259 45.9
Hund13879 Selenicereus undatus HOM05D007292 ORTHO05D009084 1.1e-38 164.5 121 71.9
Eucgr.J00191 Eucalyptus grandis HOM05D007292 ORTHO05D009084 1.9e-38 163.7 263 44.9
Ca_15135_v3 Cicer arietinum L. HOM05D007292 ORTHO05D009084 7.2e-38 161.8 259 43.2
Aqoxy6G01833 Aquilegia oxysepala HOM05D007292 ORTHO05D009084 8.0e-37 158.3 259 44.4
Sabra08G0052000 Salix brachista HOM05D007292 ORTHO05D009084 1.8e-36 157.1 221 48.0
ATR0681G254 Amborella trichopoda HOM05D007292 ORTHO05D009084 5.2e-36 155.6 215 47.0
Cc08_g07220 Coffea canephora HOM05D007292 ORTHO05D009084 1.2e-35 154.5 201 50.7
Lsat_1_v5_gn_2_124081 Lactuca sativa HOM05D007292 ORTHO05D009084 4.4e-35 152.5 264 46.2
Hma1.2p1_0145F.1_g065370 Hydrangea macrophylla HOM05D007292 ORTHO05D009084 2.2e-34 150.2 107 77.6
Hma1.2p1_2705F.1_g327175 Hydrangea macrophylla HOM05D007292 ORTHO05D009084 2.2e-34 150.2 107 77.6
SalBow5G4600 Salvia bowleyana HOM05D007292 ORTHO05D009084 3.7e-34 149.4 260 45.4
CARHR166090 Cardamine hirsuta HOM05D007292 ORTHO05D009084 2.4e-33 146.7 250 42.8
Aa31LG10G10950 Aethionema arabicum HOM05D007292 ORTHO05D009084 4.1e-33 146.0 150 58.0
Sp5g06520 Schrenkiella parvula HOM05D007292 ORTHO05D009084 9.1e-33 144.8 162 52.5
BraA04t16126Z Brassica rapa HOM05D007292 ORTHO05D009084 1.6e-32 144.1 165 51.5
A09p48960 Brassica napus HOM05D007292 ORTHO05D009084 7.7e-32 141.7 118 65.3
C04p36460 Brassica napus HOM05D007292 ORTHO05D009084 7.7e-32 141.7 118 65.3
C08p31330 Brassica napus HOM05D007292 ORTHO05D009084 7.7e-32 141.7 118 65.3
BolC4t25149H Brassica oleracea HOM05D007292 ORTHO05D009084 7.7e-32 141.7 118 65.3
BolC8t50754H Brassica oleracea HOM05D007292 ORTHO05D009084 7.7e-32 141.7 118 65.3
BraA09t40351Z Brassica rapa HOM05D007292 ORTHO05D009084 7.7e-32 141.7 118 65.3
BcaB01g00041 Brassica carinata HOM05D007292 ORTHO05D009084 1.7e-31 140.6 156 55.1
BcaC02g09799 Brassica carinata HOM05D007292 ORTHO05D009084 1.7e-31 140.6 118 65.3
Carub.0005s2275 Capsella rubella HOM05D007292 ORTHO05D009084 1.7e-31 140.6 161 50.9
AL5G37290 Arabidopsis lyrata HOM05D007292 ORTHO05D009084 2.9e-31 139.8 162 50.6
Sc10g0002470 Simmondsia chinensis HOM05D007292 ORTHO05D009084 5.0e-31 139.0 180 50.6
SalBow5G0252 Salvia bowleyana HOM05D007292 ORTHO05D009084 6.5e-31 138.7 258 43.4
AT3G56010 Arabidopsis thaliana HOM05D007292 ORTHO05D009084 1.1e-30 137.9 169 50.3
A04p04080 Brassica napus HOM05D007292 ORTHO05D009084 1.5e-30 137.5 118 64.4
Thhalv10006239m.g Eutrema salsugineum HOM05D007292 ORTHO05D009084 4.2e-30 136.0 252 40.1
ECA238G0254 Erigeron canadensis HOM05D007292 ORTHO05D009084 2.8e-29 133.3 208 46.2
THA.LOC104824327 Tarenaya hassleriana HOM05D007292 ORTHO05D009084 2.8e-29 133.3 259 40.5
Nn2g13181 Nelumbo nucifera HOM05D007292 ORTHO05D009084 4.7e-29 132.5 227 44.9
Hma1.2p1_2705F.1_g327170 Hydrangea macrophylla HOM05D001399 ORTHO05D001670 6.1e-29 132.1 188 52.1
HanXRQChr14g0459531 Helianthus annuus HOM05D007292 ORTHO05D009084 2.3e-28 130.2 122 60.7
THA.LOC104811239 Tarenaya hassleriana HOM05D007292 ORTHO05D009084 5.2e-28 129.0 146 52.1
DCAR_011829 Daucus carota HOM05D007292 ORTHO05D009084 5.7e-27 125.6 248 44.0
Migut.F01485 Erythranthe guttata HOM05D007292 ORTHO05D009084 1.3e-26 124.4 261 38.7
Sabra10G0144000 Salix brachista HOM05D007292 ORTHO05D009084 3.8e-23 112.8 178 47.2
Os03g0293100 Oryza sativa ssp. japonica HOM05D007292 ORTHO05D009084 6.6e-23 112.1 133 50.4
Zm00001eb013500 Zea mays HOM05D007292 ORTHO05D009084 8.6e-23 111.7 201 41.3
COL.COLO4_25767 Corchorus olitorius HOM05D004762 ORTHO05D005972 1.9e-22 110.5 163 48.5
BcaB02g08388 Brassica carinata HOM05D007292 ORTHO05D009084 1.6e-21 107.5 81 66.7
SGA_v2.0_scaffold378G50330 Striga asiatica HOM05D007292 ORTHO05D009084 1.6e-13 80.9 189 38.6
Lj8C64T12 Lonicera japonica HOM05D007292 ORTHO05D009084 5.2e-12 75.9 178 41.0
SEGI_20884 Sequoiadendron giganteum HOM05D007292 ORTHO05D009084 6.8e-12 75.5 224 30.8
CDE04G1468 Ceratophyllum demersum HOM05D000652 ORTHO05D009084 4.9e-10 69.3 190 34.2
AagrBONN_evm.TU.Sc2ySwM_344.666 Anthoceros agrestis HOM05D007292 ORTHO05D009084 5.6e-06 55.8 116 34.5


User provided reference genes

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